{"id":"https://openalex.org/W2112937261","doi":"https://doi.org/10.1093/bib/bbp023","title":"Recent advances in computer-aided drug design","display_name":"Recent advances in computer-aided drug design","publication_year":2009,"publication_date":"2009-05-11","ids":{"openalex":"https://openalex.org/W2112937261","doi":"https://doi.org/10.1093/bib/bbp023","mag":"2112937261","pmid":"https://pubmed.ncbi.nlm.nih.gov/19433475"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp023","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbp023","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082959687","display_name":"Chao Song","orcid":"https://orcid.org/0000-0002-8981-2296"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"C. M. Song","raw_affiliation_strings":["Institute for Infocomm Research, Connexis South Tower, Singapore 138632"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, Connexis South Tower, Singapore 138632","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054108248","display_name":"Shen Jean Lim","orcid":"https://orcid.org/0000-0003-4578-5318"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S. J. Lim","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5108222100","display_name":"J. Tong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. C. Tong","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082959687"],"corresponding_institution_ids":["https://openalex.org/I3005327000"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":10.3636,"has_fulltext":false,"cited_by_count":336,"citation_normalized_percentile":{"value":0.98724175,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"10","issue":"5","first_page":"579","last_page":"591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7862552404403687},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.781126856803894},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7634091377258301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7331450581550598},{"id":"https://openalex.org/keywords/computer-aided","display_name":"Computer-aided","score":0.5849504470825195},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5078304409980774},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4307234287261963},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3548702895641327},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21061262488365173},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16983965039253235},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.15007591247558594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09340515732765198}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7862552404403687},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.781126856803894},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7634091377258301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7331450581550598},{"id":"https://openalex.org/C2780727963","wikidata":"https://www.wikidata.org/wiki/Q5157368","display_name":"Computer-aided","level":2,"score":0.5849504470825195},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5078304409980774},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4307234287261963},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3548702895641327},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21061262488365173},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16983965039253235},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.15007591247558594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09340515732765198},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013678","descriptor_name":"Technology, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013678","descriptor_name":"Technology, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013678","descriptor_name":"Technology, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbp023","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbp023","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19433475","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19433475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/28771","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/28771","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Review"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":161,"referenced_works":["https://openalex.org/W5642939","https://openalex.org/W26940188","https://openalex.org/W125577685","https://openalex.org/W180401638","https://openalex.org/W230577504","https://openalex.org/W964503500","https://openalex.org/W1489601464","https://openalex.org/W1546236098","https://openalex.org/W1557618397","https://openalex.org/W1574994167","https://openalex.org/W1592950931","https://openalex.org/W1605923270","https://openalex.org/W1656114533","https://openalex.org/W1737733244","https://openalex.org/W1965617737","https://openalex.org/W1965682520","https://openalex.org/W1966679395","https://openalex.org/W1967026937","https://openalex.org/W1967964561","https://openalex.org/W1969729475","https://openalex.org/W1970197953","https://openalex.org/W1970202530","https://openalex.org/W1972935024","https://openalex.org/W1974483352","https://openalex.org/W1975017420","https://openalex.org/W1975147762","https://openalex.org/W1975293246","https://openalex.org/W1979177054","https://openalex.org/W1979853788","https://openalex.org/W1981076832","https://openalex.org/W1984017257","https://openalex.org/W1985481261","https://openalex.org/W1986191025","https://openalex.org/W1986240377","https://openalex.org/W1988476709","https://openalex.org/W1996100382","https://openalex.org/W2002139280","https://openalex.org/W2003356525","https://openalex.org/W2003873735","https://openalex.org/W2007183720","https://openalex.org/W2007436490","https://openalex.org/W2009000921","https://openalex.org/W2009064762","https://openalex.org/W2011495938","https://openalex.org/W2011570309","https://openalex.org/W2012704983","https://openalex.org/W2014989916","https://openalex.org/W2015461838","https://openalex.org/W2017132056","https://openalex.org/W2017254234","https://openalex.org/W2018053002","https://openalex.org/W2019293486","https://openalex.org/W2020724527","https://openalex.org/W2021177388","https://openalex.org/W2021284440","https://openalex.org/W2022762253","https://openalex.org/W2022864303","https://openalex.org/W2023344184","https://openalex.org/W2027638447","https://openalex.org/W2031095666","https://openalex.org/W2031305384","https://openalex.org/W2032353075","https://openalex.org/W2033496784","https://openalex.org/W2037261712","https://openalex.org/W2043429268","https://openalex.org/W2044115597","https://openalex.org/W2045103836","https://openalex.org/W2047509756","https://openalex.org/W2047710091","https://openalex.org/W2048816080","https://openalex.org/W2049902088","https://openalex.org/W2049961577","https://openalex.org/W2051810242","https://openalex.org/W2051993924","https://openalex.org/W2052907531","https://openalex.org/W2054113335","https://openalex.org/W2055137136","https://openalex.org/W2055394288","https://openalex.org/W2060809301","https://openalex.org/W2061904114","https://openalex.org/W2065283382","https://openalex.org/W2069506489","https://openalex.org/W2071486470","https://openalex.org/W2075186867","https://openalex.org/W2076140424","https://openalex.org/W2077235131","https://openalex.org/W2078240823","https://openalex.org/W2080948893","https://openalex.org/W2083737836","https://openalex.org/W2083957993","https://openalex.org/W2084266282","https://openalex.org/W2084375915","https://openalex.org/W2084466582","https://openalex.org/W2085645854","https://openalex.org/W2086358466","https://openalex.org/W2088221622","https://openalex.org/W2088933990","https://openalex.org/W2089589794","https://openalex.org/W2089648056","https://openalex.org/W2091734240","https://openalex.org/W2096975829","https://openalex.org/W2097698606","https://openalex.org/W2099538400","https://openalex.org/W2105801262","https://openalex.org/W2107506448","https://openalex.org/W2108825946","https://openalex.org/W2109610280","https://openalex.org/W2110010969","https://openalex.org/W2110041134","https://openalex.org/W2111796195","https://openalex.org/W2111979569","https://openalex.org/W2112012991","https://openalex.org/W2113221321","https://openalex.org/W2114779636","https://openalex.org/W2118233996","https://openalex.org/W2121175754","https://openalex.org/W2127971628","https://openalex.org/W2129137060","https://openalex.org/W2130354820","https://openalex.org/W2131003320","https://openalex.org/W2131666270","https://openalex.org/W2132844342","https://openalex.org/W2134187096","https://openalex.org/W2134344823","https://openalex.org/W2137859534","https://openalex.org/W2142237411","https://openalex.org/W2143129697","https://openalex.org/W2143798637","https://openalex.org/W2147809382","https://openalex.org/W2148724859","https://openalex.org/W2149480059","https://openalex.org/W2150174781","https://openalex.org/W2152178770","https://openalex.org/W2152653671","https://openalex.org/W2153037537","https://openalex.org/W2155741020","https://openalex.org/W2156070536","https://openalex.org/W2158064860","https://openalex.org/W2158307923","https://openalex.org/W2158534713","https://openalex.org/W2158714788","https://openalex.org/W2161723120","https://openalex.org/W2162166182","https://openalex.org/W2163498131","https://openalex.org/W2164008320","https://openalex.org/W2166022874","https://openalex.org/W2168909179","https://openalex.org/W2170146596","https://openalex.org/W2171322586","https://openalex.org/W2176516200","https://openalex.org/W2177508090","https://openalex.org/W2212567822","https://openalex.org/W2324996872","https://openalex.org/W2411372316","https://openalex.org/W2471657045","https://openalex.org/W2916858871","https://openalex.org/W2951811035","https://openalex.org/W2952280638","https://openalex.org/W4230640326","https://openalex.org/W4246356731","https://openalex.org/W4250830547"],"related_works":["https://openalex.org/W3180887190","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W2320211095","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W4402273478","https://openalex.org/W2594726310","https://openalex.org/W2355193834","https://openalex.org/W2064425779"],"abstract_inverted_index":{"Modern":[0],"drug":[1,46],"discovery":[2,63,179],"is":[3,192],"characterized":[4],"by":[5],"the":[6,14,41,60,82,91,101,133,169,178,187],"production":[7],"of":[8,11,24,64,84,105,137,146,168,180,186],"vast":[9],"quantities":[10],"compounds":[12,107],"and":[13,31,53,62,75,103,120,128,159,174],"need":[15,27],"to":[16,28,40,58,93,150,198],"examine":[17],"these":[18,33],"huge":[19,147],"libraries":[20,149],"in":[21,97,134],"short":[22],"periods":[23],"time.":[25],"The":[26,184],"store,":[29],"manage":[30],"analyze":[32],"rapidly":[34],"increasing":[35],"resources":[36,54],"has":[37],"given":[38],"rise":[39],"field":[42],"known":[43],"as":[44],"computer-aided":[45],"design":[47,61],"(CADD).":[48],"CADD":[49],"represents":[50],"computational":[51,175],"methods":[52,176],"that":[55,155],"are":[56,79,122],"used":[57],"facilitate":[59],"new":[65,181],"therapeutic":[66],"solutions.":[67],"Digital":[68],"repositories,":[69],"containing":[70],"detailed":[71],"information":[72],"on":[73],"drugs":[74],"other":[76],"useful":[77],"compounds,":[78],"goldmines":[80],"for":[81,113,124,143,177],"study":[83],"chemical":[85,106,148],"reactions":[86],"capabilities.":[87],"Design":[88],"libraries,":[89],"with":[90,108],"potential":[92,152],"generate":[94],"molecular":[95,129,182],"variants":[96],"their":[98],"entirety,":[99],"allow":[100],"selection":[102],"sampling":[104],"diverse":[109],"characteristics.":[110],"Fold":[111],"recognition,":[112],"studying":[114],"sequence-structure":[115],"homology":[116],"between":[117],"protein":[118],"sequences":[119],"structures,":[121],"helpful":[123],"inferring":[125],"binding":[126],"sites":[127],"functions.":[130],"Virtual":[131],"screening,":[132,139],"silico":[135],"analog":[136],"high-throughput":[138],"offers":[140],"great":[141],"promise":[142],"systematic":[144],"evaluation":[145],"identify":[151],"lead":[153],"candidates":[154],"can":[156],"be":[157],"synthesized":[158],"tested.":[160],"In":[161],"this":[162],"article,":[163],"we":[164],"present":[165],"an":[166],"overview":[167],"most":[170],"important":[171],"data":[172,195],"sources":[173],"entities.":[183],"workflow":[185],"entire":[188],"virtual":[189],"screening":[190],"campaign":[191],"discussed,":[193],"from":[194],"collection":[196],"through":[197],"post-screening":[199],"analysis.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":39},{"year":2022,"cited_by_count":46},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
