{"id":"https://openalex.org/W2146144840","doi":"https://doi.org/10.1093/bib/bbp015","title":"Semantic Web for Health Care and Life Sciences: a review of the state of the art","display_name":"Semantic Web for Health Care and Life Sciences: a review of the state of the art","publication_year":2009,"publication_date":"2009-03-01","ids":{"openalex":"https://openalex.org/W2146144840","doi":"https://doi.org/10.1093/bib/bbp015","mag":"2146144840","pmid":"https://pubmed.ncbi.nlm.nih.gov/19304871"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp015","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/111/449633/bbp015.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/2/111/449633/bbp015.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068543420","display_name":"Kei-Hoi Cheung","orcid":"https://orcid.org/0000-0001-6432-9372"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.-H. Cheung","raw_affiliation_strings":["Center for Medical Informatics, Yale University School ofMedicine, New Haven, CT, USA"],"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Yale University School ofMedicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085014772","display_name":"Emily Prud\u2019hommeaux","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087207","display_name":"World Wide Web Consortium","ror":"https://ror.org/0059y1582","country_code":"US","type":"other","lineage":["https://openalex.org/I4210087207"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Prud'hommeaux","raw_affiliation_strings":["World Wide Web Consortium, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"World Wide Web Consortium, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210087207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Wang","raw_affiliation_strings":["Lilly Singapore Centre for Drug Discovery, Singapore and"],"affiliations":[{"raw_affiliation_string":"Lilly Singapore Centre for Drug Discovery, Singapore and","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084721167","display_name":"Susie Stephens","orcid":null},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Stephens","raw_affiliation_strings":["Discovery IT, Eli Lilly, Indianapolis, IN, USA"],"affiliations":[{"raw_affiliation_string":"Discovery IT, Eli Lilly, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068543420"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0127,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.86502633,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"2","first_page":"111","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.7523456811904907},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6419328451156616},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5862369537353516},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.5669789910316467},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5149160623550415},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.49319761991500854},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.42419418692588806},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41811349987983704},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.41724783182144165},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.4127340316772461},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.32406407594680786},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20603284239768982}],"concepts":[{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.7523456811904907},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6419328451156616},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5862369537353516},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.5669789910316467},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5149160623550415},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.49319761991500854},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.42419418692588806},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41811349987983704},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.41724783182144165},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.4127340316772461},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.32406407594680786},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20603284239768982},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004493","descriptor_name":"Education","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004493","descriptor_name":"Education","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004493","descriptor_name":"Education","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp015","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/111/449633/bbp015.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19304871","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19304871","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2659295","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2659295","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp015","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/111/449633/bbp015.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.550000011920929,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146144840.pdf","grobid_xml":"https://content.openalex.org/works/W2146144840.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W289675543","https://openalex.org/W1972562308"],"related_works":["https://openalex.org/W2349698472","https://openalex.org/W1975429881","https://openalex.org/W2279098064","https://openalex.org/W1585941060","https://openalex.org/W2551975015","https://openalex.org/W2366430559","https://openalex.org/W4211114681","https://openalex.org/W2363068772","https://openalex.org/W172932732","https://openalex.org/W2779513816"],"abstract_inverted_index":{"Biomedical":[0],"researchers":[1,838],"need":[2,950],"to":[3,6,17,24,30,57,62,136,163,178,188,316,343,399,405,412,426,464,491,508,539,567,582,609,635,651,658,723,746,772,783,818,836,839,855,864,913,928,945,951,956,981,985],"be":[4,31,48,58,862,952],"able":[5],"ask":[7],"questions":[8,983],"that":[9,21,332,339,346,358,369,396,577,684,716,769,948,978],"span":[10],"many":[11],"heterogeneous":[12,104,460,543],"data":[13,36,55,69,91,105,119,127,363,372,408,461,544,586,604,611,681,687,696,714,754,788,791,848],"sources":[14,546,899],"in":[15,64,68,83,128,166,197,227,244,268,290,338,365,415,447,547,622,646,824,846,954],"order":[16,955],"make":[18,317,568],"well-informed":[19],"decisions":[20],"may":[22],"lead":[23],"important":[25],"scientific":[26,729],"breakthroughs.":[27],"For":[28],"this":[29,211,245,252,647,779],"achieved,":[32],"diverse":[33,428,790],"types":[34],"of":[35,79,86,90,103,113,126,134,169,184,200,209,238,247,263,277,283,299,320,361,424,470,484,550,558,565,599,692,699,720,728,737,759,799,810,827,867,887,919,932,968,988],"about":[37,571],"drugs,":[38],"patients,":[39],"diseases,":[40],"proteins,":[41],"cells,":[42],"pathways":[43],"and":[44,66,71,111,122,131,155,180,192,195,203,222,242,259,297,384,475,515,534,591,605,613,667,694,707,750,766,785,808,821,878,893,900,917,937,944,961],"so":[45],"on":[46,215,307],"must":[47],"effectively":[49],"integrated.":[50],"Yet,":[51],"linking":[52],"disparate":[53],"biomedical":[54,270,448,828,895],"continues":[56],"a":[59,207,213,236,261,355,389,410,440,597,652,689,704,760,763,795,825,833,910,942,974],"challenge":[60],"due":[61],"inconsistency":[63],"naming":[65],"heterogeneity":[67],"models":[70,117],"formats.\r\n\r\nMany":[72],"organizations":[73,165],"are":[74,341,580,853],"now":[75],"exploring":[76],"the":[77,84,88,98,132,149,170,182,198,216,239,248,256,278,281,295,308,311,318,321,333,344,359,366,371,397,416,422,434,468,471,479,485,523,548,556,725,734,773,806,811,865,885,905,915,930,966,969,986,989],"use":[78,183,423,557,886],"Semantic":[80,99,150,171,185,217,264,284,417,623,743,815,888,921,934],"Web":[81,100,143,151,186,218,265,285,391,453,624,744,816,889,922,935],"technologies":[82,187,625,745,890],"hope":[85],"easing":[87],"cost":[89],"integration":[92,102,682],"[1].":[93],"The":[94,173,233,292,431,481,502,553,616,709,756,775,830,902,924,963],"benefits":[95,918],"promised":[96],"by":[97,287,637,972],"include":[101],"using":[106,671,814,920],"explicit":[107,116],"semantics,":[108],"simplified":[109],"annotation":[110],"sharing":[112,612],"findings,":[114],"rich":[115],"for":[118,152,219,280,350,443,497,532,601,631,797,813,891,939],"representation,":[120],"aggregation":[121],"search,":[123],"easier":[124],"re-use":[125],"unanticipated":[129],"ways,":[130],"application":[133,378],"logic":[135],"infer":[137],"additional":[138],"information":[139,537,608,639],"[2].\r\n\r\nThe":[140],"World":[141],"Wide":[142],"Consortium":[144],"(W3C)":[145],"(http://www.w3.org/)":[146],"has":[147,505,519],"established":[148],"Health":[153,201,220],"Care":[154,202,221],"Life":[156,204,223],"Sciences":[157,224],"Interest":[158],"Group":[159],"(HCLS":[160],"IG)":[161],"(http://www.w3.org/2001/sw/hcls/)":[162],"help":[164],"their":[167],"adoption":[168,196,282],"Web.":[172],"HCLS":[174],"IG":[175],"is":[176,336,382,409,488,701],"chartered":[177],"develop":[179],"support":[181,583,590,724],"improve":[189],"collaboration,":[190],"research":[191,243],"development,":[193],"innovation,":[194],"domains":[199],"Sciences.":[205],"As":[206],"part":[208],"realizing":[210],"vision,":[212],"workshop":[214,234,258],"was":[225],"organized":[226],"conjunction":[228],"with":[229,310,640,649,703,843],"WWW2008":[230],"(http://esw.w3.org/topic/HCLS/WWW2008)":[231],"[3].":[232],"provided":[235],"review":[237,260,679,884],"latest":[240],"positions":[241],"domain.\r\n\r\nFive":[246],"seven":[249],"papers":[250],"within":[251],"issue":[253],"originated":[254],"from":[255,545,688,897],"HCLS/WWW2008":[257],"range":[262,826],"technologies/approaches":[266],"employed":[267],"different":[269,563],"domains.\r\n\r\nVandervalk":[271],"et":[272,419,526,594,677,803,882],"al.":[273,420,527,595,678,804,883],"describe":[274,528],"\u2018The":[275],"State":[276],"Union\u2019":[279],"standards":[286],"key":[288],"institutes":[289],"bioinformatics.":[291],"paper":[293,432,554,617,710,776,831,903,964],"explores":[294],"nature":[296],"connectivity":[298],"several":[300,680],"community-driven":[301],"semantic":[302,718,858],"warehousing":[303],"projects.":[304],"It":[305,329,352,393,574,643,793],"reports":[306],"progress":[309,645],"CardioSHARE/Moby-2":[312],"project,":[313],"which":[314,656,700],"aims":[315,657],"resources":[319,345,462],"\u2018Deep":[322,367],"Web\u2019":[323],"transparently":[324],"accessible":[325],"through":[326,663],"SPARQL":[327],"queries.":[328],"points":[330],"out":[331],"warehouse":[334],"approach":[335,780],"limited,":[337],"queries":[340,977],"confined":[342],"have":[347,388,626],"been":[348,506],"selected":[349],"inclusion.":[351],"also":[353,394,575],"discusses":[354],"related":[356,607,634],"problem":[357],"majority":[360],"bioinformatics":[362,407],"exist":[364,375],"Web\u2019,":[368],"is,":[370],"does":[373,386],"not":[374,387],"until":[376],"an":[377,493,712,767],"or":[379],"analytical":[380],"tool":[381],"invoked,":[383],"therefore":[385],"predictable":[390],"address.":[392],"highlights":[395],"inability":[398],"utilize":[400],"Uniform":[401],"Resource":[402],"Identifiers":[403],"(URIs)":[404],"address":[406],"barrier":[411],"its":[413,959],"accessibility":[414],"Web.\r\n\r\nDas":[418],"discuss":[421,596],"ontologies":[425],"bridge":[427],"Web-based":[429],"communities.":[430],"introduces":[433,832],"Science":[435],"Collaboration":[436],"Framework":[437],"(SCF)":[438],"as":[439,512],"reusable":[441],"platform":[442,796],"advanced":[444],"online":[445,495],"collaboration":[446],"research.":[449],"SCF":[450,486,503],"supports":[451],"structured":[452],"2.0":[454],"community":[455,496],"discourse":[456,477],"amongst":[457],"researchers,":[458],"makes":[459],"available":[463],"collaborating":[465],"scientists,":[466],"captures":[467],"semantics":[469],"relationships":[472],"between":[473,542],"resources,":[474],"structures":[476],"around":[478],"resources.":[480],"first":[482],"instance":[483],"framework":[487,504,835],"being":[489],"used":[490,854],"create":[492],"open-access":[494],"stem":[498],"cell":[499],"research\u2014StemBook":[500],"(http://www.stembook.org).":[501],"applied":[507,863],"interdisciplinary":[509],"areas":[510],"such":[511,941],"neurodegenerative":[513],"disease":[514],"neuro-repair":[516],"research,":[517],"but":[518],"broad":[520],"utility":[521,967],"across":[522,789],"natural":[524],"sciences.\r\n\r\nZhao":[525],"various":[529],"design":[530],"patterns":[531],"representing":[533,638],"querying":[535,894],"provenance":[536,569],"relating":[538],"mapping":[540,719],"links":[541],"domain":[549],"functional":[551],"genomics.":[552],"illustrates":[555,644],"named":[559],"RDF":[560],"graphs":[561],"at":[562],"levels":[564],"granularity":[566],"assertions":[570,579],"linked":[572],"data.":[573],"demonstrates":[576,965],"these":[578],"sufficient":[581],"requirements":[584],"including":[585],"currency,":[587],"integrity,":[588],"evidential":[589],"historical":[592],"queries.\r\n\r\nDumontier":[593],"number":[598],"approaches":[600,683],"capturing":[602],"pharmacogenomic":[603],"other":[606],"facilitate":[610,659],"knowledge":[614,632,661,665,823,896,908,970],"discovery.":[615],"describes":[618,777],"how":[619,778,857],"recent":[620],"advances":[621],"presented":[627],"exciting":[628],"new":[629],"opportunities":[630],"discovery":[633,662,730],"pharmacogenomics":[636,660],"machine-understandable":[641],"semantics.":[642],"area":[648],"respect":[650],"personalized":[653],"medicine":[654],"project":[655],"intuitive":[664],"capture":[666],"sophisticated":[668],"question":[669],"answering":[670],"automated":[672],"reasoning":[673,845],"over":[674],"expressive":[675],"ontologies.\r\n\r\nManning":[676],"involve":[685],"extracting":[686],"wide":[690],"variety":[691],"public":[693],"private":[695],"repositories,":[697],"each":[698],"associated":[702],"unique":[705],"vocabulary":[706],"schema.":[708],"presents":[711,904],"implemented":[713],"architecture":[715,757],"leverages":[717],"experimental":[721],"metadata":[722,761,764],"rapid":[726],"development":[727,798],"applications.":[731],"This":[732],"achieves":[733],"twin":[735],"goals":[736],"reducing":[738],"architectural":[739],"complexity":[740],"while":[741],"leveraging":[742],"provide":[747,979],"flexibility,":[748],"efficiency":[749],"more":[751],"fully":[752],"characterized":[753],"relationships.":[755],"consists":[758],"ontology,":[762],"repository":[765],"interface":[768],"allows":[770,781,926],"access":[771],"repository.":[774],"scientists":[782],"discover":[784],"link":[786],"relevant":[787,984],"sources.":[792],"provides":[794],"integrative":[800],"informatics":[801],"applications.\r\n\r\nChen":[802],"survey":[805],"feasibility":[807,916],"state":[809],"art":[812],"technology":[817],"represent,":[819],"integrate":[820,840],"analyze":[822],"networks.":[829],"conceptual":[834],"enable":[837],"graph":[841,859],"mining":[842,860],"ontology":[844],"network":[847],"analysis.":[849],"Four":[850],"case":[851],"studies":[852],"demonstrate":[856],"can":[861],"analysis":[866,877],"disease-causal":[868],"genes,":[869],"Gene":[870],"Ontology":[871],"(GO)":[872],"category":[873],"cross-talks,":[874],"drug":[875],"efficacy":[876],"herb\u2013drug":[879],"interaction":[880],"analysis.\r\n\r\nRuttenberg":[881],"assembling":[892],"multiple":[898],"disciplines.":[901],"Neurocommons":[906],"prototype":[907,925],"base,":[909],"demonstration":[911],"intended":[912],"show":[914],"technologies.":[923],"one":[927],"explore":[929],"scalability":[931],"current":[933],"tools":[936],"methods":[938],"creating":[940],"resource,":[943],"reveal":[946],"issues":[947],"will":[949],"addressed":[953],"further":[957],"expand":[958],"scope":[960],"use.":[962],"base":[971],"reviewing":[973],"few":[975],"example":[976],"answers":[980],"precise":[982],"understanding":[987],"disease.":[990]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
