{"id":"https://openalex.org/W2121498292","doi":"https://doi.org/10.1093/bib/bbp036","title":"Bioinformatics in the orphan crops","display_name":"Bioinformatics in the orphan crops","publication_year":2009,"publication_date":"2009-09-04","ids":{"openalex":"https://openalex.org/W2121498292","doi":"https://doi.org/10.1093/bib/bbp036","mag":"2121498292","pmid":"https://pubmed.ncbi.nlm.nih.gov/19734255"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp036","pdf_url":"https://academic.oup.com/bib/article-pdf/10/6/645/721863/bbp036.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/6/645/721863/bbp036.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060569955","display_name":"Ian Armstead","orcid":"https://orcid.org/0000-0002-1848-5101"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. Armstead","raw_affiliation_strings":["Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion SY23 3EB, Wales, UK","Institute of Biological, Environmental and Rural Sciences Aberystwyth University Plas Gogerddan Aberystwyth, Ceredigion SY23 3EB Wales UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion SY23 3EB, Wales, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences Aberystwyth University Plas Gogerddan Aberystwyth, Ceredigion SY23 3EB Wales UK","institution_ids":["https://openalex.org/I16038530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005592260","display_name":"Lin Huang","orcid":"https://orcid.org/0000-0002-4429-5539"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Huang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109199173","display_name":"Adriana Ravagnani","orcid":"https://orcid.org/0000-0002-2984-6355"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Ravagnani","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018462165","display_name":"P. R. H. Robson","orcid":"https://orcid.org/0000-0003-1841-3594"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Robson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5073409389","display_name":"Helen Ougham","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"H. Ougham","raw_affiliation_strings":["Helen Ougham is a plant physiologist, geneticist and bioinformaticist working on grass, cereal and other non-model species at IBERS. The five authors are plant geneticists and bioinformaticists working on non-model crop species in the Institute of Biological, Environmental and Rural Sciences, Aberystwyth University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helen Ougham is a plant physiologist, geneticist and bioinformaticist working on grass, cereal and other non-model species at IBERS. The five authors are plant geneticists and bioinformaticists working on non-model crop species in the Institute of Biological, Environmental and Rural Sciences, Aberystwyth University","institution_ids":["https://openalex.org/I4210118410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.9599,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.87258033,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"6","first_page":"645","last_page":"653"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12003","display_name":"Bioenergy crop production and management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12003","display_name":"Bioenergy crop production and management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13246","display_name":"Agriculture, Plant Science, Crop Management","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/miscanthus","display_name":"Miscanthus","score":0.8348302245140076},{"id":"https://openalex.org/keywords/crop","display_name":"Crop","score":0.671636700630188},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.5946744680404663},{"id":"https://openalex.org/keywords/forage","display_name":"Forage","score":0.5895730257034302},{"id":"https://openalex.org/keywords/agriculture","display_name":"Agriculture","score":0.5653327107429504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.546986997127533},{"id":"https://openalex.org/keywords/festuca","display_name":"Festuca","score":0.5209680795669556},{"id":"https://openalex.org/keywords/lolium","display_name":"Lolium","score":0.42864537239074707},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.39506375789642334},{"id":"https://openalex.org/keywords/agronomy","display_name":"Agronomy","score":0.365617036819458},{"id":"https://openalex.org/keywords/agroforestry","display_name":"Agroforestry","score":0.3596426248550415},{"id":"https://openalex.org/keywords/biofuel","display_name":"Biofuel","score":0.17164552211761475},{"id":"https://openalex.org/keywords/poaceae","display_name":"Poaceae","score":0.1666921079158783},{"id":"https://openalex.org/keywords/bioenergy","display_name":"Bioenergy","score":0.15514281392097473},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.09036698937416077}],"concepts":[{"id":"https://openalex.org/C2779012619","wikidata":"https://www.wikidata.org/wiki/Q131542","display_name":"Miscanthus","level":4,"score":0.8348302245140076},{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.671636700630188},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.5946744680404663},{"id":"https://openalex.org/C2779370140","wikidata":"https://www.wikidata.org/wiki/Q13377214","display_name":"Forage","level":2,"score":0.5895730257034302},{"id":"https://openalex.org/C118518473","wikidata":"https://www.wikidata.org/wiki/Q11451","display_name":"Agriculture","level":2,"score":0.5653327107429504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.546986997127533},{"id":"https://openalex.org/C2777601862","wikidata":"https://www.wikidata.org/wiki/Q157337","display_name":"Festuca","level":3,"score":0.5209680795669556},{"id":"https://openalex.org/C2778659099","wikidata":"https://www.wikidata.org/wiki/Q158509","display_name":"Lolium","level":3,"score":0.42864537239074707},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.39506375789642334},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.365617036819458},{"id":"https://openalex.org/C54286561","wikidata":"https://www.wikidata.org/wiki/Q397350","display_name":"Agroforestry","level":1,"score":0.3596426248550415},{"id":"https://openalex.org/C53991642","wikidata":"https://www.wikidata.org/wiki/Q128991","display_name":"Biofuel","level":2,"score":0.17164552211761475},{"id":"https://openalex.org/C46757340","wikidata":"https://www.wikidata.org/wiki/Q43238","display_name":"Poaceae","level":2,"score":0.1666921079158783},{"id":"https://openalex.org/C156380964","wikidata":"https://www.wikidata.org/wiki/Q18556","display_name":"Bioenergy","level":3,"score":0.15514281392097473},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09036698937416077}],"mesh":[{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbp036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp036","pdf_url":"https://academic.oup.com/bib/article-pdf/10/6/645/721863/bbp036.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19734255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19734255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbp036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp036","pdf_url":"https://academic.oup.com/bib/article-pdf/10/6/645/721863/bbp036.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1035013570","display_name":null,"funder_award_id":"BBS/E/W/00003134A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6483009062","display_name":"Molecular Genetics of Miscanthus","funder_award_id":"BBS/E/W/00003134A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1521030777","https://openalex.org/W1536676980","https://openalex.org/W1541016577","https://openalex.org/W1559906986","https://openalex.org/W1801185880","https://openalex.org/W1963650420","https://openalex.org/W1970687527","https://openalex.org/W1970929337","https://openalex.org/W1987680408","https://openalex.org/W1990428577","https://openalex.org/W1997711934","https://openalex.org/W2005168458","https://openalex.org/W2006229971","https://openalex.org/W2008669252","https://openalex.org/W2010907379","https://openalex.org/W2015791321","https://openalex.org/W2024519842","https://openalex.org/W2027366715","https://openalex.org/W2028653511","https://openalex.org/W2030466806","https://openalex.org/W2030623036","https://openalex.org/W2039514736","https://openalex.org/W2049367790","https://openalex.org/W2054710446","https://openalex.org/W2063270533","https://openalex.org/W2070387787","https://openalex.org/W2074074960","https://openalex.org/W2074517217","https://openalex.org/W2077101899","https://openalex.org/W2096147850","https://openalex.org/W2100750361","https://openalex.org/W2109141600","https://openalex.org/W2110030512","https://openalex.org/W2116707768","https://openalex.org/W2117743239","https://openalex.org/W2118939434","https://openalex.org/W2119530273","https://openalex.org/W2125346198","https://openalex.org/W2132989289","https://openalex.org/W2139068863","https://openalex.org/W2142860007","https://openalex.org/W2145477956","https://openalex.org/W2147772098","https://openalex.org/W2168967550","https://openalex.org/W2169180160","https://openalex.org/W2172226503","https://openalex.org/W2649565097"],"related_works":["https://openalex.org/W2095120038","https://openalex.org/W2296027479","https://openalex.org/W1972944353","https://openalex.org/W1568113260","https://openalex.org/W2011280150","https://openalex.org/W2335716048","https://openalex.org/W1917777292","https://openalex.org/W2020394397","https://openalex.org/W4251467270","https://openalex.org/W2330429253"],"abstract_inverted_index":{"Orphan":[0],"crops":[1,13],"are":[2,5],"those":[3],"which":[4,20],"grown":[6],"as":[7],"food,":[8],"animal":[9],"feed":[10],"or":[11,30],"other":[12],"of":[14,27],"some":[15,71],"importance":[16],"in":[17,78],"agriculture,":[18],"but":[19],"have":[21],"not":[22,58],"yet":[23],"received":[24],"the":[25,79,88,96],"investment":[26],"research":[28,64],"effort":[29],"funding":[31],"required":[32],"to":[33,45,62],"develop":[34],"significant":[35],"public":[36],"bioinformatics":[37,54,77],"resources.":[38],"Where":[39],"an":[40],"orphan":[41,80],"crop":[42,66,100],"is":[43],"related":[44],"a":[46],"well-characterised":[47],"model":[48],"plant":[49],"species,":[50],"comparative":[51],"genomics":[52],"and":[53,65,73,91,95],"can":[55],"often,":[56],"though":[57],"always,":[59],"be":[60],"exploited":[61],"assist":[63],"improvement.":[67],"This":[68],"review":[69],"addresses":[70],"challenges":[72],"opportunities":[74],"presented":[75],"by":[76],"crops,":[81],"using":[82],"three":[83],"examples:":[84],"forage":[85,93],"grasses":[86],"from":[87],"genera":[89],"Lolium":[90],"Festuca,":[92],"legumes":[94],"second":[97],"generation":[98],"energy":[99],"Miscanthus.":[101]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
