{"id":"https://openalex.org/W2099321785","doi":"https://doi.org/10.1093/bib/bbr030","title":"Computational methods for Gene Orthology inference","display_name":"Computational methods for Gene Orthology inference","publication_year":2011,"publication_date":"2011-06-19","ids":{"openalex":"https://openalex.org/W2099321785","doi":"https://doi.org/10.1093/bib/bbr030","mag":"2099321785","pmid":"https://pubmed.ncbi.nlm.nih.gov/21690100"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr030","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/379/751564/bbr030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/12/5/379/751564/bbr030.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042113315","display_name":"David M. Kristensen","orcid":"https://orcid.org/0000-0003-0657-1632"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. M. Kristensen","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012792532","display_name":"Yuri I. Wolf","orcid":"https://orcid.org/0000-0002-0247-8708"},"institutions":[{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210128618","display_name":"University of Kansas Medical Center","ror":"https://ror.org/036c9yv20","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210128618"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Y. I. Wolf","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the","University of Kansas Medical center (Kansas City, Kansas, USA","National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the","institution_ids":["https://openalex.org/I114131015"]},{"raw_affiliation_string":"University of Kansas Medical center (Kansas City, Kansas, USA","institution_ids":["https://openalex.org/I4210128618"]},{"raw_affiliation_string":"National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026824276","display_name":"Arcady Mushegian","orcid":"https://orcid.org/0000-0002-6809-9225"},"institutions":[{"id":"https://openalex.org/I4210128618","display_name":"University of Kansas Medical Center","ror":"https://ror.org/036c9yv20","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210128618"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. R. Mushegian","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA","University of Kansas Medical center (Kansas City, Kansas, USA","Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"University of Kansas Medical center (Kansas City, Kansas, USA","institution_ids":["https://openalex.org/I4210128618"]},{"raw_affiliation_string":"Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the","institution_ids":["https://openalex.org/I114131015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035240489","display_name":"Eugene V. Koonin","orcid":"https://orcid.org/0000-0003-3943-8299"},"institutions":[{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210128618","display_name":"University of Kansas Medical Center","ror":"https://ror.org/036c9yv20","country_code":"US","type":"funder","lineage":["https://openalex.org/I4210128618"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"E. V. Koonin","raw_affiliation_strings":["National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA","Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the","University of Kansas Medical center (Kansas City, Kansas, USA","National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NLM, NIH, Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Bioinformatics Research at the Stowers Institute for Medical Research (Kansas City, Missouri, USA) and Professor of Microbiology at the","institution_ids":["https://openalex.org/I114131015"]},{"raw_affiliation_string":"University of Kansas Medical center (Kansas City, Kansas, USA","institution_ids":["https://openalex.org/I4210128618"]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035240489"],"corresponding_institution_ids":["https://openalex.org/I114131015","https://openalex.org/I1299303238","https://openalex.org/I4210109390","https://openalex.org/I4210128618"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":10.2461,"has_fulltext":true,"cited_by_count":261,"citation_normalized_percentile":{"value":0.98929465,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"12","issue":"5","first_page":"379","last_page":"391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7899683713912964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6252792477607727},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5891331434249878},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5241080522537231},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3725932836532593},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32793939113616943},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30916160345077515}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7899683713912964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6252792477607727},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5891331434249878},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5241080522537231},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3725932836532593},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32793939113616943},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30916160345077515}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbr030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr030","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/379/751564/bbr030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21690100","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21690100","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2431636","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3178053","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbr030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr030","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/379/751564/bbr030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3171566186","display_name":null,"funder_award_id":"Z01 LM000073","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310084","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099321785.pdf","grobid_xml":"https://content.openalex.org/works/W2099321785.grobid-xml"},"referenced_works_count":140,"referenced_works":["https://openalex.org/W319819633","https://openalex.org/W1542595575","https://openalex.org/W1574491395","https://openalex.org/W1634004830","https://openalex.org/W1865899696","https://openalex.org/W1958476169","https://openalex.org/W1964612763","https://openalex.org/W1970764623","https://openalex.org/W1972017488","https://openalex.org/W1977027195","https://openalex.org/W1979558568","https://openalex.org/W1984373656","https://openalex.org/W1989511261","https://openalex.org/W1990453950","https://openalex.org/W1992159722","https://openalex.org/W1995117714","https://openalex.org/W1998102356","https://openalex.org/W2000024082","https://openalex.org/W2000155425","https://openalex.org/W2006746194","https://openalex.org/W2007447692","https://openalex.org/W2007668764","https://openalex.org/W2008856488","https://openalex.org/W2008959928","https://openalex.org/W2009154103","https://openalex.org/W2009234149","https://openalex.org/W2011537739","https://openalex.org/W2012035190","https://openalex.org/W2014682834","https://openalex.org/W2019216543","https://openalex.org/W2022927779","https://openalex.org/W2024812560","https://openalex.org/W2027031393","https://openalex.org/W2029833898","https://openalex.org/W2031611770","https://openalex.org/W2032603188","https://openalex.org/W2037883697","https://openalex.org/W2038968181","https://openalex.org/W2041837226","https://openalex.org/W2044892321","https://openalex.org/W2047405437","https://openalex.org/W2048448217","https://openalex.org/W2052315005","https://openalex.org/W2053096433","https://openalex.org/W2053501576","https://openalex.org/W2055043387","https://openalex.org/W2058881329","https://openalex.org/W2060086778","https://openalex.org/W2064003510","https://openalex.org/W2081933515","https://openalex.org/W2082202339","https://openalex.org/W2083788527","https://openalex.org/W2087064593","https://openalex.org/W2092672051","https://openalex.org/W2096004078","https://openalex.org/W2096306047","https://openalex.org/W2096525273","https://openalex.org/W2097050656","https://openalex.org/W2098686923","https://openalex.org/W2100668314","https://openalex.org/W2103017472","https://openalex.org/W2103546861","https://openalex.org/W2103796158","https://openalex.org/W2104764316","https://openalex.org/W2105329815","https://openalex.org/W2106044656","https://openalex.org/W2106265368","https://openalex.org/W2107537542","https://openalex.org/W2107868636","https://openalex.org/W2107954630","https://openalex.org/W2109368213","https://openalex.org/W2110105435","https://openalex.org/W2110218196","https://openalex.org/W2110591305","https://openalex.org/W2111229238","https://openalex.org/W2111973517","https://openalex.org/W2112250822","https://openalex.org/W2112792893","https://openalex.org/W2112884978","https://openalex.org/W2113234327","https://openalex.org/W2115467411","https://openalex.org/W2116494281","https://openalex.org/W2119161962","https://openalex.org/W2119501380","https://openalex.org/W2119801041","https://openalex.org/W2120494346","https://openalex.org/W2120864016","https://openalex.org/W2121166240","https://openalex.org/W2121564430","https://openalex.org/W2121856130","https://openalex.org/W2124105487","https://openalex.org/W2124786890","https://openalex.org/W2124815061","https://openalex.org/W2124908487","https://openalex.org/W2125029076","https://openalex.org/W2125194704","https://openalex.org/W2127596034","https://openalex.org/W2127660113","https://openalex.org/W2127957894","https://openalex.org/W2130353827","https://openalex.org/W2130581715","https://openalex.org/W2132023322","https://openalex.org/W2134025859","https://openalex.org/W2134824589","https://openalex.org/W2135123683","https://openalex.org/W2136252135","https://openalex.org/W2137464714","https://openalex.org/W2142678478","https://openalex.org/W2143335572","https://openalex.org/W2143592941","https://openalex.org/W2144377764","https://openalex.org/W2144833893","https://openalex.org/W2145100181","https://openalex.org/W2146677747","https://openalex.org/W2146709375","https://openalex.org/W2151859071","https://openalex.org/W2152570956","https://openalex.org/W2154044807","https://openalex.org/W2154364831","https://openalex.org/W2155606054","https://openalex.org/W2157321139","https://openalex.org/W2159266221","https://openalex.org/W2159500193","https://openalex.org/W2160282582","https://openalex.org/W2161421500","https://openalex.org/W2161762698","https://openalex.org/W2162327194","https://openalex.org/W2164898486","https://openalex.org/W2167188257","https://openalex.org/W2167455933","https://openalex.org/W2167764618","https://openalex.org/W2168048337","https://openalex.org/W2168148721","https://openalex.org/W2169929748","https://openalex.org/W3160760986","https://openalex.org/W4205911826","https://openalex.org/W4236236547","https://openalex.org/W4242044180","https://openalex.org/W4244606935","https://openalex.org/W4292239814"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W4321636575","https://openalex.org/W2357796999","https://openalex.org/W2045526782","https://openalex.org/W2741131631","https://openalex.org/W1986418932","https://openalex.org/W2156919374","https://openalex.org/W35446969","https://openalex.org/W1984019423","https://openalex.org/W2034625591"],"abstract_inverted_index":{"Accurate":[0],"inference":[1],"of":[2,20,24,44,57,80,99,106,121,174,179,201,203,206,219,232],"orthologous":[3,25],"genes":[4,122,175],"is":[5,14],"a":[6,63,151,177],"pre-requisite":[7],"for":[8,17,103,118],"most":[9,48,96],"comparative":[10],"genomics":[11],"studies,":[12],"and":[13,123,125,142,185,238],"also":[15,227],"important":[16],"functional":[18],"annotation":[19],"new":[21],"genomes.":[22,204],"Identification":[23],"gene":[26,60,92],"sets":[27,218],"typically":[28,52],"involves":[29],"phylogenetic":[30,111],"tree":[31,61,158],"analysis,":[32,40],"heuristic":[33,162],"algorithms":[34,198],"based":[35],"on":[36,54],"sequence":[37,236],"conservation,":[38],"synteny":[39],"or":[41,172],"some":[42],"combination":[43],"these":[45,207],"approaches.":[46],"The":[47],"direct":[49],"tree-based":[50,190],"methods":[51,163],"rely":[53],"the":[55,67,78,104,168],"comparison":[56],"an":[58],"individual":[59],"with":[62,192],"species":[64],"tree.":[65],"Once":[66],"two":[68,208],"trees":[69,112],"are":[70,74,86,113,183],"accurately":[71],"constructed,":[72],"orthologs":[73,166],"straightforwardly":[75],"identified":[76],"by":[77,88,196],"definition":[79],"orthology":[81,107],"as":[82,167],"those":[83],"homologs":[84],"that":[85],"related":[87],"speciation,":[89],"rather":[90],"than":[91,189],"duplication,":[93],"at":[94,131,222],"their":[95],"recent":[97],"point":[98],"origin.":[100],"Although":[101],"ideal":[102],"purpose":[105],"identification":[108,231],"in":[109,136,139,176,230],"principle,":[110],"computationally":[114],"expensive":[115],"to":[116,148,187],"construct":[117],"large":[119,132],"numbers":[120],"genomes,":[124],"they":[126,215],"often":[127],"contain":[128],"errors,":[129],"especially":[130,221],"evolutionary":[133,224],"distances.":[134,225],"Moreover,":[135],"many":[137],"organisms,":[138],"particular":[140],"prokaryotes":[141],"viruses,":[143],"evolution":[144],"does":[145],"not":[146],"appear":[147],"have":[149],"followed":[150],"simple":[152],"'tree-like'":[153],"mode,":[154],"which":[155],"makes":[156],"conventional":[157],"reconciliation":[159],"inapplicable.":[160],"Other,":[161],"identify":[164],"probable":[165],"closest":[169],"homologous":[170],"pairs":[171],"groups":[173],"set":[178],"organisms.":[180],"These":[181],"approaches":[182,209,240],"faster":[184],"easier":[186],"automate":[188],"methods,":[191],"efficient":[193],"implementations":[194],"provided":[195],"graph-theoretical":[197],"enabling":[199],"comparisons":[200],"thousands":[202],"Comparisons":[205],"show":[210],"that,":[211],"despite":[212],"conceptual":[213],"differences,":[214],"produce":[216],"similar":[217],"orthologs,":[220],"short":[223],"Synteny":[226],"can":[228,241],"aid":[229],"orthologs.":[233],"Often,":[234],"tree-based,":[235],"similarity-":[237],"synteny-based":[239],"be":[242],"combined":[243],"into":[244],"flexible":[245],"hybrid":[246],"methods.":[247]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":30},{"year":2012,"cited_by_count":15}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
