{"id":"https://openalex.org/W2151990594","doi":"https://doi.org/10.1093/bib/bbp034","title":"Stability and aggregation of ranked gene lists","display_name":"Stability and aggregation of ranked gene lists","publication_year":2009,"publication_date":"2009-08-07","ids":{"openalex":"https://openalex.org/W2151990594","doi":"https://doi.org/10.1093/bib/bbp034","mag":"2151990594","pmid":"https://pubmed.ncbi.nlm.nih.gov/19679825"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp034","pdf_url":"https://academic.oup.com/bib/article-pdf/10/5/556/567814/bbp034.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/5/556/567814/bbp034.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015152016","display_name":"Anne\u2010Laure Boulesteix","orcid":"https://orcid.org/0000-0002-2729-0947"},"institutions":[{"id":"https://openalex.org/I169724904","display_name":"Zimmer Biomet (Netherlands)","ror":"https://ror.org/034k8cv93","country_code":"NL","type":"company","lineage":["https://openalex.org/I169724904","https://openalex.org/I4210115238"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"A.-L. Boulesteix","raw_affiliation_strings":["Department of Medical Informatics, Biometry and Epidemiology (IBE), Marchioninistr. 15, 81377 Munich, Germany. boulesteix@ibe.med.uni-muenchen.de","Department of Medical Informatics, Biometry and Epidemiology (IBE), Marchioninistr. 15, 81377 Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Biometry and Epidemiology (IBE), Marchioninistr. 15, 81377 Munich, Germany. boulesteix@ibe.med.uni-muenchen.de","institution_ids":["https://openalex.org/I169724904"]},{"raw_affiliation_string":"Department of Medical Informatics, Biometry and Epidemiology (IBE), Marchioninistr. 15, 81377 Munich, Germany","institution_ids":["https://openalex.org/I169724904"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055010301","display_name":"Martin Slawski","orcid":"https://orcid.org/0000-0003-0054-4764"},"institutions":[{"id":"https://openalex.org/I4210091280","display_name":"Sine Institute","ror":"https://ror.org/019b9yp12","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210091280"]},{"id":"https://openalex.org/I4210120512","display_name":"Hochschule f\u00fcr Technik und Wirtschaft des Saarlandes","ror":"https://ror.org/02ge27m07","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210120512"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Slawski","raw_affiliation_strings":["Martin Slawski obtained his diploma in statistics in 2008 from the University of Munich, Germany. During his studies of statistics, he worked on various projects on high-dimensional data analysis. He is now a PhD student in the Machine Learning Group at the Department of Computer Science of the Saarland University, Saarbr\u00fccken, Germany","Faculty of Medicine of the University of Munich, Germany since 2009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Martin Slawski obtained his diploma in statistics in 2008 from the University of Munich, Germany. During his studies of statistics, he worked on various projects on high-dimensional data analysis. He is now a PhD student in the Machine Learning Group at the Department of Computer Science of the Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210120512"]},{"raw_affiliation_string":"Faculty of Medicine of the University of Munich, Germany since 2009","institution_ids":["https://openalex.org/I4210091280"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":6.6767,"has_fulltext":true,"cited_by_count":196,"citation_normalized_percentile":{"value":0.97735015,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"5","first_page":"556","last_page":"568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6618039608001709},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.6102651953697205},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6060324311256409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.522255003452301},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4361986517906189},{"id":"https://openalex.org/keywords/skepticism","display_name":"Skepticism","score":0.43481916189193726},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3792290985584259},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3590693473815918},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3357943892478943},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33409300446510315},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24317282438278198},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16332978010177612},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.14015015959739685},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.06315463781356812}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6618039608001709},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.6102651953697205},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6060324311256409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.522255003452301},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4361986517906189},{"id":"https://openalex.org/C18296254","wikidata":"https://www.wikidata.org/wiki/Q1395219","display_name":"Skepticism","level":2,"score":0.43481916189193726},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3792290985584259},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3590693473815918},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3357943892478943},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33409300446510315},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24317282438278198},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16332978010177612},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.14015015959739685},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.06315463781356812},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp034","pdf_url":"https://academic.oup.com/bib/article-pdf/10/5/556/567814/bbp034.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19679825","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19679825","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:epub.ub.uni-muenchen.de:10611","is_oa":false,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bvb:19-epub-10611-7","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics","raw_type":"doc-type:workingPaper"},{"id":"doi:10.5282/ubm/epub.10611","is_oa":true,"landing_page_url":"https://doi.org/10.5282/ubm/epub.10611","pdf_url":null,"source":{"id":"https://openalex.org/S7407052039","display_name":"Universit\u00e4tsbibliothek der LMU","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp034","pdf_url":"https://academic.oup.com/bib/article-pdf/10/5/556/567814/bbp034.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320319618","display_name":"Porticus Foundation","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151990594.pdf","grobid_xml":"https://content.openalex.org/works/W2151990594.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1496421042","https://openalex.org/W1497071712","https://openalex.org/W1528493411","https://openalex.org/W1875061881","https://openalex.org/W1965138864","https://openalex.org/W1966703382","https://openalex.org/W1979678061","https://openalex.org/W1981093360","https://openalex.org/W2021129827","https://openalex.org/W2026667439","https://openalex.org/W2027800464","https://openalex.org/W2039365544","https://openalex.org/W2047729457","https://openalex.org/W2049131636","https://openalex.org/W2068517117","https://openalex.org/W2074089196","https://openalex.org/W2076889248","https://openalex.org/W2081098333","https://openalex.org/W2083675953","https://openalex.org/W2083993550","https://openalex.org/W2096484007","https://openalex.org/W2097554668","https://openalex.org/W2097879961","https://openalex.org/W2100952064","https://openalex.org/W2105793531","https://openalex.org/W2107598685","https://openalex.org/W2109555487","https://openalex.org/W2112134481","https://openalex.org/W2113685289","https://openalex.org/W2115684345","https://openalex.org/W2116343100","https://openalex.org/W2116821545","https://openalex.org/W2118190787","https://openalex.org/W2118789532","https://openalex.org/W2121824548","https://openalex.org/W2126124351","https://openalex.org/W2141009231","https://openalex.org/W2142880323","https://openalex.org/W2144227498","https://openalex.org/W2144981148","https://openalex.org/W2147278423","https://openalex.org/W2147700150","https://openalex.org/W2148139839","https://openalex.org/W2151566419","https://openalex.org/W2151802396","https://openalex.org/W2153718589","https://openalex.org/W2157132621","https://openalex.org/W2157795344","https://openalex.org/W2160232885","https://openalex.org/W2164584440","https://openalex.org/W2165374837","https://openalex.org/W2168914100","https://openalex.org/W2169006190","https://openalex.org/W2169352946","https://openalex.org/W2170522882","https://openalex.org/W2172215633","https://openalex.org/W2243629635","https://openalex.org/W3037286686","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W4223449272","https://openalex.org/W2978247079","https://openalex.org/W2166887457","https://openalex.org/W2148708580","https://openalex.org/W3037604406","https://openalex.org/W2140163842","https://openalex.org/W2982252354"],"abstract_inverted_index":{"Ranked":[0],"gene":[1,14,34,91],"lists":[2,92],"are":[3],"highly":[4],"instable":[5],"in":[6,43,54],"the":[7,27,32,44,55,64,68,85,94,125],"sense":[8],"that":[9,22],"similar":[10],"measures":[11],"of":[12,26,63,73,87,89,97,108],"differential":[13],"expression":[15],"may":[16],"yield":[17],"very":[18],"different":[19],"rankings,":[20],"and":[21,70,93,103],"a":[23,51,61,119],"small":[24],"change":[25],"data":[28,122],"set":[29,123],"usually":[30],"affects":[31],"obtained":[33],"list":[35],"considerably.":[36],"Stability":[37],"issues":[38],"have":[39,48],"long":[40],"been":[41],"under-considered":[42],"literature,":[45],"but":[46],"they":[47],"grown":[49],"to":[50,118],"hot":[52],"topic":[53],"last":[56],"few":[57],"years,":[58],"perhaps":[59],"as":[60],"consequence":[62],"increasing":[65],"skepticism":[66],"on":[67],"reproducibility":[69],"clinical":[71],"applicability":[72],"molecular":[74],"research":[75],"findings.":[76],"In":[77],"this":[78],"article,":[79],"we":[80],"review":[81],"existing":[82],"approaches":[83],"for":[84],"assessment":[86],"stability":[88],"ranked":[90],"related":[95],"problem":[96],"aggregation,":[98],"give":[99],"some":[100],"practical":[101],"recommendations,":[102],"warn":[104],"against":[105],"potential":[106],"misuse":[107],"these":[109],"methods.":[110],"This":[111],"overview":[112],"is":[113],"illustrated":[114],"through":[115],"an":[116],"application":[117],"recent":[120],"leukemia":[121],"using":[124],"freely":[126],"available":[127],"Bioconductor":[128],"package":[129],"GeneSelector.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":21},{"year":2012,"cited_by_count":22}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
