{"id":"https://openalex.org/W2078598330","doi":"https://doi.org/10.1093/bib/bbr080","title":"Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life","display_name":"Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life","publication_year":2012,"publication_date":"2012-02-04","ids":{"openalex":"https://openalex.org/W2078598330","doi":"https://doi.org/10.1093/bib/bbr080","mag":"2078598330","pmid":"https://pubmed.ncbi.nlm.nih.gov/22308073"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr080","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/420/442083/bbr080.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/13/4/420/442083/bbr080.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061637086","display_name":"James A. Foster","orcid":"https://orcid.org/0000-0002-6770-6521"},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. A. Foster","raw_affiliation_strings":["Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844-3051, USA. foster@uidaho.edu","Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844\u20133051, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844-3051, USA. foster@uidaho.edu","institution_ids":["https://openalex.org/I155093810"]},{"raw_affiliation_string":"Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844\u20133051, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106082585","display_name":"John Bunge","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Bunge","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057060580","display_name":"Jack A. Gilbert","orcid":"https://orcid.org/0000-0001-7920-7001"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. A. Gilbert","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. H. Moore","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061637086"],"corresponding_institution_ids":["https://openalex.org/I155093810"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.7581,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.90924951,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"4","first_page":"420","last_page":"429"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8416286706924438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6027422547340393},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5313388109207153},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.4535232484340668},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3989359438419342},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3870089054107666},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36639025807380676},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26853400468826294},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2587144672870636},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11262300610542297}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8416286706924438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6027422547340393},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5313388109207153},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.4535232484340668},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3989359438419342},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3870089054107666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36639025807380676},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26853400468826294},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2587144672870636},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11262300610542297}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbr080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr080","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/420/442083/bbr080.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22308073","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22308073","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3404397","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3404397","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbr080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr080","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/420/442083/bbr080.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.47999998927116394,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2078598330.pdf","grobid_xml":"https://content.openalex.org/works/W2078598330.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1490053404","https://openalex.org/W1797440778","https://openalex.org/W1811186957","https://openalex.org/W1963802373","https://openalex.org/W1968105193","https://openalex.org/W1969018883","https://openalex.org/W1970472465","https://openalex.org/W1972495915","https://openalex.org/W1975691160","https://openalex.org/W1977800104","https://openalex.org/W1983169073","https://openalex.org/W1985283768","https://openalex.org/W1986090258","https://openalex.org/W1988925586","https://openalex.org/W1989348205","https://openalex.org/W1991486768","https://openalex.org/W1992951570","https://openalex.org/W1993683566","https://openalex.org/W1997752311","https://openalex.org/W2006465310","https://openalex.org/W2013371150","https://openalex.org/W2026513874","https://openalex.org/W2028853048","https://openalex.org/W2047460646","https://openalex.org/W2052201484","https://openalex.org/W2053703914","https://openalex.org/W2055615060","https://openalex.org/W2059237622","https://openalex.org/W2064236037","https://openalex.org/W2067537975","https://openalex.org/W2072970694","https://openalex.org/W2073657083","https://openalex.org/W2073909558","https://openalex.org/W2074003662","https://openalex.org/W2091693057","https://openalex.org/W2091922579","https://openalex.org/W2093062709","https://openalex.org/W2097054300","https://openalex.org/W2098386120","https://openalex.org/W2108718991","https://openalex.org/W2111476644","https://openalex.org/W2111775329","https://openalex.org/W2113287691","https://openalex.org/W2117500540","https://openalex.org/W2118001436","https://openalex.org/W2121918723","https://openalex.org/W2122010307","https://openalex.org/W2129687578","https://openalex.org/W2130077037","https://openalex.org/W2130208436","https://openalex.org/W2132692509","https://openalex.org/W2135947999","https://openalex.org/W2136879569","https://openalex.org/W2146521478","https://openalex.org/W2150914285","https://openalex.org/W2150926065","https://openalex.org/W2151235217","https://openalex.org/W2151671981","https://openalex.org/W2152555393","https://openalex.org/W2153124929","https://openalex.org/W2155652097","https://openalex.org/W2158795865","https://openalex.org/W2159406441","https://openalex.org/W2160166285","https://openalex.org/W2163566694","https://openalex.org/W2168178166","https://openalex.org/W2169583837","https://openalex.org/W2259894175","https://openalex.org/W3100457808","https://openalex.org/W3126096926","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2595711621","https://openalex.org/W1968369492","https://openalex.org/W2210738511","https://openalex.org/W2043102924","https://openalex.org/W2474302342","https://openalex.org/W2965705087","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W3139084279","https://openalex.org/W1222064643"],"abstract_inverted_index":{"This":[0],"article":[1],"reviews":[2],"recent":[3,26],"advances":[4],"in":[5,28,60],"'microbiome":[6],"studies':":[7],"molecular,":[8],"statistical":[9],"and":[10,15,23,46,65],"graphical":[11],"techniques":[12],"to":[13,41],"explore":[14],"quantify":[16],"how":[17],"microbial":[18],"organisms":[19],"affect":[20],"our":[21],"environments":[22],"ourselves":[24],"given":[25],"increases":[27],"sequencing":[29],"technology.":[30],"Microbiome":[31],"studies":[32],"are":[33],"moving":[34],"beyond":[35],"mere":[36],"inventories":[37],"of":[38,43,48,58,63],"specific":[39],"ecosystems":[40],"quantifications":[42],"community":[44],"diversity":[45],"descriptions":[47],"their":[49],"ecological":[50],"function.":[51],"We":[52,75],"review":[53],"the":[54,68],"last":[55],"24":[56],"months":[57],"progress":[59],"this":[61,81],"sort":[62],"research,":[64],"anticipate":[66],"where":[67],"next":[69],"2":[70],"years":[71],"will":[72,79],"take":[73],"us.":[74],"hope":[76],"that":[77],"bioinformaticians":[78],"find":[80],"a":[82],"helpful":[83],"springboard":[84],"for":[85],"new":[86],"collaborations":[87],"with":[88],"microbiologists.":[89]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
