{"id":"https://openalex.org/W1981485066","doi":"https://doi.org/10.1093/bib/bbp029","title":"Approaches to neuroscience data integration","display_name":"Approaches to neuroscience data integration","publication_year":2009,"publication_date":"2009-06-07","ids":{"openalex":"https://openalex.org/W1981485066","doi":"https://doi.org/10.1093/bib/bbp029","mag":"1981485066","pmid":"https://pubmed.ncbi.nlm.nih.gov/19505888"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp029","pdf_url":"https://academic.oup.com/bib/article-pdf/10/4/345/851213/bbp029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/4/345/851213/bbp029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068543420","display_name":"Kei-Hoi Cheung","orcid":"https://orcid.org/0000-0001-6432-9372"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.-H. Cheung","raw_affiliation_strings":["Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA. kei.cheung@yale.edu","Center for Medical Informatics, Yale University School of Medicine, New Haven, CT, 06511, USA"],"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA. kei.cheung@yale.edu","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Center for Medical Informatics, Yale University School of Medicine, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002828539","display_name":"Ee Jean Lim","orcid":"https://orcid.org/0000-0002-5242-0651"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. Lim","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082184364","display_name":"Matthias Samwald","orcid":"https://orcid.org/0000-0002-4855-2571"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Samwald","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008473103","display_name":"Hongyang Chen","orcid":"https://orcid.org/0000-0002-7626-0162"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Chen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072064820","display_name":"Luis Marenco","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Marenco","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038730595","display_name":"Matthew Holford","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. E. Holford","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088914228","display_name":"Thomas M. Morse","orcid":"https://orcid.org/0000-0002-2902-8272"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. M. Morse","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061242555","display_name":"Pradeep Mutalik","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Mutalik","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108540902","display_name":"G. Shepherd","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G. M. Shepherd","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5022632017","display_name":"Phil Miller","orcid":"https://orcid.org/0000-0001-5772-3654"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. L. Miller","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5068543420"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.9436,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.73226072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"4","first_page":"345","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7075003981590271},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.6937933564186096},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5667017698287964},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5114568471908569},{"id":"https://openalex.org/keywords/computational-neuroscience","display_name":"Computational neuroscience","score":0.44573450088500977},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.42224591970443726},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.40963035821914673},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3612619936466217},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32635676860809326},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28784796595573425},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22944721579551697},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21907031536102295},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1501571536064148}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7075003981590271},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.6937933564186096},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5667017698287964},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5114568471908569},{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.44573450088500977},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.42224591970443726},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.40963035821914673},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3612619936466217},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32635676860809326},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28784796595573425},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22944721579551697},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21907031536102295},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1501571536064148}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbp029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp029","pdf_url":"https://academic.oup.com/bib/article-pdf/10/4/345/851213/bbp029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19505888","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19505888","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:http://www.rian.ie/161222/","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/10767","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2691938","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2691938","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp029","pdf_url":"https://academic.oup.com/bib/article-pdf/10/4/345/851213/bbp029.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307904","display_name":"Oracle","ror":"https://ror.org/006c77m33"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1981485066.pdf","grobid_xml":"https://content.openalex.org/works/W1981485066.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1840032143","https://openalex.org/W1974519458","https://openalex.org/W2004884668","https://openalex.org/W2033377040","https://openalex.org/W2047784262","https://openalex.org/W2052522161","https://openalex.org/W2076327529","https://openalex.org/W2077509789","https://openalex.org/W2108177663","https://openalex.org/W2113142309","https://openalex.org/W2121588207","https://openalex.org/W2145258036","https://openalex.org/W2147571311","https://openalex.org/W2163485494","https://openalex.org/W2409569635","https://openalex.org/W2416576459"],"related_works":["https://openalex.org/W4390782210","https://openalex.org/W4385769909","https://openalex.org/W2898484142","https://openalex.org/W1991647999","https://openalex.org/W2506406097","https://openalex.org/W2054414398","https://openalex.org/W2162859332","https://openalex.org/W2323291038","https://openalex.org/W2028754780","https://openalex.org/W2066413801"],"abstract_inverted_index":{"As":[0],"the":[1,7,22,115,118],"number":[2],"of":[3,46,54,58,106,117],"neuroscience":[4,10,36,59],"databases":[5],"increases,":[6],"need":[8],"for":[9,68,78,102],"data":[11,60],"integration":[12,53],"grows.":[13],"This":[14],"paper":[15],"reviews":[16],"and":[17,31,39,52,71,90],"compares":[18],"several":[19],"approaches,":[20],"including":[21],"Neuroscience":[23,27],"Database":[24],"Gateway":[25],"(NDG),":[26],"Information":[28],"Framework":[29],"(NIF)":[30],"Entrez":[32,76],"Neuron,":[33,77],"which":[34],"enable":[35],"database":[37],"annotation":[38],"integration.":[40],"These":[41],"approaches":[42],"cover":[43],"a":[44,55,104],"range":[45],"activities":[47],"spanning":[48],"from":[49],"registry,":[50],"discovery":[51],"wide":[56],"variety":[57],"sources.":[61],"They":[62],"also":[63,111],"provide":[64],"different":[65,81],"user":[66],"interfaces":[67],"browsing,":[69],"querying":[70,103],"displaying":[72],"query":[73,119],"results.":[74,120],"In":[75],"example,":[79],"four":[80],"facets":[82,109],"or":[83],"tree":[84],"views":[85],"(neuron,":[86],"neuronal":[87],"property,":[88],"gene":[89],"drug)":[91],"are":[92,110],"used":[93,101,112],"to":[94,113],"hierarchically":[95],"organize":[96],"concepts":[97],"that":[98],"can":[99],"be":[100],"collection":[105],"ontologies.":[107],"The":[108],"define":[114],"structure":[116]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
