{"id":"https://openalex.org/W2139523199","doi":"https://doi.org/10.1093/bib/bbq029","title":"A model for Bioinformatics training: the marine biological laboratory","display_name":"A model for Bioinformatics training: the marine biological laboratory","publication_year":2010,"publication_date":"2010-07-25","ids":{"openalex":"https://openalex.org/W2139523199","doi":"https://doi.org/10.1093/bib/bbq029","mag":"2139523199","pmid":"https://pubmed.ncbi.nlm.nih.gov/20660497"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036745300","display_name":"Gabrielli Harumi Yamashita","orcid":"https://orcid.org/0000-0001-8023-1041"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G. Yamashita","raw_affiliation_strings":["Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA. grant.yamashita@asu.edu","Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA"],"affiliations":[{"raw_affiliation_string":"Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA. grant.yamashita@asu.edu","institution_ids":[]},{"raw_affiliation_string":"Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102728055","display_name":"Holly Miller","orcid":"https://orcid.org/0000-0002-9076-5335"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Miller","raw_affiliation_strings":["; Science Informatics Group"],"affiliations":[{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081820928","display_name":"Alan D. Goddard","orcid":"https://orcid.org/0000-0003-4950-7470"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Goddard","raw_affiliation_strings":["; Science Informatics Group"],"affiliations":[{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112183239","display_name":"Catherine N. Norton","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Norton","raw_affiliation_strings":["; Science Informatics Group"],"affiliations":[{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036745300"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.2711,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60226236,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"6","first_page":"610","last_page":"615"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.8632688522338867},{"id":"https://openalex.org/keywords/engineering-informatics","display_name":"Engineering informatics","score":0.6369165182113647},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5816284418106079},{"id":"https://openalex.org/keywords/health-administration-informatics","display_name":"Health Administration Informatics","score":0.5517926216125488},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.5037471652030945},{"id":"https://openalex.org/keywords/business-informatics","display_name":"Business informatics","score":0.5027651786804199},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4750126302242279},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43129271268844604},{"id":"https://openalex.org/keywords/engineering-ethics","display_name":"Engineering ethics","score":0.3825400769710541},{"id":"https://openalex.org/keywords/engineering-management","display_name":"Engineering management","score":0.3372041881084442},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.33062273263931274},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.20055797696113586},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18008187413215637}],"concepts":[{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.8632688522338867},{"id":"https://openalex.org/C158518442","wikidata":"https://www.wikidata.org/wiki/Q2843902","display_name":"Engineering informatics","level":4,"score":0.6369165182113647},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5816284418106079},{"id":"https://openalex.org/C141363852","wikidata":"https://www.wikidata.org/wiki/Q5690441","display_name":"Health Administration Informatics","level":4,"score":0.5517926216125488},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.5037471652030945},{"id":"https://openalex.org/C27518888","wikidata":"https://www.wikidata.org/wiki/Q126552","display_name":"Business informatics","level":4,"score":0.5027651786804199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4750126302242279},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43129271268844604},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.3825400769710541},{"id":"https://openalex.org/C110354214","wikidata":"https://www.wikidata.org/wiki/Q6314146","display_name":"Engineering management","level":1,"score":0.3372041881084442},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.33062273263931274},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.20055797696113586},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18008187413215637},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20660497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20660497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:darchive.mblwhoilibrary.org:1912/3855","is_oa":false,"landing_page_url":"https://hdl.handle.net/1912/3855","pdf_url":null,"source":{"id":"https://openalex.org/S4306400781","display_name":"Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.6200000047683716,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139523199.pdf","grobid_xml":"https://content.openalex.org/works/W2139523199.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1566669527","https://openalex.org/W1705720512","https://openalex.org/W1976518102","https://openalex.org/W1982828185","https://openalex.org/W2041063545","https://openalex.org/W2084320299","https://openalex.org/W2137079713","https://openalex.org/W2146764278","https://openalex.org/W2330663109","https://openalex.org/W2418334279"],"related_works":["https://openalex.org/W3153514346","https://openalex.org/W2559498555","https://openalex.org/W2416869087","https://openalex.org/W2361870466","https://openalex.org/W2015849715","https://openalex.org/W4234048731","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W1971571384","https://openalex.org/W3129117446"],"abstract_inverted_index":{"Many":[0],"areas":[1],"of":[2,36,80,95],"science":[3,173],"such":[4],"as":[5],"biology,":[6],"medicine":[7],"and":[8,14,32,51,57,61,74,104,110,124,146,158,167],"oceanography":[9],"are":[10,28,44],"becoming":[11],"increasingly":[12],"data-rich":[13],"most":[15],"programs":[16],"that":[17,27],"train":[18],"scientists":[19,41,47,109,160],"do":[20],"not":[21],"address":[22],"informatics":[23,43,64,81,143,148,166,174],"techniques":[24],"or":[25],"technologies":[26],"necessary":[29],"for":[30,40,100,171],"managing":[31],"analysing":[33],"large":[34],"amounts":[35],"data.":[37],"Educational":[38],"resources":[39],"in":[42,63,77,83,113,165],"scarce,":[45],"yet":[46],"need":[48],"the":[49,84,92,131,136],"skills":[50],"knowledge":[52],"to":[53,91,107,138],"work":[54,152],"with":[55,153],"informaticians":[56],"manage":[58],"graduate":[59],"students":[60],"post-docs":[62],"projects.":[65],"The":[66,86],"Marine":[67],"Biological":[68],"Laboratory":[69],"houses":[70],"a":[71,78,122,169],"world-renowned":[72],"library":[73],"is":[75,105,144,168],"involved":[76],"number":[79],"projects":[82],"sciences.":[85],"MBL":[87,137],"has":[88],"been":[89],"home":[90],"National":[93],"Library":[94],"Medicine's":[96],"BioMedical":[97],"Informatics":[98,133],"Course":[99],"nearly":[101],"two":[102],"decades":[103],"committed":[106],"educating":[108],"other":[111,159],"scholars":[112],"informatics.":[114],"In":[115],"an":[116,162],"innovative,":[117],"immersive":[118],"learning":[119],"experience,":[120],"G.Y.,":[121],"biologist":[123],"post-doc":[125],"at":[126,135],"Arizona":[127],"State":[128],"University,":[129],"visited":[130],"Science":[132],"Group":[134],"learn":[139],"first":[140],"hand":[141],"how":[142,147],"done":[145],"teams":[149],"work.":[150],"Hands-on":[151],"developers,":[154],"systems":[155],"administrators,":[156],"librarians":[157],"provided":[161],"invaluable":[163],"education":[164],"model":[170],"future":[172],"training.":[175]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
