{"id":"https://openalex.org/W2150178057","doi":"https://doi.org/10.1093/bib/bbr014","title":"The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy","display_name":"The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy","publication_year":2011,"publication_date":"2011-03-23","ids":{"openalex":"https://openalex.org/W2150178057","doi":"https://doi.org/10.1093/bib/bbr014","mag":"2150178057","pmid":"https://pubmed.ncbi.nlm.nih.gov/21436145"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr014","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/122/583593/bbr014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/1/122/583593/bbr014.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077978790","display_name":"Ahmed Ragab Nabhan","orcid":null},"institutions":[{"id":"https://openalex.org/I111236770","display_name":"University of Vermont","ror":"https://ror.org/0155zta11","country_code":"US","type":"education","lineage":["https://openalex.org/I111236770"]},{"id":"https://openalex.org/I66513531","display_name":"Fayoum University","ror":"https://ror.org/023gzwx10","country_code":"EG","type":"education","lineage":["https://openalex.org/I66513531"]}],"countries":["EG","US"],"is_corresponding":false,"raw_author_name":"A. R. Nabhan","raw_affiliation_strings":["Center for Clinical and Translational Science, 89 Beaumont Avenue, Given Courtyard N309, Burlington, VT 05405, USA","Department of Computer Science at the University of Vermont, USA,","Fayoum University, Egypt"],"affiliations":[{"raw_affiliation_string":"Center for Clinical and Translational Science, 89 Beaumont Avenue, Given Courtyard N309, Burlington, VT 05405, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science at the University of Vermont, USA,","institution_ids":["https://openalex.org/I111236770"]},{"raw_affiliation_string":"Fayoum University, Egypt","institution_ids":["https://openalex.org/I66513531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086602697","display_name":"Indra Neil Sarkar","orcid":"https://orcid.org/0000-0003-2054-7356"},"institutions":[{"id":"https://openalex.org/I111236770","display_name":"University of Vermont","ror":"https://ror.org/0155zta11","country_code":"US","type":"education","lineage":["https://openalex.org/I111236770"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"I. N. Sarkar","raw_affiliation_strings":["Computer Science at the University of Vermont","Department of Computer Science at the University of Vermont, USA,"],"affiliations":[{"raw_affiliation_string":"Computer Science at the University of Vermont","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science at the University of Vermont, USA,","institution_ids":["https://openalex.org/I111236770"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5086602697"],"corresponding_institution_ids":["https://openalex.org/I111236770"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7355,"has_fulltext":true,"cited_by_count":238,"citation_normalized_percentile":{"value":0.94151497,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"13","issue":"1","first_page":"122","last_page":"134"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.8281564712524414},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7439491748809814},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7051100730895996},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.6008090376853943},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.47634437680244446},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45079073309898376},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4117196202278137},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37389370799064636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3691653907299042},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23226428031921387},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1560560166835785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10185033082962036}],"concepts":[{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.8281564712524414},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7439491748809814},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7051100730895996},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.6008090376853943},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.47634437680244446},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45079073309898376},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4117196202278137},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37389370799064636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3691653907299042},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23226428031921387},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1560560166835785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10185033082962036},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr014","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/122/583593/bbr014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21436145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21436145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2530431","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3251835","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3251835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3251835","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbr014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr014","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/122/583593/bbr014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4349278416","display_name":null,"funder_award_id":"R01LM009725","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150178057.pdf","grobid_xml":"https://content.openalex.org/works/W2150178057.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W1814244002","https://openalex.org/W1963611440","https://openalex.org/W1969378935","https://openalex.org/W1973101413","https://openalex.org/W1975879554","https://openalex.org/W1978854233","https://openalex.org/W1983825410","https://openalex.org/W1987953838","https://openalex.org/W1988608815","https://openalex.org/W1990263013","https://openalex.org/W1991821268","https://openalex.org/W2000795465","https://openalex.org/W2002446259","https://openalex.org/W2009219904","https://openalex.org/W2012598184","https://openalex.org/W2016065960","https://openalex.org/W2020343713","https://openalex.org/W2020423770","https://openalex.org/W2021064499","https://openalex.org/W2026754060","https://openalex.org/W2029482176","https://openalex.org/W2030966943","https://openalex.org/W2032227091","https://openalex.org/W2038876634","https://openalex.org/W2042220296","https://openalex.org/W2045759308","https://openalex.org/W2047880111","https://openalex.org/W2055298722","https://openalex.org/W2056568233","https://openalex.org/W2057649639","https://openalex.org/W2058815839","https://openalex.org/W2059512646","https://openalex.org/W2062178985","https://openalex.org/W2062342894","https://openalex.org/W2063479108","https://openalex.org/W2065461553","https://openalex.org/W2068225247","https://openalex.org/W2068782468","https://openalex.org/W2074962254","https://openalex.org/W2075410484","https://openalex.org/W2076195270","https://openalex.org/W2081113657","https://openalex.org/W2096162193","https://openalex.org/W2096641211","https://openalex.org/W2097588807","https://openalex.org/W2097706568","https://openalex.org/W2101173184","https://openalex.org/W2101797035","https://openalex.org/W2102424972","https://openalex.org/W2103546861","https://openalex.org/W2109677628","https://openalex.org/W2110662079","https://openalex.org/W2110835349","https://openalex.org/W2116104082","https://openalex.org/W2116474217","https://openalex.org/W2119033868","https://openalex.org/W2119162865","https://openalex.org/W2119789666","https://openalex.org/W2120819924","https://openalex.org/W2121168074","https://openalex.org/W2121317739","https://openalex.org/W2123770356","https://openalex.org/W2124179485","https://openalex.org/W2124790653","https://openalex.org/W2127713506","https://openalex.org/W2129816388","https://openalex.org/W2129974570","https://openalex.org/W2130044459","https://openalex.org/W2134038527","https://openalex.org/W2134057866","https://openalex.org/W2136096754","https://openalex.org/W2138094991","https://openalex.org/W2138910980","https://openalex.org/W2140099453","https://openalex.org/W2140828324","https://openalex.org/W2141264884","https://openalex.org/W2141913814","https://openalex.org/W2144257829","https://openalex.org/W2144775551","https://openalex.org/W2145608399","https://openalex.org/W2146735768","https://openalex.org/W2148723086","https://openalex.org/W2149737737","https://openalex.org/W2150815933","https://openalex.org/W2152933358","https://openalex.org/W2153957254","https://openalex.org/W2154284350","https://openalex.org/W2156524622","https://openalex.org/W2164952840","https://openalex.org/W2259542615","https://openalex.org/W2322161894","https://openalex.org/W2468108813","https://openalex.org/W2574269559","https://openalex.org/W2885503280","https://openalex.org/W3143110774","https://openalex.org/W4205911826","https://openalex.org/W4232765377"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2657261411","https://openalex.org/W2069013776","https://openalex.org/W3118950109","https://openalex.org/W2038264393","https://openalex.org/W2059637021","https://openalex.org/W2378282666","https://openalex.org/W4210644918","https://openalex.org/W2243442814","https://openalex.org/W2068841895"],"abstract_inverted_index":{"Over":[0],"the":[1,12,43,57,72,104,110,128,134],"past":[2],"two":[3],"decades,":[4],"there":[5],"has":[6],"been":[7,22,54,70],"a":[8],"long-standing":[9],"debate":[10],"about":[11,71,103],"impact":[13,44,129],"of":[14,45,74,106,113,130,136],"taxon":[15,46,114,131],"sampling":[16,115,132],"on":[17,24,133],"phylogenetic":[18,117,137],"inference.":[19],"Studies":[20],"have":[21,53,69],"based":[23],"both":[25],"real":[26],"and":[27,33,36,87,109],"simulated":[28],"data":[29,59,107],"sets,":[30],"within":[31],"actual":[32],"theoretical":[34],"contexts,":[35],"using":[37,75,88],"different":[38,89],"inference":[39,118],"methods,":[40],"to":[41,67,99,124],"study":[42],"sampling.":[47],"In":[48],"some":[49],"cases,":[50],"conflicting":[51],"conclusions":[52],"drawn":[55],"for":[56],"same":[58],"set.":[60],"The":[61],"main":[62],"questions":[63,95],"explored":[64],"in":[65,116,126],"studies":[66],"date":[68,125],"effects":[73],"sparse":[76],"data,":[77],"adding":[78],"new":[79],"taxa,":[80],"including":[81],"more":[82,100],"characters":[83],"from":[84],"genome":[85],"sequences":[86],"(or":[90],"concatenated)":[91],"locus":[92],"regions.":[93],"These":[94],"can":[96],"be":[97],"reduced":[98],"fundamental":[101],"ones":[102],"assessment":[105],"quality":[108],"design":[111],"guidelines":[112],"experiments.":[119],"This":[120],"review":[121],"summarizes":[122],"progress":[123],"understanding":[127],"accuracy":[135],"analysis.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":27},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
