{"id":"https://openalex.org/W2137575744","doi":"https://doi.org/10.1093/bib/bbp056","title":"BioModels.net Web Services, a free and integrated toolkit for computational modelling software","display_name":"BioModels.net Web Services, a free and integrated toolkit for computational modelling software","publication_year":2009,"publication_date":"2009-11-25","ids":{"openalex":"https://openalex.org/W2137575744","doi":"https://doi.org/10.1093/bib/bbp056","mag":"2137575744","pmid":"https://pubmed.ncbi.nlm.nih.gov/19939940"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp056","pdf_url":"https://academic.oup.com/bib/article-pdf/11/3/270/604564/bbp056.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/11/3/270/604564/bbp056.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100369793","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-0079-3106"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C. Li","raw_affiliation_strings":["Computational Neurobiology Group, at the European Bioinformatics Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neurobiology Group, at the European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008255694","display_name":"M\u00e9lanie Courtot","orcid":"https://orcid.org/0000-0002-9551-6370"},"institutions":[{"id":"https://openalex.org/I2802971700","display_name":"Family Research Institute","ror":"https://ror.org/0173mx324","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802971700"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Courtot","raw_affiliation_strings":["M\u00e9lanie Courtot developed SBO and the associated Web Services while working in the Computational Neurobiology Group at the European Bioinformatics Institute. She is now pursuing a PhD at the Terry Fox Laboratory, BCCRC, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"M\u00e9lanie Courtot developed SBO and the associated Web Services while working in the Computational Neurobiology Group at the European Bioinformatics Institute. She is now pursuing a PhD at the Terry Fox Laboratory, BCCRC, Vancouver, Canada","institution_ids":["https://openalex.org/I2802971700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112438594","display_name":"Nicolas Le Nov\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"N. Le Novere","raw_affiliation_strings":["Nicolas Le Nov\u00e8re is leading the Computational Neurobiology Group at the European Bioinformatics Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nicolas Le Nov\u00e8re is leading the Computational Neurobiology Group at the European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062892160","display_name":"Camille Laibe","orcid":"https://orcid.org/0000-0002-4625-743X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Laibe","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.2952,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.88316068,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"3","first_page":"270","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.840065062046051},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6300251483917236},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5903876423835754},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5333132147789001},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5215796828269958},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5170698761940002},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.5060693621635437},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.46145379543304443},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4545440375804901},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.42143023014068604},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4100803732872009},{"id":"https://openalex.org/keywords/web-modeling","display_name":"Web modeling","score":0.4100259244441986},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3943244218826294},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.379287451505661},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1469748318195343},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1306457817554474},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10433483123779297}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.840065062046051},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6300251483917236},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5903876423835754},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5333132147789001},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5215796828269958},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5170698761940002},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.5060693621635437},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.46145379543304443},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4545440375804901},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.42143023014068604},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4100803732872009},{"id":"https://openalex.org/C130436687","wikidata":"https://www.wikidata.org/wiki/Q7978591","display_name":"Web modeling","level":3,"score":0.4100259244441986},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3943244218826294},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.379287451505661},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1469748318195343},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1306457817554474},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10433483123779297},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbp056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp056","pdf_url":"https://academic.oup.com/bib/article-pdf/11/3/270/604564/bbp056.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19939940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19939940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2913671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2913671","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp056","pdf_url":"https://academic.oup.com/bib/article-pdf/11/3/270/604564/bbp056.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1151114328","display_name":"BioModels Database: a Unified resource for Systems Biology models","funder_award_id":"BB/F010516/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G274352253","display_name":null,"funder_award_id":"GM070923-02","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5248349083","display_name":"Software infrastructure to support the standard of model curation and annotation MIRIAM","funder_award_id":"BB/E006248/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G621407478","display_name":null,"funder_award_id":"BB/E005748/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6386387721","display_name":null,"funder_award_id":"BB/E006248/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G730969003","display_name":null,"funder_award_id":"BB/F010516/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137575744.pdf","grobid_xml":"https://content.openalex.org/works/W2137575744.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1577231857","https://openalex.org/W2001758733","https://openalex.org/W2020561965","https://openalex.org/W2042880070","https://openalex.org/W2107062718","https://openalex.org/W2118279186","https://openalex.org/W2132817950","https://openalex.org/W2135290856","https://openalex.org/W2150908245","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W1492751213","https://openalex.org/W3136060338","https://openalex.org/W2064213895","https://openalex.org/W3139770152","https://openalex.org/W2149623444","https://openalex.org/W2349200978","https://openalex.org/W1501569591","https://openalex.org/W2150333190","https://openalex.org/W187706589","https://openalex.org/W2083496135"],"abstract_inverted_index":{"Exchanging":[0],"and":[1,37,61,83,103,106,120,158,190,229,252],"sharing":[2],"scientific":[3],"results":[4],"are":[5,194,206],"essential":[6],"for":[7,19,58,64,100,224],"researchers":[8,226],"in":[9,29,43,87,196,208,244,250],"the":[10,30,35,126,137,142,168,171,191,212,225,231],"field":[11],"of":[12,32,40,54,132,214,233],"computational":[13,108],"modelling.":[14],"BioModels.net":[15,69,127,217],"defines":[16,82],"agreed-upon":[17],"standards":[18],"model":[20,157],"curation.":[21],"A":[22,144],"fundamental":[23],"one,":[24],"MIRIAM":[25,49,162],"(Minimum":[26],"Information":[27],"Requested":[28],"Annotation":[31],"Models),":[33],"standardises":[34],"annotation":[36],"curation":[38],"process":[39],"quantitative":[41],"models":[42,243],"biology.":[44],"To":[45],"support":[46],"this":[47],"standard,":[48],"Resources":[50],"maintains":[51],"a":[52,94,113,130,156,197,234],"set":[53,131],"standard":[55],"data":[56],"types":[57],"annotating":[59],"models,":[60],"provides":[62,93,112,129],"services":[63,177],"manipulating":[65],"these":[66],"annotations.":[67],"Furthermore,":[68],"creates":[70],"controlled":[71],"vocabularies,":[72],"such":[73,153],"as":[74,154,164,166],"SBO":[75,173],"(Systems":[76],"Biology":[77],"Ontology)":[78],"which":[79,135],"strictly":[80],"indexes,":[81],"links":[84],"terms":[85],"used":[86],"Systems":[88],"Biology.":[89],"Finally,":[90],"BioModels":[91],"Database":[92],"free,":[95],"centralised,":[96],"publicly":[97],"accessible":[98],"database":[99],"storing,":[101],"searching":[102],"retrieving":[104,155],"curated":[105],"annotated":[107],"models.":[109,255],"Each":[110],"resource":[111],"web":[114,176],"interface":[115],"to":[116,139,149,210,227,240],"submit,":[117],"search,":[118],"retrieve":[119,241],"display":[121],"its":[122,161],"data.":[123],"In":[124],"addition,":[125],"team":[128],"Web":[133,218],"Services":[134,200,219],"allows":[136],"community":[138],"programmatically":[140],"access":[141],"resources.":[143],"user":[145],"is":[146],"then":[147],"able":[148],"perform":[150],"remote":[151],"queries,":[152],"resolving":[159],"all":[160],"Annotations,":[163],"well":[165],"getting":[167],"details":[169],"about":[170],"associated":[172],"terms.":[174],"These":[175],"use":[178],"established":[179],"standards.":[180],"Communications":[181],"rely":[182],"on":[183],"SOAP":[184],"(Simple":[185],"Object":[186],"Access":[187],"Protocol)":[188],"messages":[189],"available":[192],"queries":[193,249],"described":[195],"WSDL":[198],"(Web":[199],"Description":[201],"Language)":[202],"file.":[203],"Several":[204],"libraries":[205],"provided":[207],"order":[209],"simplify":[211],"development":[213],"client":[215],"software.":[216],"make":[220],"one":[221],"step":[222],"further":[223],"simulate":[228],"understand":[230],"entirety":[232],"biological":[235,242],"system,":[236],"by":[237],"allowing":[238],"them":[239],"their":[245],"own":[246],"tool,":[247],"combine":[248],"workflows":[251],"efficiently":[253],"analyse":[254]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
