{"id":"https://openalex.org/W2152521138","doi":"https://doi.org/10.1093/bib/bbp021","title":"Progress and challenges in predicting protein-protein interaction sites","display_name":"Progress and challenges in predicting protein-protein interaction sites","publication_year":2008,"publication_date":"2008-12-06","ids":{"openalex":"https://openalex.org/W2152521138","doi":"https://doi.org/10.1093/bib/bbp021","mag":"2152521138","pmid":"https://pubmed.ncbi.nlm.nih.gov/19346321"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp021","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbp021","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008691880","display_name":"Iakes Ezkurdia","orcid":"https://orcid.org/0000-0001-9074-5302"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"I. Ezkurdia","raw_affiliation_strings":["Centro Nacional de Biotechnolgia, Spanish National Cancer Research Centre (CNIO), Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro Nacional de Biotechnolgia, Spanish National Cancer Research Centre (CNIO), Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046517202","display_name":"Lisa Bartoli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Bartoli","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Fariselli","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. Casadio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Valencia","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5088945131","display_name":"Michael L. Tress","orcid":"https://orcid.org/0000-0001-9046-6370"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. L. Tress","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008691880"],"corresponding_institution_ids":["https://openalex.org/I4210089594"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.3764,"has_fulltext":false,"cited_by_count":173,"citation_normalized_percentile":{"value":0.96540721,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"3","first_page":"233","last_page":"246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7557723522186279},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.6099494099617004},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6038168668746948},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5337567925453186},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5115559697151184},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4941261112689972},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.473956823348999},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.46977394819259644},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45225855708122253},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.42956864833831787},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3538399934768677},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.345764696598053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1203356683254242}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7557723522186279},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.6099494099617004},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6038168668746948},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5337567925453186},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5115559697151184},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4941261112689972},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.473956823348999},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.46977394819259644},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45225855708122253},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.42956864833831787},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3538399934768677},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.345764696598053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1203356683254242},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbp021","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbp021","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19346321","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19346321","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/79351","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/79351","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/3184031","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3184031","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":122,"referenced_works":["https://openalex.org/W1483099488","https://openalex.org/W1526151739","https://openalex.org/W1584189892","https://openalex.org/W1926568554","https://openalex.org/W1958621998","https://openalex.org/W1965582988","https://openalex.org/W1967408543","https://openalex.org/W1969842170","https://openalex.org/W1973144212","https://openalex.org/W1974977468","https://openalex.org/W1975121208","https://openalex.org/W1977845138","https://openalex.org/W1985153601","https://openalex.org/W1989447327","https://openalex.org/W1994151152","https://openalex.org/W1995924392","https://openalex.org/W1996559970","https://openalex.org/W1997803213","https://openalex.org/W2000093524","https://openalex.org/W2000383223","https://openalex.org/W2000980755","https://openalex.org/W2007451197","https://openalex.org/W2008708467","https://openalex.org/W2013988051","https://openalex.org/W2014731953","https://openalex.org/W2014744153","https://openalex.org/W2018392691","https://openalex.org/W2023048070","https://openalex.org/W2023487073","https://openalex.org/W2025120281","https://openalex.org/W2026370952","https://openalex.org/W2027035874","https://openalex.org/W2027036222","https://openalex.org/W2027640169","https://openalex.org/W2029820720","https://openalex.org/W2030154259","https://openalex.org/W2031772330","https://openalex.org/W2033855745","https://openalex.org/W2034256925","https://openalex.org/W2037036397","https://openalex.org/W2038678667","https://openalex.org/W2040074453","https://openalex.org/W2041673942","https://openalex.org/W2043699100","https://openalex.org/W2046407284","https://openalex.org/W2047468595","https://openalex.org/W2051531023","https://openalex.org/W2054291744","https://openalex.org/W2055043387","https://openalex.org/W2056034415","https://openalex.org/W2056063299","https://openalex.org/W2056756773","https://openalex.org/W2057289558","https://openalex.org/W2057813163","https://openalex.org/W2057849368","https://openalex.org/W2058128997","https://openalex.org/W2059067075","https://openalex.org/W2062351773","https://openalex.org/W2065304353","https://openalex.org/W2067455153","https://openalex.org/W2071704671","https://openalex.org/W2075770210","https://openalex.org/W2078302553","https://openalex.org/W2084619201","https://openalex.org/W2084949662","https://openalex.org/W2089035513","https://openalex.org/W2092189515","https://openalex.org/W2096119514","https://openalex.org/W2097697746","https://openalex.org/W2098426148","https://openalex.org/W2098994369","https://openalex.org/W2099080664","https://openalex.org/W2099173559","https://openalex.org/W2099886875","https://openalex.org/W2101953406","https://openalex.org/W2103210604","https://openalex.org/W2103485392","https://openalex.org/W2104315543","https://openalex.org/W2104760790","https://openalex.org/W2105438341","https://openalex.org/W2107340752","https://openalex.org/W2108508060","https://openalex.org/W2109228802","https://openalex.org/W2109553965","https://openalex.org/W2111387452","https://openalex.org/W2113019448","https://openalex.org/W2113623846","https://openalex.org/W2115410056","https://openalex.org/W2116099439","https://openalex.org/W2121166097","https://openalex.org/W2124904677","https://openalex.org/W2124954099","https://openalex.org/W2126414848","https://openalex.org/W2126755078","https://openalex.org/W2130479394","https://openalex.org/W2131465715","https://openalex.org/W2132709044","https://openalex.org/W2133657255","https://openalex.org/W2134544170","https://openalex.org/W2136206140","https://openalex.org/W2136525667","https://openalex.org/W2136832587","https://openalex.org/W2137167381","https://openalex.org/W2138104170","https://openalex.org/W2141627824","https://openalex.org/W2143881057","https://openalex.org/W2148219066","https://openalex.org/W2148603752","https://openalex.org/W2151311229","https://openalex.org/W2153635508","https://openalex.org/W2157576293","https://openalex.org/W2157892451","https://openalex.org/W2158100564","https://openalex.org/W2158714788","https://openalex.org/W2160690759","https://openalex.org/W2161062388","https://openalex.org/W2162354472","https://openalex.org/W2166814967","https://openalex.org/W2167315103","https://openalex.org/W2167785155","https://openalex.org/W2172250191","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W4205762803","https://openalex.org/W2535856026","https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W2265065644","https://openalex.org/W2134699697","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"The":[0],"identification":[1],"of":[2,17,26,43,54,77,81,101],"protein-protein":[3],"interaction":[4],"sites":[5],"is":[6,106],"an":[7],"essential":[8],"intermediate":[9],"step":[10],"for":[11,62,116,151,162,170],"mutant":[12],"design":[13],"and":[14,36,64,68,83,85,96,134,155,165],"the":[15,40,44,55,58,66,69,75,87,98,102,131,173],"prediction":[16],"protein":[18,93],"networks.":[19],"In":[20],"recent":[21],"years":[22],"a":[23,51,78],"significant":[24],"number":[25],"methods":[27,115],"have":[28,73,110],"been":[29,111],"developed":[30],"to":[31,145],"predict":[32],"these":[33],"interface":[34],"residues":[35],"here":[37],"we":[38],"review":[39],"current":[41],"status":[42],"field.":[45,174],"Progress":[46],"in":[47,90,97,114,125,130,135,140,172],"this":[48],"area":[49],"requires":[50],"clear":[52,107,158],"view":[53],"methodology":[56],"applied,":[57],"data":[59,94],"sets":[60,95],"used":[61],"training":[63,164],"testing":[65],"systems,":[67],"evaluation":[70],"procedures.":[71],"We":[72,148],"analysed":[74],"impact":[76],"representative":[79],"set":[80],"features":[82],"algorithms":[84],"highlighted":[86],"problems":[88],"inherent":[89],"generating":[91],"reliable":[92],"posterior":[99],"analysis":[100],"results.":[103],"Although":[104],"it":[105,157],"that":[108,159],"there":[109],"some":[112],"improvements":[113],"predicting":[117],"interacting":[118],"sites,":[119],"several":[120],"major":[121],"bottlenecks":[122],"remain.":[123],"Proteins":[124],"complexes":[126,142],"are":[127,143,168],"still":[128,144],"under-represented":[129],"structural":[132],"databases":[133],"particular":[136],"many":[137],"proteins":[138],"involved":[139],"transient":[141],"be":[146],"crystallized.":[147],"provide":[149],"suggestions":[150],"effective":[152],"feature":[153],"selection,":[154],"make":[156],"community":[160],"standards":[161],"testing,":[163],"performance":[166],"measures":[167],"necessary":[169],"progress":[171]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":22}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
