{"id":"https://openalex.org/W2108177663","doi":"https://doi.org/10.1093/bib/bbp004","title":"Life sciences on the Semantic Web: the Neurocommons and beyond","display_name":"Life sciences on the Semantic Web: the Neurocommons and beyond","publication_year":2009,"publication_date":"2009-03-01","ids":{"openalex":"https://openalex.org/W2108177663","doi":"https://doi.org/10.1093/bib/bbp004","mag":"2108177663","pmid":"https://pubmed.ncbi.nlm.nih.gov/19282504"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp004","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/193/449212/bbp004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/2/193/449212/bbp004.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053171726","display_name":"Alan Ruttenberg","orcid":"https://orcid.org/0000-0002-1604-3078"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"A. Ruttenberg","raw_affiliation_strings":["Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands","Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands#TAB#"],"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands#TAB#","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069448726","display_name":"Jonathan Rees","orcid":"https://orcid.org/0000-0001-7694-8250"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. A. Rees","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082184364","display_name":"Matthias Samwald","orcid":"https://orcid.org/0000-0002-4855-2571"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Samwald","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5075308601","display_name":"Michael S. Marshall","orcid":"https://orcid.org/0000-0002-5742-2031"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. S. Marshall","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053171726"],"corresponding_institution_ids":["https://openalex.org/I887064364"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.8745,"has_fulltext":false,"cited_by_count":105,"citation_normalized_percentile":{"value":0.97730461,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"2","first_page":"193","last_page":"204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.831828236579895},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.806845486164093},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6707866787910461},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5646084547042847},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.5645824074745178},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5486453771591187},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.5337755680084229},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.5046404600143433},{"id":"https://openalex.org/keywords/knowledge-integration","display_name":"Knowledge integration","score":0.4918985366821289},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4813271760940552},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.47745445370674133},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4442577064037323},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3471629023551941},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18011370301246643},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12228471040725708}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.831828236579895},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.806845486164093},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6707866787910461},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5646084547042847},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5645824074745178},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5486453771591187},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.5337755680084229},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.5046404600143433},{"id":"https://openalex.org/C56289545","wikidata":"https://www.wikidata.org/wiki/Q6423376","display_name":"Knowledge integration","level":3,"score":0.4918985366821289},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4813271760940552},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.47745445370674133},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4442577064037323},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3471629023551941},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18011370301246643},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12228471040725708},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbp004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp004","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/193/449212/bbp004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19282504","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19282504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:http://www.rian.ie/158534/","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/13736","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp004","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/193/449212/bbp004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108177663.pdf","grobid_xml":"https://content.openalex.org/works/W2108177663.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W9819757","https://openalex.org/W25291860","https://openalex.org/W648950042","https://openalex.org/W1480615301","https://openalex.org/W1487060125","https://openalex.org/W1501546233","https://openalex.org/W1521731078","https://openalex.org/W1527927437","https://openalex.org/W1528535511","https://openalex.org/W1601001196","https://openalex.org/W1651004564","https://openalex.org/W1975942563","https://openalex.org/W1981133869","https://openalex.org/W1984422860","https://openalex.org/W1990683357","https://openalex.org/W1998671175","https://openalex.org/W2001230248","https://openalex.org/W2099218891","https://openalex.org/W2101595316","https://openalex.org/W2103260426","https://openalex.org/W2104942450","https://openalex.org/W2106791611","https://openalex.org/W2113142309","https://openalex.org/W2123491442","https://openalex.org/W2128601422","https://openalex.org/W2133034723","https://openalex.org/W2137999759","https://openalex.org/W2154829072","https://openalex.org/W2155232871","https://openalex.org/W2156892696","https://openalex.org/W2165428180","https://openalex.org/W2165433828","https://openalex.org/W2180180358","https://openalex.org/W2242459625","https://openalex.org/W2918103525","https://openalex.org/W4230392683"],"related_works":["https://openalex.org/W2416704114","https://openalex.org/W1975429881","https://openalex.org/W2349698472","https://openalex.org/W2366430559","https://openalex.org/W2013055153","https://openalex.org/W1985801232","https://openalex.org/W2025728896","https://openalex.org/W2139046554","https://openalex.org/W1585941060","https://openalex.org/W1979978247"],"abstract_inverted_index":{"Translational":[0],"research,":[1],"the":[2,6,16,57,86,105,115,135,161,169,172,189,196,208],"effort":[3],"to":[4,11,18,42,51,113,130,148,154,159,184,188,206],"couple":[5],"results":[7],"of":[8,59,88,119,137,165,171,191,195],"basic":[9],"research":[10],"clinical":[12],"applications,":[13],"depends":[14],"on":[15,34],"ability":[17],"effectively":[19],"answer":[20],"questions":[21,186],"using":[22,37,120],"information":[23,36,44],"that":[24,43,151,181],"spans":[25],"multiple":[26,99],"disciplines.":[27,102],"The":[28,123],"Semantic":[29,89],"Web,":[30],"with":[31,132,213],"its":[32],"emphasis":[33],"combining":[35],"standard":[38,46],"representation":[39],"languages,":[40],"access":[41],"via":[45],"web":[47],"protocols,":[48],"and":[49,61,67,73,94,101,117,133,140,147,163,211],"technologies":[50],"leverage":[52],"computation,":[53],"such":[54,144],"as":[55],"in":[56,157],"form":[58],"inference":[60],"distributable":[62],"query,":[63],"offers":[64],"a":[65,110,145,177],"social":[66],"technological":[68],"basis":[69],"for":[70,92,142],"assembling,":[71],"integrating":[72],"making":[74],"available":[75,201],"biomedical":[76,96],"knowledge":[77,97,108,125,173,197,209],"at":[78,202],"Web":[79,90],"scale.":[80],"In":[81],"this":[82,214],"article,":[83],"we":[84],"discuss":[85],"use":[87,164],"technology":[91],"assembling":[93],"querying":[95],"from":[98],"sources":[100],"We":[103,167],"present":[104],"Neurocommons":[106],"prototype":[107,124],"base,":[109],"demonstration":[111],"intended":[112],"show":[114],"feasibility":[116],"benefits":[118],"these":[121],"technologies.":[122],"base":[126,174,198,210],"can":[127],"be":[128,155],"used":[129],"experiment":[131,212],"assess":[134],"scalability":[136],"current":[138],"tools":[139],"methods":[141],"creating":[143],"resource,":[146],"elicit":[149],"issues":[150],"will":[152],"need":[153],"addressed":[156],"order":[158],"expand":[160],"scope":[162],"it.":[166],"demonstrate":[168],"utility":[170],"by":[175],"reviewing":[176],"few":[178],"example":[179],"queries":[180],"provide":[182],"answers":[183],"precise":[185],"relevant":[187],"understanding":[190],"disease.":[192],"All":[193],"components":[194],"are":[199],"freely":[200],"http://neurocommons.org/,":[203],"enabling":[204],"readers":[205],"reconstruct":[207],"new":[215],"technology.":[216]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":13}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
