{"id":"https://openalex.org/W2139523199","doi":"https://doi.org/10.1093/bib/bbq029","title":"A model for Bioinformatics training: the marine biological laboratory","display_name":"A model for Bioinformatics training: the marine biological laboratory","publication_year":2010,"publication_date":"2010-07-25","ids":{"openalex":"https://openalex.org/W2139523199","doi":"https://doi.org/10.1093/bib/bbq029","mag":"2139523199","pmid":"https://pubmed.ncbi.nlm.nih.gov/20660497"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036745300","display_name":"Gabrielli Harumi Yamashita","orcid":"https://orcid.org/0000-0001-8023-1041"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Yamashita","raw_affiliation_strings":["Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA. grant.yamashita@asu.edu","Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA. grant.yamashita@asu.edu","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Arizona State University, PO Box 873301, Tempe, AZ 85287-3301, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102728055","display_name":"Holly Miller","orcid":"https://orcid.org/0000-0002-9076-5335"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Miller","raw_affiliation_strings":["; Science Informatics Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081820928","display_name":"Alan D. Goddard","orcid":"https://orcid.org/0000-0003-4950-7470"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Goddard","raw_affiliation_strings":["; Science Informatics Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112183239","display_name":"Catherine N. Norton","orcid":null},"institutions":[{"id":"https://openalex.org/I2801777058","display_name":"Heritage Preservation","ror":"https://ror.org/04byvwj54","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2801777058"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Norton","raw_affiliation_strings":["Cathy Norton is the Director of the MBLWHOI Library and Vice Chair of the Biodiversity Heritage Library. She has been the PI on the BioMedical Informatics course for >20 years and also manages the Information Technology Department at the MBL. Her current interests are in provenance and preservation of digital assets and open access to scientific literature and data sets","; Science Informatics Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cathy Norton is the Director of the MBLWHOI Library and Vice Chair of the Biodiversity Heritage Library. She has been the PI on the BioMedical Informatics course for >20 years and also manages the Information Technology Department at the MBL. Her current interests are in provenance and preservation of digital assets and open access to scientific literature and data sets","institution_ids":["https://openalex.org/I2801777058"]},{"raw_affiliation_string":"; Science Informatics Group","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.2723,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60405943,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"6","first_page":"610","last_page":"615"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.8632688522338867},{"id":"https://openalex.org/keywords/engineering-informatics","display_name":"Engineering informatics","score":0.6369165182113647},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5816284418106079},{"id":"https://openalex.org/keywords/health-administration-informatics","display_name":"Health Administration Informatics","score":0.5517926216125488},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.5037471652030945},{"id":"https://openalex.org/keywords/business-informatics","display_name":"Business informatics","score":0.5027651786804199},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4750126302242279},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43129271268844604},{"id":"https://openalex.org/keywords/engineering-ethics","display_name":"Engineering ethics","score":0.3825400769710541},{"id":"https://openalex.org/keywords/engineering-management","display_name":"Engineering management","score":0.3372041881084442},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.33062273263931274},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.20055797696113586},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18008187413215637}],"concepts":[{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.8632688522338867},{"id":"https://openalex.org/C158518442","wikidata":"https://www.wikidata.org/wiki/Q2843902","display_name":"Engineering informatics","level":4,"score":0.6369165182113647},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5816284418106079},{"id":"https://openalex.org/C141363852","wikidata":"https://www.wikidata.org/wiki/Q5690441","display_name":"Health Administration Informatics","level":4,"score":0.5517926216125488},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.5037471652030945},{"id":"https://openalex.org/C27518888","wikidata":"https://www.wikidata.org/wiki/Q126552","display_name":"Business informatics","level":4,"score":0.5027651786804199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4750126302242279},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43129271268844604},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.3825400769710541},{"id":"https://openalex.org/C110354214","wikidata":"https://www.wikidata.org/wiki/Q6314146","display_name":"Engineering management","level":1,"score":0.3372041881084442},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.33062273263931274},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.20055797696113586},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18008187413215637},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008386","descriptor_name":"Marine Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017145","descriptor_name":"Models, Educational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20660497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20660497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:darchive.mblwhoilibrary.org:1912/3855","is_oa":false,"landing_page_url":"https://hdl.handle.net/1912/3855","pdf_url":null,"source":{"id":"https://openalex.org/S4306400781","display_name":"Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.1093/bib/bbq029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq029","pdf_url":"https://academic.oup.com/bib/article-pdf/11/6/610/444933/bbq029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139523199.pdf","grobid_xml":"https://content.openalex.org/works/W2139523199.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1566669527","https://openalex.org/W1705720512","https://openalex.org/W1976518102","https://openalex.org/W1982828185","https://openalex.org/W2041063545","https://openalex.org/W2084320299","https://openalex.org/W2137079713","https://openalex.org/W2146764278","https://openalex.org/W2330663109","https://openalex.org/W2418334279"],"related_works":["https://openalex.org/W3153514346","https://openalex.org/W2559498555","https://openalex.org/W2416869087","https://openalex.org/W2361870466","https://openalex.org/W2015849715","https://openalex.org/W4234048731","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W1971571384","https://openalex.org/W3129117446"],"abstract_inverted_index":{"Many":[0],"areas":[1],"of":[2,36,80,95],"science":[3,173],"such":[4],"as":[5],"biology,":[6],"medicine":[7],"and":[8,14,32,51,57,61,74,104,110,124,146,158,167],"oceanography":[9],"are":[10,28,44],"becoming":[11],"increasingly":[12],"data-rich":[13],"most":[15],"programs":[16],"that":[17,27],"train":[18],"scientists":[19,41,47,109,160],"do":[20],"not":[21],"address":[22],"informatics":[23,43,64,81,143,148,166,174],"techniques":[24],"or":[25],"technologies":[26],"necessary":[29],"for":[30,40,100,171],"managing":[31],"analysing":[33],"large":[34],"amounts":[35],"data.":[37],"Educational":[38],"resources":[39],"in":[42,63,77,83,113,165],"scarce,":[45],"yet":[46],"need":[48],"the":[49,84,92,131,136],"skills":[50],"knowledge":[52],"to":[53,91,107,138],"work":[54,152],"with":[55,153],"informaticians":[56],"manage":[58],"graduate":[59],"students":[60],"post-docs":[62],"projects.":[65],"The":[66,86],"Marine":[67],"Biological":[68],"Laboratory":[69],"houses":[70],"a":[71,78,122,169],"world-renowned":[72],"library":[73],"is":[75,105,144,168],"involved":[76],"number":[79],"projects":[82],"sciences.":[85],"MBL":[87,137],"has":[88],"been":[89],"home":[90],"National":[93],"Library":[94],"Medicine's":[96],"BioMedical":[97],"Informatics":[98,133],"Course":[99],"nearly":[101],"two":[102],"decades":[103],"committed":[106],"educating":[108],"other":[111,159],"scholars":[112],"informatics.":[114],"In":[115],"an":[116,162],"innovative,":[117],"immersive":[118],"learning":[119],"experience,":[120],"G.Y.,":[121],"biologist":[123],"post-doc":[125],"at":[126,135],"Arizona":[127],"State":[128],"University,":[129],"visited":[130],"Science":[132],"Group":[134],"learn":[139],"first":[140],"hand":[141],"how":[142,147],"done":[145],"teams":[149],"work.":[150],"Hands-on":[151],"developers,":[154],"systems":[155],"administrators,":[156],"librarians":[157],"provided":[161],"invaluable":[163],"education":[164],"model":[170],"future":[172],"training.":[175]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
