{"id":"https://openalex.org/W2128965269","doi":"https://doi.org/10.1093/bib/bbr069","title":"Hive plots--rational approach to visualizing networks","display_name":"Hive plots--rational approach to visualizing networks","publication_year":2011,"publication_date":"2011-12-09","ids":{"openalex":"https://openalex.org/W2128965269","doi":"https://doi.org/10.1093/bib/bbr069","mag":"2128965269","pmid":"https://pubmed.ncbi.nlm.nih.gov/22155641"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr069","pdf_url":"https://academic.oup.com/bib/article-pdf/13/5/627/1147399/bbr069.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/5/627/1147399/bbr069.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105781772","display_name":"Martin Krzywinski","orcid":"https://orcid.org/0009-0005-5785-3631"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"M. Krzywinski","raw_affiliation_strings":["BC Cancer Research Center, Vancouver, Canada. martink@bcgsc.ca","BC Cancer Research Center, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Research Center, Vancouver, Canada. martink@bcgsc.ca","institution_ids":[]},{"raw_affiliation_string":"BC Cancer Research Center, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017539699","display_name":"\u0130nan\u00e7 Birol","orcid":"https://orcid.org/0000-0003-0950-7839"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"I. Birol","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100728059","display_name":"Steven J.M. Jones","orcid":"https://orcid.org/0000-0003-3394-2208"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S. J. Jones","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5070061359","display_name":"Marco A. Marra","orcid":"https://orcid.org/0000-0001-7146-7175"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. A. Marra","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5105781772"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":12.4831,"has_fulltext":false,"cited_by_count":221,"citation_normalized_percentile":{"value":0.99078933,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"13","issue":"5","first_page":"627","last_page":"644"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.843217134475708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8305329084396362},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6513559222221375},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5796230435371399},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4588698744773865},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3805784285068512},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33332517743110657},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11336171627044678}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.843217134475708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8305329084396362},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6513559222221375},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5796230435371399},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4588698744773865},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3805784285068512},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33332517743110657},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11336171627044678},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbr069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr069","pdf_url":"https://academic.oup.com/bib/article-pdf/13/5/627/1147399/bbr069.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22155641","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22155641","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbr069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr069","pdf_url":"https://academic.oup.com/bib/article-pdf/13/5/627/1147399/bbr069.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Gender equality","id":"https://metadata.un.org/sdg/5","score":0.4300000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314103","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897"},{"id":"https://openalex.org/F4320329172","display_name":"BC Cancer Foundation","ror":"https://ror.org/03gqhbs95"},{"id":"https://openalex.org/F4320335036","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128965269.pdf","grobid_xml":"https://content.openalex.org/works/W2128965269.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W222503269","https://openalex.org/W585702508","https://openalex.org/W1270834676","https://openalex.org/W1506292197","https://openalex.org/W1558125707","https://openalex.org/W1875112053","https://openalex.org/W1931404780","https://openalex.org/W1966822396","https://openalex.org/W1971499375","https://openalex.org/W1976160686","https://openalex.org/W1978486653","https://openalex.org/W1994803330","https://openalex.org/W2017274683","https://openalex.org/W2021729364","https://openalex.org/W2023098599","https://openalex.org/W2025027691","https://openalex.org/W2029130073","https://openalex.org/W2046854548","https://openalex.org/W2054331129","https://openalex.org/W2057498577","https://openalex.org/W2059430992","https://openalex.org/W2059503205","https://openalex.org/W2068109876","https://openalex.org/W2071353749","https://openalex.org/W2083045667","https://openalex.org/W2088062845","https://openalex.org/W2094176393","https://openalex.org/W2098772804","https://openalex.org/W2098900644","https://openalex.org/W2099551325","https://openalex.org/W2099809434","https://openalex.org/W2100585269","https://openalex.org/W2101181377","https://openalex.org/W2105537192","https://openalex.org/W2105546352","https://openalex.org/W2106474670","https://openalex.org/W2111823238","https://openalex.org/W2113613985","https://openalex.org/W2114390083","https://openalex.org/W2114690198","https://openalex.org/W2116759966","https://openalex.org/W2117614080","https://openalex.org/W2118640842","https://openalex.org/W2125910575","https://openalex.org/W2128712108","https://openalex.org/W2136651963","https://openalex.org/W2139483589","https://openalex.org/W2140388483","https://openalex.org/W2140635350","https://openalex.org/W2140679462","https://openalex.org/W2142237411","https://openalex.org/W2143784594","https://openalex.org/W2145889895","https://openalex.org/W2150066952","https://openalex.org/W2151936673","https://openalex.org/W2153039146","https://openalex.org/W2155142785","https://openalex.org/W2156443053","https://openalex.org/W2158804744","https://openalex.org/W2159675211","https://openalex.org/W2166994421","https://openalex.org/W2167155713","https://openalex.org/W2167482691","https://openalex.org/W2167852549","https://openalex.org/W2169803818","https://openalex.org/W2171707538","https://openalex.org/W2949130492","https://openalex.org/W4232827796","https://openalex.org/W4246649397","https://openalex.org/W4256331985"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2981957539","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W4213354039","https://openalex.org/W2266220644","https://openalex.org/W88292646"],"abstract_inverted_index":{"Networks":[0],"are":[1,33,63],"typically":[2],"visualized":[3],"with":[4],"force-based":[5],"or":[6],"spectral":[7],"layouts.":[8,56],"These":[9],"algorithms":[10],"lack":[11],"reproducibility":[12],"and":[13,32,53,67,84],"perceptual":[14],"uniformity":[15],"because":[16],"they":[17],"do":[18],"not":[19],"use":[20],"a":[21,88],"node":[22],"coordinate":[23],"system.":[24],"The":[25,77],"layouts":[26],"can":[27,68],"be":[28,69],"difficult":[29],"to":[30,65,72,87],"interpret":[31],"unsuitable":[34],"for":[35,49,90],"assessing":[36],"differences":[37],"in":[38],"networks.":[39],"To":[40],"address":[41],"these":[42],"issues,":[43],"we":[44],"introduce":[45],"hive":[46],"plots":[47,58],"(http://www.hiveplot.com)":[48],"generating":[50],"informative,":[51],"quantitative":[52],"comparable":[54],"network":[55,60],"Hive":[57],"depict":[59],"structure":[61],"transparently,":[62],"simple":[64],"understand":[66],"easily":[70],"tuned":[71],"identify":[73],"patterns":[74],"of":[75],"interest.":[76],"method":[78],"is":[79,85],"computationally":[80],"straightforward,":[81],"scales":[82],"well":[83],"amenable":[86],"plugin":[89],"existing":[91],"tools.":[92]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-29T08:15:47.926485","created_date":"2025-10-10T00:00:00"}