{"id":"https://openalex.org/W2111327237","doi":"https://doi.org/10.1093/bib/bbr054","title":"Functional mapping of ontogeny in flowering plants","display_name":"Functional mapping of ontogeny in flowering plants","publication_year":2011,"publication_date":"2011-12-02","ids":{"openalex":"https://openalex.org/W2111327237","doi":"https://doi.org/10.1093/bib/bbr054","mag":"2111327237","pmid":"https://pubmed.ncbi.nlm.nih.gov/22138324"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr054","pdf_url":"https://academic.oup.com/bib/article-pdf/13/3/317/679692/bbr054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/3/317/679692/bbr054.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028817139","display_name":"Xueying Zhao","orcid":"https://orcid.org/0000-0003-0857-2823"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"X. Zhao","raw_affiliation_strings":["National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Beijing Forestry University, Beijing 100083, China"],"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Beijing Forestry University, Beijing 100083, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070596137","display_name":"Chunfa Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"C. Tong","raw_affiliation_strings":["Nanjing Forestry University"],"affiliations":[{"raw_affiliation_string":"Nanjing Forestry University","institution_ids":["https://openalex.org/I167027274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103137279","display_name":"Xiaoyun Pang","orcid":"https://orcid.org/0000-0002-8476-3771"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"X. Pang","raw_affiliation_strings":["Beijing Forestry University"],"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115602037","display_name":"Zheng Wang","orcid":"https://orcid.org/0000-0002-1243-0177"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z. Wang","raw_affiliation_strings":["Pennsylvania State Univ#TAB#"],"affiliations":[{"raw_affiliation_string":"Pennsylvania State Univ#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111901101","display_name":"Y. Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. Guo","raw_affiliation_strings":["Beijing Forestry University"],"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041329635","display_name":"Fang Du","orcid":"https://orcid.org/0000-0002-7377-5259"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"F. Du","raw_affiliation_strings":["Beijing Forestry University"],"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031422180","display_name":"Rongling Wu","orcid":"https://orcid.org/0000-0001-8350-7779"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. Wu","raw_affiliation_strings":["Department of Public Health Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Public Health Sciences","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5028817139"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8032,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.79605356,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"3","first_page":"317","last_page":"328"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11927","display_name":"Plant Reproductive Biology","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontogeny","display_name":"Ontogeny","score":0.8913182020187378},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8098634481430054},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.6142086982727051},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.5145756602287292},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4657624065876007},{"id":"https://openalex.org/keywords/embryo","display_name":"Embryo","score":0.43128499388694763},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3308458626270294},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33004996180534363},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.22541046142578125},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2107512354850769},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1673983335494995}],"concepts":[{"id":"https://openalex.org/C37291498","wikidata":"https://www.wikidata.org/wiki/Q193603","display_name":"Ontogeny","level":2,"score":0.8913182020187378},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8098634481430054},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.6142086982727051},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.5145756602287292},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4657624065876007},{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.43128499388694763},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3308458626270294},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33004996180534363},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.22541046142578125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2107512354850769},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1673983335494995},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063245","descriptor_name":"Plant Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063245","descriptor_name":"Plant Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063245","descriptor_name":"Plant Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbr054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr054","pdf_url":"https://academic.oup.com/bib/article-pdf/13/3/317/679692/bbr054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22138324","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22138324","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbr054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr054","pdf_url":"https://academic.oup.com/bib/article-pdf/13/3/317/679692/bbr054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.44999998807907104,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111327237.pdf","grobid_xml":"https://content.openalex.org/works/W2111327237.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1486359600","https://openalex.org/W1502621380","https://openalex.org/W1864236842","https://openalex.org/W1944381374","https://openalex.org/W1964877861","https://openalex.org/W1967731019","https://openalex.org/W1968676313","https://openalex.org/W1981190999","https://openalex.org/W1991150279","https://openalex.org/W1996952375","https://openalex.org/W2030989926","https://openalex.org/W2031424280","https://openalex.org/W2044890798","https://openalex.org/W2050180108","https://openalex.org/W2059448799","https://openalex.org/W2065203603","https://openalex.org/W2078140686","https://openalex.org/W2081915704","https://openalex.org/W2086515060","https://openalex.org/W2092293039","https://openalex.org/W2094122630","https://openalex.org/W2096315303","https://openalex.org/W2097993789","https://openalex.org/W2098195313","https://openalex.org/W2103463434","https://openalex.org/W2103685553","https://openalex.org/W2107366172","https://openalex.org/W2115048149","https://openalex.org/W2120329252","https://openalex.org/W2121344045","https://openalex.org/W2125893143","https://openalex.org/W2130499440","https://openalex.org/W2132136192","https://openalex.org/W2134053059","https://openalex.org/W2134278939","https://openalex.org/W2148720618","https://openalex.org/W2151615469","https://openalex.org/W2155170584","https://openalex.org/W2156262565","https://openalex.org/W2157074170","https://openalex.org/W2158367785","https://openalex.org/W2163285329","https://openalex.org/W2167681032","https://openalex.org/W2175190194","https://openalex.org/W2278685458","https://openalex.org/W2434349777","https://openalex.org/W2963205483"],"related_works":["https://openalex.org/W1988591246","https://openalex.org/W1990222158","https://openalex.org/W4232104542","https://openalex.org/W2097598620","https://openalex.org/W2441533625","https://openalex.org/W4242773062","https://openalex.org/W2012110913","https://openalex.org/W2122593619","https://openalex.org/W81273131","https://openalex.org/W2914399932"],"abstract_inverted_index":{"All":[0],"organisms":[1,141],"face":[2],"the":[3,38,50,63,77,129],"problem":[4],"of":[5,11,41,66,76,81,132],"how":[6],"to":[7,27,34,46,52,89,103,109,127],"perform":[8],"a":[9,22,59,73,87,90,124],"sequence":[10],"developmental":[12,32],"changes":[13],"and":[14,48,71,112,118,138],"transitions":[15],"during":[16],"ontogeny.":[17],"We":[18,94],"revise":[19],"functional":[20],"mapping,":[21],"statistical":[23],"model":[24,57,106,122],"originally":[25],"derived":[26],"map":[28,110],"genes":[29,111],"that":[30,61,83],"determine":[31],"dynamics,":[33],"take":[35],"into":[36],"account":[37],"entire":[39],"process":[40],"ontogenetic":[42,133],"growth":[43,82,134],"from":[44,49,86],"embryo":[45,117],"adult":[47],"vegetative":[51],"reproductive":[53],"phase.":[54],"The":[55,121],"revised":[56],"provides":[58,123],"framework":[60],"reconciles":[62],"genetic":[64,78,130],"architecture":[65],"development":[67],"at":[68],"different":[69],"stages":[70],"elucidates":[72],"comprehensive":[74],"picture":[75],"control":[79,131],"mechanisms":[80],"change":[84],"gradually":[85],"simple":[88],"more":[91],"complex":[92],"level.":[93],"use":[95],"an":[96,101],"annual":[97],"flowering":[98,136],"plant,":[99],"as":[100],"example,":[102],"demonstrate":[104],"our":[105],"by":[107],"which":[108],"their":[113,147],"interactions":[114],"involved":[115],"in":[116,135],"postembryonic":[119],"growth.":[120],"useful":[125],"tool":[126],"study":[128],"plants":[137],"any":[139],"other":[140],"through":[142],"proper":[143],"modifications":[144],"based":[145],"on":[146],"biological":[148],"characteristics.":[149]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}