{"id":"https://openalex.org/W2140247752","doi":"https://doi.org/10.1093/bib/bbr010","title":"Tools for managing and analyzing microarray data","display_name":"Tools for managing and analyzing microarray data","publication_year":2011,"publication_date":"2011-03-21","ids":{"openalex":"https://openalex.org/W2140247752","doi":"https://doi.org/10.1093/bib/bbr010","mag":"2140247752","pmid":"https://pubmed.ncbi.nlm.nih.gov/21422065"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr010","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/46/582045/bbr010.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/1/46/582045/bbr010.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011792500","display_name":"Andr\u00e9 Koschmieder","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"A. Koschmieder","raw_affiliation_strings":["Department of Computer Science, Humboldt-Universit\u00e4t zu Berlin, Rudower Chaussee 25, 12489 Berlin, Germany. koschmie@informatik.hu-berlin.de","Department of Computer Science, Humboldt-Universit\u00e4t zu Berlin, Rudower Chaussee 25, 12489 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Humboldt-Universit\u00e4t zu Berlin, Rudower Chaussee 25, 12489 Berlin, Germany. koschmie@informatik.hu-berlin.de","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Department of Computer Science, Humboldt-Universit\u00e4t zu Berlin, Rudower Chaussee 25, 12489 Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039253778","display_name":"Karin Zimmermann","orcid":"https://orcid.org/0000-0002-6718-265X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. Zimmermann","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083353222","display_name":"Silke Tri\u00dfl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S. Trissl","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025918629","display_name":"Thomas Stoltmann","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Stoltmann","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"U. Leser","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011792500"],"corresponding_institution_ids":["https://openalex.org/I39343248"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.6058,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.90320013,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"1","first_page":"46","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7011114954948425},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5488043427467346},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.529823362827301},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5020363330841064},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43939143419265747},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4393620491027832},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4102305769920349},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33921322226524353},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.19886305928230286},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14646464586257935}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7011114954948425},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5488043427467346},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.529823362827301},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5020363330841064},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43939143419265747},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4393620491027832},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4102305769920349},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33921322226524353},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.19886305928230286},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14646464586257935},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbr010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr010","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/46/582045/bbr010.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21422065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21422065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbr010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr010","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/46/582045/bbr010.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140247752.pdf","grobid_xml":"https://content.openalex.org/works/W2140247752.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W4029110","https://openalex.org/W1118098720","https://openalex.org/W1503720499","https://openalex.org/W1516095885","https://openalex.org/W1533335653","https://openalex.org/W1702681437","https://openalex.org/W1756908435","https://openalex.org/W1967053372","https://openalex.org/W1970156673","https://openalex.org/W1981509058","https://openalex.org/W1982895329","https://openalex.org/W1990281533","https://openalex.org/W2001952613","https://openalex.org/W2003955359","https://openalex.org/W2006406918","https://openalex.org/W2023116290","https://openalex.org/W2053126761","https://openalex.org/W2077689651","https://openalex.org/W2080945966","https://openalex.org/W2083737836","https://openalex.org/W2087383805","https://openalex.org/W2087810003","https://openalex.org/W2094613397","https://openalex.org/W2096940705","https://openalex.org/W2106554405","https://openalex.org/W2107433421","https://openalex.org/W2108671185","https://openalex.org/W2119043225","https://openalex.org/W2120748901","https://openalex.org/W2121995533","https://openalex.org/W2122683221","https://openalex.org/W2130410032","https://openalex.org/W2132854417","https://openalex.org/W2133111499","https://openalex.org/W2133131759","https://openalex.org/W2138973161","https://openalex.org/W2149194035","https://openalex.org/W2152129478","https://openalex.org/W2152147743","https://openalex.org/W2154431984","https://openalex.org/W2160042082","https://openalex.org/W2163132655","https://openalex.org/W2168546553"],"related_works":["https://openalex.org/W2012531322","https://openalex.org/W2785900585","https://openalex.org/W2353730437","https://openalex.org/W2490303674","https://openalex.org/W2609066826","https://openalex.org/W2810752900","https://openalex.org/W2365677836","https://openalex.org/W2531295127","https://openalex.org/W3186538219","https://openalex.org/W2355063696"],"abstract_inverted_index":{"The":[0],"microarray-based":[1],"analysis":[2,146],"of":[3,18,40,43,66,71,74,96,119,144,147],"gene":[4],"expression":[5],"has":[6],"become":[7],"a":[8,25,52,67,92,110,120],"workhorse":[9],"for":[10,51,58,102,113],"biomedical":[11],"research.":[12],"Managing":[13],"the":[14,38,48,59,64,117,142],"amount":[15],"and":[16,81,99,104,134],"diversity":[17],"data":[19,122],"that":[20,27,137],"such":[21,72],"experiments":[22],"produce":[23],"is":[24,55],"task":[26],"must":[28],"be":[29],"supported":[30],"by":[31,131,156],"appropriate":[32],"software":[33],"tools,":[34,73],"which":[35,75,127],"led":[36],"to":[37],"creation":[39],"literally":[41],"hundreds":[42],"systems.":[44,158],"In":[45],"consequence,":[46],"choosing":[47],"right":[49],"tool":[50],"given":[53],"project":[54,115],"difficult":[56],"even":[57],"expert.":[60],"We":[61,86],"report":[62,87],"on":[63,88,94],"results":[65],"survey":[68,108],"encompassing":[69],"78":[70],"22":[76],"were":[77,83],"inspected":[78],"in":[79,141],"detail":[80],"seven":[82],"tested":[84],"hands-on.":[85],"our":[89,107],"experiences":[90],"with":[91],"focus":[93],"completeness":[95],"functionality,":[97],"ease-of-use,":[98],"necessary":[100],"effort":[101],"installation":[103],"maintenance.":[105],"Thereby,":[106],"provides":[109],"valuable":[111],"guideline":[112],"any":[114],"considering":[116],"use":[118],"microarray":[121],"management":[123],"system.":[124],"It":[125],"reveals":[126],"tasks":[128],"are":[129,151],"covered":[130],"mature":[132],"tools":[133],"also":[135],"shows":[136],"important":[138],"requirements,":[139],"especially":[140],"area":[143],"integrated":[145],"different":[148],"experimental":[149],"data,":[150],"not":[152],"yet":[153],"met":[154],"satisfyingly":[155],"existing":[157]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
