{"id":"https://openalex.org/W2007622742","doi":"https://doi.org/10.1093/bib/bbr003","title":"Building an HIV data mashup using Bio2RDF","display_name":"Building an HIV data mashup using Bio2RDF","publication_year":2011,"publication_date":"2011-03-24","ids":{"openalex":"https://openalex.org/W2007622742","doi":"https://doi.org/10.1093/bib/bbr003","mag":"2007622742","pmid":"https://pubmed.ncbi.nlm.nih.gov/22223742"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbr003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr003","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/98/580436/bbr003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/1/98/580436/bbr003.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075519852","display_name":"Marc-Alexandre Nolin","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"M.-A. Nolin","raw_affiliation_strings":["Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, Canada K1S 5B6","Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, Canada K1S 5B6,"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, Canada K1S 5B6","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, Canada K1S 5B6,","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Dumontier","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108584265","display_name":"Fran\u00e7ois Belleau","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Belleau","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5008649323","display_name":"Jacques Corbeil","orcid":"https://orcid.org/0000-0002-9973-2740"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Corbeil","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075519852"],"corresponding_institution_ids":["https://openalex.org/I67031392"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.9543,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.85684502,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"1","first_page":"98","last_page":"106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.7681145668029785},{"id":"https://openalex.org/keywords/mashup","display_name":"Mashup","score":0.6463354825973511},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.606300413608551},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5661565065383911},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4825248420238495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3765503764152527},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35235023498535156},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2732074558734894},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25278913974761963},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.22543025016784668},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.12240523099899292},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1040559709072113}],"concepts":[{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.7681145668029785},{"id":"https://openalex.org/C196126337","wikidata":"https://www.wikidata.org/wiki/Q821080","display_name":"Mashup","level":4,"score":0.6463354825973511},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.606300413608551},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5661565065383911},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4825248420238495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3765503764152527},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35235023498535156},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2732074558734894},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25278913974761963},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.22543025016784668},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.12240523099899292},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1040559709072113},{"id":"https://openalex.org/C182321512","wikidata":"https://www.wikidata.org/wiki/Q1153289","display_name":"Web standards","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbr003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr003","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/98/580436/bbr003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22223742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22223742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/792c300c-f72f-4640-be22-c5e8bf0bda44","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/792c300c-f72f-4640-be22-c5e8bf0bda44","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nolin, M-A, Dumontier, M, Belleau, F & Corbeil, J 2012, 'Building an HIV data mashup using Bio2RDF', Briefings in Bioinformatics, vol. 13, no. 1, pp. 98-106. https://doi.org/10.1093/bib/bbr003","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bib/bbr003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbr003","pdf_url":"https://academic.oup.com/bib/article-pdf/13/1/98/580436/bbr003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007622742.pdf","grobid_xml":"https://content.openalex.org/works/W2007622742.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1966546784","https://openalex.org/W2015191210","https://openalex.org/W2047017978","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2108177663","https://openalex.org/W2117513900","https://openalex.org/W2118675686","https://openalex.org/W2118977923","https://openalex.org/W2137653635","https://openalex.org/W2143543488","https://openalex.org/W2163424852","https://openalex.org/W2165428180","https://openalex.org/W2169080911","https://openalex.org/W2335973386","https://openalex.org/W2628074563"],"related_works":["https://openalex.org/W4281746858","https://openalex.org/W2528531402","https://openalex.org/W182654595","https://openalex.org/W2347219288","https://openalex.org/W2581510556","https://openalex.org/W2366221835","https://openalex.org/W837996762","https://openalex.org/W2185213704","https://openalex.org/W2039646666","https://openalex.org/W2007622742"],"abstract_inverted_index":{"We":[0],"present":[1],"an":[2],"update":[3],"to":[4,22,73],"the":[5,23,26,64,74,80],"Bio2RDF":[6],"Linked":[7],"Data":[8],"Network,":[9],"which":[10],"now":[11],"comprises":[12],"\u223c30":[13],"billion":[14],"statements":[15],"across":[16],"30":[17],"data":[18,32,61],"sets.":[19],"Significant":[20],"changes":[21],"framework":[24],"include":[25],"accommodation":[27],"of":[28,42,46,76],"global":[29],"mirrors,":[30],"offline":[31],"processing":[33],"and":[34,37,59],"new":[35,44],"search":[36],"integration":[38],"services.":[39],"The":[40],"utility":[41],"this":[43],"network":[45],"knowledge":[47],"is":[48],"illustrated":[49],"through":[50],"a":[51],"Bio2RDF-based":[52],"mashup":[53],"with":[54,71,79],"microarray":[55],"gene":[56],"expression":[57],"results":[58],"interaction":[60],"obtained":[62],"from":[63],"HIV-1,":[65],"Human":[66],"Protein":[67],"Interaction":[68],"Database":[69],"(HHPID)":[70],"respect":[72],"infection":[75],"human":[77,81],"macrophages":[78],"immunodeficiency":[82],"virus":[83],"type":[84],"1":[85],"(HIV-1).":[86]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
