{"id":"https://openalex.org/W2098182896","doi":"https://doi.org/10.1093/bib/bbr055","title":"Tools and collaborative environments for bioinformatics research","display_name":"Tools and collaborative environments for bioinformatics research","publication_year":2011,"publication_date":"2011-10-07","ids":{"openalex":"https://openalex.org/W2098182896","doi":"https://doi.org/10.1093/bib/bbr055","mag":"2098182896","pmid":"https://pubmed.ncbi.nlm.nih.gov/21984743"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr055","pdf_url":"https://academic.oup.com/bib/article-pdf/12/6/549/593734/bbr055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/12/6/549/593734/bbr055.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009876996","display_name":"Paolo Romano","orcid":"https://orcid.org/0000-0003-4694-3883"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"P. Romano","raw_affiliation_strings":["Bioinformatics, National Cancer Research Institute (IST), Genoa, Italy. paolo.romano@istge.it","Bioinformatics, National Cancer Research Institute (IST), Genoa, Italy"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, National Cancer Research Institute (IST), Genoa, Italy. paolo.romano@istge.it","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics, National Cancer Research Institute (IST), Genoa, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002057785","display_name":"Rosalba Giugno","orcid":"https://orcid.org/0000-0001-9843-7638"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"R. Giugno","raw_affiliation_strings":["University of Catania"],"affiliations":[{"raw_affiliation_string":"University of Catania","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057481978","display_name":"Alfredo Pulvirenti","orcid":"https://orcid.org/0000-0002-9764-0295"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Pulvirenti","raw_affiliation_strings":["University of Catania"],"affiliations":[{"raw_affiliation_string":"University of Catania","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009876996"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.1668,"has_fulltext":false,"cited_by_count":78,"citation_normalized_percentile":{"value":0.95992422,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":"6","first_page":"549","last_page":"561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7260954976081848},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6218764185905457},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6018726229667664},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5859931111335754},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5834351181983948},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.5257433652877808},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5197286605834961},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.35703733563423157},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32089072465896606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7260954976081848},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6218764185905457},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6018726229667664},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5859931111335754},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5834351181983948},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.5257433652877808},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5197286605834961},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.35703733563423157},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32089072465896606},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060756","descriptor_name":"Social Networking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060756","descriptor_name":"Social Networking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060756","descriptor_name":"Social Networking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbr055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr055","pdf_url":"https://academic.oup.com/bib/article-pdf/12/6/549/593734/bbr055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21984743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21984743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.869.8528","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.869.8528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/12/6/549.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2221453","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3220874","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbr055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr055","pdf_url":"https://academic.oup.com/bib/article-pdf/12/6/549/593734/bbr055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098182896.pdf","grobid_xml":"https://content.openalex.org/works/W2098182896.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W31461794","https://openalex.org/W147587763","https://openalex.org/W164109170","https://openalex.org/W613835234","https://openalex.org/W655583567","https://openalex.org/W1516735453","https://openalex.org/W1603550197","https://openalex.org/W1765826514","https://openalex.org/W1971344984","https://openalex.org/W1989626479","https://openalex.org/W1993862291","https://openalex.org/W2010502047","https://openalex.org/W2015899005","https://openalex.org/W2025142263","https://openalex.org/W2032843080","https://openalex.org/W2042037135","https://openalex.org/W2049684331","https://openalex.org/W2050019454","https://openalex.org/W2050028106","https://openalex.org/W2060265377","https://openalex.org/W2067172306","https://openalex.org/W2072947977","https://openalex.org/W2088663656","https://openalex.org/W2097454222","https://openalex.org/W2113895164","https://openalex.org/W2115450832","https://openalex.org/W2123142779","https://openalex.org/W2124324682","https://openalex.org/W2132586689","https://openalex.org/W2138621811","https://openalex.org/W2140157849","https://openalex.org/W2143235091","https://openalex.org/W2145065529","https://openalex.org/W2145711555","https://openalex.org/W2146623968","https://openalex.org/W2150240046","https://openalex.org/W2156090412","https://openalex.org/W2159675211","https://openalex.org/W2160697532","https://openalex.org/W2162541975","https://openalex.org/W2162544437","https://openalex.org/W2183088835","https://openalex.org/W2265991260","https://openalex.org/W2395943263","https://openalex.org/W2479005208","https://openalex.org/W2533392273","https://openalex.org/W2751349120","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2003100177","https://openalex.org/W2391444248","https://openalex.org/W2390716080"],"abstract_inverted_index":{"Advanced":[0],"research":[1,27,60],"requires":[2],"intensive":[3],"interaction":[4],"among":[5],"a":[6,18,84],"multitude":[7],"of":[8,25,51,75,80,101,105,127,138,158,169,182],"actors,":[9],"often":[10],"possessing":[11],"different":[12],"expertise":[13],"and":[14,33,73,103,119,124,144,155],"usually":[15],"working":[16],"at":[17],"distance":[19],"from":[20,65],"each":[21],"other.":[22],"The":[23],"field":[24],"collaborative":[26,66,113],"aims":[28],"to":[29,35,87,166,172],"establish":[30],"suitable":[31],"models":[32],"technologies":[34],"properly":[36],"support":[37],"these":[38,183],"interactions.":[39],"In":[40,162],"this":[41,54],"article,":[42],"we":[43,151,164],"first":[44],"present":[45,152],"the":[46,71,76,128,136,153,170,176,180],"reasons":[47],"for":[48,112,121,142,179],"an":[49],"interest":[50],"Bioinformatics":[52],"in":[53,148,175],"context":[55],"by":[56,92],"also":[57,93,134],"suggesting":[58],"some":[59,74,95,110,126,146,156,168],"domains":[61],"that":[62],"could":[63],"benefit":[64],"research.":[67],"We":[68,107,133],"then":[69,108],"review":[70,125,135],"principles":[72,137,154],"most":[77,129],"relevant":[78],"applications":[79],"social":[81],"networking,":[82],"with":[83],"special":[85],"attention":[86],"networks":[88],"supporting":[89],"scientific":[90],"collaboration,":[91],"highlighting":[94],"critical":[96],"issues,":[97],"such":[98],"as":[99],"identification":[100],"users":[102],"standardization":[104],"formats.":[106],"introduce":[109],"systems":[111,118],"document":[114],"creation,":[115],"including":[116],"wiki":[117],"tools":[120],"ontology":[122],"development,":[123],"interesting":[130],"biological":[131],"wikis.":[132],"Collaborative":[139],"Development":[140],"Environments":[141],"software":[143],"show":[145],"examples":[147,157],"Bioinformatics.":[149],"Finally,":[150],"Learning":[159],"Management":[160],"Systems.":[161],"conclusion,":[163],"try":[165],"devise":[167],"goals":[171],"be":[173],"achieved":[174],"short":[177],"term":[178],"exploitation":[181],"technologies.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
