{"id":"https://openalex.org/W2103154918","doi":"https://doi.org/10.1093/bib/bbq016","title":"Challenges of sequencing human genomes","display_name":"Challenges of sequencing human genomes","publication_year":2010,"publication_date":"2010-06-02","ids":{"openalex":"https://openalex.org/W2103154918","doi":"https://doi.org/10.1093/bib/bbq016","mag":"2103154918","pmid":"https://pubmed.ncbi.nlm.nih.gov/20519329"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbq016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq016","pdf_url":"https://academic.oup.com/bib/article-pdf/11/5/484/4860469/bbq016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/11/5/484/4860469/bbq016.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022808238","display_name":"Daniel C. Koboldt","orcid":"https://orcid.org/0000-0002-7290-3482"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. C. Koboldt","raw_affiliation_strings":["The Genome Center at Washington University, St. Louis, Missouri 63108, USA. dkoboldt@genome.wustl.edu","The Genome Center at Washington University, St Louis, Missouri 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Center at Washington University, St. Louis, Missouri 63108, USA. dkoboldt@genome.wustl.edu","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"The Genome Center at Washington University, St Louis, Missouri 63108, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449520","display_name":"Li Ding","orcid":"https://orcid.org/0000-0003-1517-2975"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Ding","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054642128","display_name":"Elaine R. Mardis","orcid":"https://orcid.org/0000-0002-5892-1553"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. R. Mardis","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5072171729","display_name":"Rick K. Wilson","orcid":"https://orcid.org/0000-0003-4278-7721"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. K. Wilson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":8.8329,"has_fulltext":false,"cited_by_count":155,"citation_normalized_percentile":{"value":0.98649439,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"11","issue":"5","first_page":"484","last_page":"498"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.624042272567749},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5731651782989502},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.5542850494384766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5431597828865051},{"id":"https://openalex.org/keywords/emerging-technologies","display_name":"Emerging technologies","score":0.48420217633247375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41206637024879456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3047124743461609},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15930843353271484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1142561137676239},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.10544329881668091}],"concepts":[{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.624042272567749},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5731651782989502},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.5542850494384766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5431597828865051},{"id":"https://openalex.org/C207267971","wikidata":"https://www.wikidata.org/wiki/Q120208","display_name":"Emerging technologies","level":2,"score":0.48420217633247375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41206637024879456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3047124743461609},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15930843353271484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1142561137676239},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.10544329881668091}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbq016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq016","pdf_url":"https://academic.oup.com/bib/article-pdf/11/5/484/4860469/bbq016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20519329","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20519329","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2980933","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2980933","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbq016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbq016","pdf_url":"https://academic.oup.com/bib/article-pdf/11/5/484/4860469/bbq016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G3782257663","display_name":null,"funder_award_id":"HG003079","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W1966822396","https://openalex.org/W1969596239","https://openalex.org/W1973878786","https://openalex.org/W1973950074","https://openalex.org/W1977744696","https://openalex.org/W1981509058","https://openalex.org/W1990073900","https://openalex.org/W2001725958","https://openalex.org/W2004834404","https://openalex.org/W2012016911","https://openalex.org/W2020154367","https://openalex.org/W2024975965","https://openalex.org/W2030692069","https://openalex.org/W2037113830","https://openalex.org/W2039785774","https://openalex.org/W2044117548","https://openalex.org/W2044120083","https://openalex.org/W2050287351","https://openalex.org/W2057073871","https://openalex.org/W2065817684","https://openalex.org/W2082376103","https://openalex.org/W2091151261","https://openalex.org/W2097341408","https://openalex.org/W2103441770","https://openalex.org/W2104806799","https://openalex.org/W2105588144","https://openalex.org/W2106160411","https://openalex.org/W2107688500","https://openalex.org/W2108166985","https://openalex.org/W2108234281","https://openalex.org/W2108698786","https://openalex.org/W2112113834","https://openalex.org/W2112491476","https://openalex.org/W2113649367","https://openalex.org/W2118246164","https://openalex.org/W2121531763","https://openalex.org/W2122732537","https://openalex.org/W2124960286","https://openalex.org/W2124985265","https://openalex.org/W2127515057","https://openalex.org/W2128114769","https://openalex.org/W2130701492","https://openalex.org/W2133105226","https://openalex.org/W2133980123","https://openalex.org/W2134061682","https://openalex.org/W2136145671","https://openalex.org/W2137064107","https://openalex.org/W2137779717","https://openalex.org/W2138603354","https://openalex.org/W2139216037","https://openalex.org/W2140869203","https://openalex.org/W2142619120","https://openalex.org/W2143196035","https://openalex.org/W2147354890","https://openalex.org/W2149509300","https://openalex.org/W2150677022","https://openalex.org/W2152036878","https://openalex.org/W2153010521","https://openalex.org/W2153527981","https://openalex.org/W2154397429","https://openalex.org/W2158297569","https://openalex.org/W2160825263","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2161815151","https://openalex.org/W2164631010","https://openalex.org/W2165748644","https://openalex.org/W2168142506","https://openalex.org/W2616754551","https://openalex.org/W4230366363"],"related_works":["https://openalex.org/W2887244195","https://openalex.org/W4390966252","https://openalex.org/W2045300430","https://openalex.org/W2522810657","https://openalex.org/W4383426117","https://openalex.org/W3082388066","https://openalex.org/W2755819208","https://openalex.org/W2343109370","https://openalex.org/W2934828429","https://openalex.org/W2520518209"],"abstract_inverted_index":{"Massively":[0],"parallel":[1],"sequencing":[2,16,19],"technologies":[3],"continue":[4],"to":[5,28,37,80,119,127,144],"alter":[6],"the":[7,13,29,39,74,92,129,138,146],"study":[8],"of":[9,15,41,84,100,104,131,149],"human":[10,46],"genetics.":[11],"As":[12],"cost":[14],"declines,":[17],"next-generation":[18],"(NGS)":[20],"instruments":[21],"and":[22,55,65,97,122],"datasets":[23],"will":[24],"become":[25,70],"increasingly":[26,71],"accessible":[27],"wider":[30],"research":[31,121],"community.":[32],"Investigators":[33],"are":[34],"understandably":[35],"eager":[36],"harness":[38],"power":[40],"these":[42,49],"new":[43],"technologies.":[44],"Sequencing":[45],"genomes":[47],"on":[48],"platforms,":[50],"however,":[51],"presents":[52],"numerous":[53],"production":[54,81],"bioinformatics":[56],"challenges.":[57],"Production":[58],"issues":[59],"like":[60],"sample":[61],"contamination,":[62],"library":[63],"chimaeras":[64],"variable":[66],"run":[67],"quality":[68],"have":[69],"problematic":[72],"in":[73,153],"transition":[75,115],"from":[76,116],"technology":[77,117],"development":[78,103],"lab":[79],"floor.":[82],"Analysis":[83],"NGS":[85,133,142],"data,":[86],"too,":[87],"remains":[88],"challenging,":[89],"particularly":[90],"given":[91],"short-read":[93],"lengths":[94],"(35-250":[95],"bp)":[96],"sheer":[98],"volume":[99],"data.":[101],"The":[102],"streamlined,":[105],"highly":[106],"automated":[107],"pipelines":[108],"for":[109,114],"data":[110],"analysis":[111],"is":[112],"critical":[113],"adoption":[118],"accelerated":[120],"publication.":[123],"This":[124],"review":[125],"aims":[126],"describe":[128],"state":[130],"current":[132],"technologies,":[134],"as":[135,137],"well":[136],"strategies":[139],"that":[140],"enable":[141],"users":[143],"characterize":[145],"full":[147],"spectrum":[148],"DNA":[150],"sequence":[151],"variation":[152],"humans.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":24}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
