{"id":"https://openalex.org/W2150301509","doi":"https://doi.org/10.1093/bib/bbq082","title":"Literature-aided interpretation of gene expression data with the weighted global test","display_name":"Literature-aided interpretation of gene expression data with the weighted global test","publication_year":2010,"publication_date":"2010-12-22","ids":{"openalex":"https://openalex.org/W2150301509","doi":"https://doi.org/10.1093/bib/bbq082","mag":"2150301509","pmid":"https://pubmed.ncbi.nlm.nih.gov/21183478"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbq082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq082","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/518/748201/bbq082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/12/5/518/748201/bbq082.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052006543","display_name":"Rob Jelier","orcid":"https://orcid.org/0000-0002-6395-1407"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"R. Jelier","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","CRG Systems Biology Research Unit in Barcelona"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032056430","display_name":"Jelle J. Goeman","orcid":"https://orcid.org/0000-0003-4283-0259"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"J. J. Goeman","raw_affiliation_strings":["Medical Informatics of the Erasmus MC Rotterdam and the","CRG Systems Biology Research Unit in Barcelona"],"affiliations":[{"raw_affiliation_string":"Medical Informatics of the Erasmus MC Rotterdam and the","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]},{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029869005","display_name":"Kristina Hettne","orcid":"https://orcid.org/0000-0002-4182-7560"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. M. Hettne","raw_affiliation_strings":["CRG Systems Biology Research Unit in Barcelona"],"affiliations":[{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077586396","display_name":"Martijn J. Schuemie","orcid":"https://orcid.org/0000-0002-0817-5361"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. J. Schuemie","raw_affiliation_strings":["CRG Systems Biology Research Unit in Barcelona"],"affiliations":[{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040120668","display_name":"Johan T. den Dunnen","orcid":"https://orcid.org/0000-0002-6304-1710"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. T. den Dunnen","raw_affiliation_strings":["CRG Systems Biology Research Unit in Barcelona"],"affiliations":[{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021033668","display_name":"Peter A.C. \u2019t Hoen","orcid":"https://orcid.org/0000-0003-4450-3112"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. A. C. 't Hoen","raw_affiliation_strings":["CRG Systems Biology Research Unit in Barcelona","Department of Human Genetics, head of the Leiden Genome Technology Center,"],"affiliations":[{"raw_affiliation_string":"CRG Systems Biology Research Unit in Barcelona","institution_ids":[]},{"raw_affiliation_string":"Department of Human Genetics, head of the Leiden Genome Technology Center,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052006543"],"corresponding_institution_ids":["https://openalex.org/I2800006345"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.4909,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.81818899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"5","first_page":"518","last_page":"529"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6117335557937622},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.5891574025154114},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5393843650817871},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.49118873476982117},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.48277607560157776},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47986048460006714},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4700663983821869},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.46243488788604736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.440848171710968},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4222894310951233},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3629072904586792},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.31005406379699707},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29363706707954407},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2671765685081482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21101248264312744},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11312180757522583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6117335557937622},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.5891574025154114},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5393843650817871},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.49118873476982117},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.48277607560157776},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47986048460006714},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4700663983821869},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.46243488788604736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.440848171710968},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4222894310951233},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3629072904586792},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.31005406379699707},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29363706707954407},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2671765685081482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21101248264312744},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11312180757522583},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1093/bib/bbq082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq082","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/518/748201/bbq082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21183478","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21183478","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/ae8d106f-b096-4016-bf94-f950449a87b7","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/ae8d106f-b096-4016-bf94-f950449a87b7","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Jelier, R, Goeman, J J, Hettne, K M, Schuemie, M J, den Dunnen, J & 't Hoen, P A C 2011, 'Literature-aided interpretation of gene expression data with the weighted global test', Briefings in Bioinformatics, vol. 12, no. 5, pp. 518-529. https://doi.org/10.1093/bib/bbq082","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.eur.nl:publications/0318acb7-6c7b-4926-8e15-ec45360359ad","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/0318acb7-6c7b-4926-8e15-ec45360359ad","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Jelier, R, Goeman, JJ, Hettne, K, Schuemie, M, den Dunnen, J & 't Hoen, PAC 2011, 'Literature-aided interpretation of gene expression data with the weighted global test', Briefings in Bioinformatics, vol. 12, no. 5, pp. 518-529. https://doi.org/10.1093/bib/bbq082","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:lumc:oai:openaccess.leidenuniv.nl:1887/109566","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/109566","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"VOLUME=12;ISSUE=5;STARTPAGE=518;ENDPAGE=529;TITLE=None","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/423338","is_oa":false,"landing_page_url":"https://lirias.kuleuven.be/bitstream/123456789/423338/1/Brief%20Bioinform-2011-Jelier-518-29.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, vol. 12 (5), (518-529)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:openaccess.leidenuniv.nl:1887/79911","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/79911","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/bib/article/12/5/518/268711","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:pure.eur.nl:openaire_cris_publications/0318acb7-6c7b-4926-8e15-ec45360359ad","is_oa":false,"landing_page_url":"http://hdl.handle.net/1765/34361","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jelier, R, Goeman, JJ, Hettne, K, Schuemie, M, den Dunnen, J & 't Hoen, PAC 2011, 'Literature-aided interpretation of gene expression data with the weighted global test', Briefings in Bioinformatics, vol. 12, no. 5, pp. 518-529. https://doi.org/10.1093/bib/bbq082","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2973588","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/79911","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in bioinformatics","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3012573","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/109566","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bib/bbq082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq082","pdf_url":"https://academic.oup.com/bib/article-pdf/12/5/518/748201/bbq082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150301509.pdf","grobid_xml":"https://content.openalex.org/works/W2150301509.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W27756906","https://openalex.org/W1739940154","https://openalex.org/W1829379010","https://openalex.org/W1966817783","https://openalex.org/W1967990571","https://openalex.org/W1981307375","https://openalex.org/W1986104055","https://openalex.org/W2015954361","https://openalex.org/W2018637188","https://openalex.org/W2031288274","https://openalex.org/W2040177382","https://openalex.org/W2040679153","https://openalex.org/W2064802889","https://openalex.org/W2075011348","https://openalex.org/W2079137604","https://openalex.org/W2079982743","https://openalex.org/W2080948989","https://openalex.org/W2095517739","https://openalex.org/W2096525273","https://openalex.org/W2096939566","https://openalex.org/W2097771645","https://openalex.org/W2101288329","https://openalex.org/W2103017472","https://openalex.org/W2103476865","https://openalex.org/W2111776022","https://openalex.org/W2112723752","https://openalex.org/W2114496328","https://openalex.org/W2115159360","https://openalex.org/W2116106292","https://openalex.org/W2116166762","https://openalex.org/W2118069309","https://openalex.org/W2118308152","https://openalex.org/W2119634636","https://openalex.org/W2121003871","https://openalex.org/W2121048111","https://openalex.org/W2121244856","https://openalex.org/W2122084873","https://openalex.org/W2123083582","https://openalex.org/W2123106337","https://openalex.org/W2127499728","https://openalex.org/W2128985829","https://openalex.org/W2130410032","https://openalex.org/W2132972409","https://openalex.org/W2133465414","https://openalex.org/W2134736660","https://openalex.org/W2135063148","https://openalex.org/W2135230352","https://openalex.org/W2137464304","https://openalex.org/W2139036189","https://openalex.org/W2141440967","https://openalex.org/W2142063400","https://openalex.org/W2145218153","https://openalex.org/W2145412406","https://openalex.org/W2149942697","https://openalex.org/W2150414518","https://openalex.org/W2156814909","https://openalex.org/W2157870551","https://openalex.org/W2158323345","https://openalex.org/W2159008270","https://openalex.org/W2159203162","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2160450758","https://openalex.org/W2161027523","https://openalex.org/W2161062388","https://openalex.org/W2163596704","https://openalex.org/W2168662600","https://openalex.org/W2168696894","https://openalex.org/W2168817998","https://openalex.org/W2168881898","https://openalex.org/W2171599819","https://openalex.org/W2772934464","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2068663075","https://openalex.org/W4205140848","https://openalex.org/W2978678743","https://openalex.org/W2797837731","https://openalex.org/W2150344375","https://openalex.org/W829257147","https://openalex.org/W3081389670","https://openalex.org/W4390832911","https://openalex.org/W4385302116","https://openalex.org/W2165912799"],"abstract_inverted_index":{"Most":[0],"methods":[1],"for":[2,62,92,109,150,185,230],"the":[3,12,19,28,63,77,93,114,139,145,151,173,183,198,217,228,231],"interpretation":[4,64,78,232],"of":[5,14,65,79,95,105,113,133,147,153,168,175,187,202,216,233],"gene":[6,66,96,117,149,162,188],"expression":[7,67,97,118,189],"profiling":[8,68],"experiments":[9],"rely":[10],"on":[11],"categorization":[13],"genes,":[15],"as":[16],"provided":[17],"by":[18,85],"Gene":[20],"Ontology":[21],"(GO)":[22],"and":[23,37,44,90,102,120,125,143,197,200,212],"pathway":[24],"databases.":[25],"Due":[26],"to":[27,39,191,227],"manual":[29],"curation":[30],"process,":[31],"such":[32],"databases":[33],"are":[34,138,223],"never":[35],"up-to-date":[36],"tend":[38],"be":[40,60],"limited":[41],"in":[42,129,172,194],"focus":[43],"coverage.":[45],"Automated":[46],"literature":[47,121,140,207],"mining":[48,208,221],"tools":[49,209,222],"provide":[50],"an":[51],"attractive,":[52],"alternative":[53,88],"approach.":[54],"We":[55,70,181],"review":[56],"how":[57],"they":[58],"can":[59],"employed":[61],"experiments.":[69],"illustrate":[71],"that":[72,166],"their":[73],"comprehensive":[74],"scope":[75],"aids":[76],"data":[80,190],"from":[81],"domains":[82],"poorly":[83],"covered":[84],"GO":[86,179],"or":[87],"databases,":[89],"allows":[91,213],"linking":[94,186],"with":[98,159,205],"diseases,":[99],"drugs,":[100],"tissues":[101],"other":[103],"types":[104],"concepts.":[106],"A":[107],"framework":[108],"proper":[110],"statistical":[111],"evaluation":[112],"associations":[115,170],"between":[116],"values":[119],"concepts":[122],"was":[123],"lacking":[124],"is":[126],"now":[127],"implemented":[128],"a":[130,148,156],"weighted":[131],"extension":[132],"global":[134],"test.":[135],"The":[136],"weights":[137],"association":[141],"scores":[142],"reflect":[144],"importance":[146],"concept":[152],"interest.":[154],"In":[155],"direct":[157],"comparison":[158],"classical":[160],"GO-based":[161],"sets,":[163],"we":[164],"show":[165],"use":[167],"literature-based":[169],"results":[171],"identification":[174],"much":[176],"more":[177],"specific":[178],"categories.":[180],"demonstrate":[182],"possibilities":[184],"patient":[192],"survival":[193],"breast":[195],"cancer":[196],"action":[199],"metabolism":[201],"drugs.":[203],"Coupling":[204],"online":[206],"ensures":[210],"transparency":[211],"further":[214],"study":[215],"identified":[218],"associations.":[219],"Literature":[220],"therefore":[224],"powerful":[225],"additions":[226],"toolbox":[229],"high-throughput":[234],"genomics":[235],"data.":[236]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
