{"id":"https://openalex.org/W2154675099","doi":"https://doi.org/10.1093/bib/bbs001","title":"Identification of aberrant pathways and network activities from high-throughput data","display_name":"Identification of aberrant pathways and network activities from high-throughput data","publication_year":2012,"publication_date":"2012-01-27","ids":{"openalex":"https://openalex.org/W2154675099","doi":"https://doi.org/10.1093/bib/bbs001","mag":"2154675099","pmid":"https://pubmed.ncbi.nlm.nih.gov/22287794"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs001","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/406/442326/bbs001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/4/406/442326/bbs001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102137017","display_name":"Jinlian Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Wang","raw_affiliation_strings":["Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC 20057, USA"],"affiliations":[{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC 20057, USA","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000223629","display_name":"Yuji Zhang","orcid":"https://orcid.org/0000-0002-5429-6762"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Zhang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079376711","display_name":"C\u0103t\u0103lin Marian","orcid":"https://orcid.org/0000-0002-7749-1384"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Marian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5025125310","display_name":"Habtom W. Ressom","orcid":"https://orcid.org/0000-0001-9296-2132"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. W. Ressom","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102137017"],"corresponding_institution_ids":["https://openalex.org/I184565670","https://openalex.org/I2799903593"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.5548,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.90077472,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"4","first_page":"406","last_page":"419"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.8453709483146667},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7075029611587524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6455634236335754},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.5773591995239258},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5598552823066711},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45584434270858765},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.42257025837898254},{"id":"https://openalex.org/keywords/signalling-pathways","display_name":"Signalling pathways","score":0.419241338968277},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.35043835639953613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34876492619514465},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3018294870853424},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29750382900238037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16956332325935364},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16433602571487427},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0686996579170227},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.06498381495475769}],"concepts":[{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.8453709483146667},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7075029611587524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6455634236335754},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.5773591995239258},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5598552823066711},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45584434270858765},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.42257025837898254},{"id":"https://openalex.org/C3018449070","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signalling pathways","level":3,"score":0.419241338968277},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.35043835639953613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34876492619514465},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3018294870853424},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29750382900238037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16956332325935364},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16433602571487427},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0686996579170227},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.06498381495475769},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbs001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs001","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/406/442326/bbs001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22287794","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22287794","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2691464","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3404398","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3404398","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3404398","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs001","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/406/442326/bbs001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154675099.pdf","grobid_xml":"https://content.openalex.org/works/W2154675099.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W112811424","https://openalex.org/W198475279","https://openalex.org/W1532331378","https://openalex.org/W1963522244","https://openalex.org/W1963600204","https://openalex.org/W1963853602","https://openalex.org/W1965856472","https://openalex.org/W1967568262","https://openalex.org/W1974886995","https://openalex.org/W1975953992","https://openalex.org/W1991082348","https://openalex.org/W2005596439","https://openalex.org/W2007222211","https://openalex.org/W2009931781","https://openalex.org/W2012852001","https://openalex.org/W2017218687","https://openalex.org/W2028133290","https://openalex.org/W2036230782","https://openalex.org/W2036368290","https://openalex.org/W2037858759","https://openalex.org/W2038601075","https://openalex.org/W2039033307","https://openalex.org/W2040607104","https://openalex.org/W2041046391","https://openalex.org/W2046871813","https://openalex.org/W2047031939","https://openalex.org/W2050149304","https://openalex.org/W2052241039","https://openalex.org/W2054035764","https://openalex.org/W2054357150","https://openalex.org/W2057012490","https://openalex.org/W2058539819","https://openalex.org/W2060842569","https://openalex.org/W2062983115","https://openalex.org/W2063550293","https://openalex.org/W2068138485","https://openalex.org/W2069645361","https://openalex.org/W2070072746","https://openalex.org/W2091789479","https://openalex.org/W2093241068","https://openalex.org/W2094397891","https://openalex.org/W2095802318","https://openalex.org/W2096766502","https://openalex.org/W2097698606","https://openalex.org/W2099589805","https://openalex.org/W2100714130","https://openalex.org/W2102039892","https://openalex.org/W2103950919","https://openalex.org/W2106353254","https://openalex.org/W2108468456","https://openalex.org/W2110280725","https://openalex.org/W2117785738","https://openalex.org/W2120010359","https://openalex.org/W2120261416","https://openalex.org/W2120817191","https://openalex.org/W2120988323","https://openalex.org/W2123527017","https://openalex.org/W2123621576","https://openalex.org/W2123879591","https://openalex.org/W2124486107","https://openalex.org/W2127640118","https://openalex.org/W2133111499","https://openalex.org/W2134672568","https://openalex.org/W2136076059","https://openalex.org/W2136303131","https://openalex.org/W2140409722","https://openalex.org/W2141152663","https://openalex.org/W2142237411","https://openalex.org/W2142302575","https://openalex.org/W2142382737","https://openalex.org/W2145029433","https://openalex.org/W2145899141","https://openalex.org/W2146653758","https://openalex.org/W2146967305","https://openalex.org/W2147464891","https://openalex.org/W2147585745","https://openalex.org/W2150491768","https://openalex.org/W2151846871","https://openalex.org/W2153568634","https://openalex.org/W2154947819","https://openalex.org/W2155142785","https://openalex.org/W2155680682","https://openalex.org/W2157628440","https://openalex.org/W2159585030","https://openalex.org/W2160453515","https://openalex.org/W2163792273","https://openalex.org/W2163871517","https://openalex.org/W2166196020","https://openalex.org/W2166311434","https://openalex.org/W2168264491","https://openalex.org/W2168715739","https://openalex.org/W2169604162","https://openalex.org/W2171560951","https://openalex.org/W2246049295","https://openalex.org/W2323947521","https://openalex.org/W2409901292","https://openalex.org/W2495588903","https://openalex.org/W4293088719"],"related_works":["https://openalex.org/W2980263986","https://openalex.org/W2163262592","https://openalex.org/W3212874355","https://openalex.org/W2810151076","https://openalex.org/W4385510321","https://openalex.org/W1979101600","https://openalex.org/W2379592645","https://openalex.org/W2076982251","https://openalex.org/W2010017764","https://openalex.org/W2078214722"],"abstract_inverted_index":{"Many":[0],"complex":[1],"diseases":[2,34,90],"such":[3,33],"as":[4],"cancer":[5],"are":[6],"associated":[7],"with":[8],"changes":[9],"in":[10,27,40,60,79,99],"biological":[11,42,63],"pathways":[12,43,68,93],"and":[13,30,44,48,69,91,94],"molecular":[14,45],"networks":[15],"rather":[16],"than":[17],"being":[18],"caused":[19],"by":[20],"single":[21],"gene":[22],"alterations.":[23],"A":[24],"major":[25],"challenge":[26],"the":[28,41,53],"diagnosis":[29],"treatment":[31],"of":[32],"is":[35],"to":[36,52,65,86,110],"identify":[37,87],"characteristic":[38],"aberrancies":[39],"network":[46,70,95],"activities":[47],"elucidate":[49],"their":[50],"relationship":[51],"disease.":[54],"This":[55],"review":[56,75],"presents":[57],"recent":[58],"progress":[59],"using":[61],"high-throughput":[62,81],"assays":[64],"decipher":[66],"aberrant":[67,92],"activities.":[71,96],"In":[72],"particular,":[73],"this":[74,100],"provides":[76],"specific":[77],"examples":[78],"which":[80],"data":[82],"have":[83,102,108],"been":[84,103],"applied":[85],"relationships":[88],"between":[89],"The":[97],"achievements":[98],"field":[101],"remarkable,":[104],"but":[105],"many":[106],"challenges":[107],"yet":[109],"be":[111],"addressed.":[112]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
