{"id":"https://openalex.org/W2123375001","doi":"https://doi.org/10.1093/bib/bbp001","title":"A survey of available tools and web servers for analysis of protein-protein interactions and interfaces","display_name":"A survey of available tools and web servers for analysis of protein-protein interactions and interfaces","publication_year":2008,"publication_date":"2008-12-06","ids":{"openalex":"https://openalex.org/W2123375001","doi":"https://doi.org/10.1093/bib/bbp001","mag":"2123375001","pmid":"https://pubmed.ncbi.nlm.nih.gov/19240123"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbp001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp001","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/217/557371/bbp001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/3/217/557371/bbp001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050761928","display_name":"Nurcan Tun\u00e7ba\u011f","orcid":"https://orcid.org/0000-0002-0389-9459"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"N. Tuncbag","raw_affiliation_strings":["Computational Sciences and Engineering Program at Koc University, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Program at Koc University, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035268040","display_name":"Guruprasad Kar","orcid":"https://orcid.org/0000-0002-7294-3572"},"institutions":[{"id":"https://openalex.org/I4210167018","display_name":"Interaction Design (United Kingdom)","ror":"https://ror.org/03qfyes53","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210167018"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. Kar","raw_affiliation_strings":["Gozde Kar is a first-year PhD student at the Chemical and Biological Engineering Program at Koc University, Istanbul. She has been working on protein interaction networks"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gozde Kar is a first-year PhD student at the Chemical and Biological Engineering Program at Koc University, Istanbul. She has been working on protein interaction networks","institution_ids":["https://openalex.org/I4210167018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"O. Keskin","raw_affiliation_strings":["Ozlem Keskin is an associate professor at the Chemical and Biological Engineering Department and the Center for Computational Biology and Bioinformatics at Koc University, Istanbul. Her research focuses on the computational studies of protein interactions and dynamics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ozlem Keskin is an associate professor at the Chemical and Biological Engineering Department and the Center for Computational Biology and Bioinformatics at Koc University, Istanbul. Her research focuses on the computational studies of protein interactions and dynamics","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"A. Gursoy","raw_affiliation_strings":["Attila Gursoy is an associate professor at the Computer Engineering Department and the Center for Computational Biology and Bioinformatics at Koc University, Istanbul. His research focuses on the computational studies of protein interactions and parallel computing"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Attila Gursoy is an associate professor at the Computer Engineering Department and the Center for Computational Biology and Bioinformatics at Koc University, Istanbul. His research focuses on the computational studies of protein interactions and parallel computing","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025357844","display_name":"Ruth Nussinov","orcid":"https://orcid.org/0000-0002-8115-6415"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210151430","display_name":"Institute of Aging","ror":"https://ror.org/044mbfr67","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210151430"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"R. Nussinov","raw_affiliation_strings":["Ruth Nussinov is a professor in the Department of Human Genetics, Medical School, Tel Aviv University, and a Senior Principal Investigator at the SAIC, National Cancer Institute, USA. Her research focuses on computational studies of protein folding, binding and function","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ruth Nussinov is a professor in the Department of Human Genetics, Medical School, Tel Aviv University, and a Senior Principal Investigator at the SAIC, National Cancer Institute, USA. Her research focuses on computational studies of protein folding, binding and function","institution_ids":["https://openalex.org/I4210151430"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.7738,"has_fulltext":true,"cited_by_count":158,"citation_normalized_percentile":{"value":0.95742354,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"10","issue":"3","first_page":"217","last_page":"232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.7526558041572571},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7493214011192322},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.6228664517402649},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5227782130241394},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4088941514492035},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3838343620300293},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21585410833358765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1098659336566925}],"concepts":[{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.7526558041572571},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7493214011192322},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.6228664517402649},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5227782130241394},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4088941514492035},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3838343620300293},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21585410833358765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1098659336566925},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016159","descriptor_name":"Tumor Suppressor Protein p53","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016283","descriptor_name":"Proto-Oncogene Proteins p21(ras)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbp001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp001","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/217/557371/bbp001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19240123","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19240123","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:open.metu.edu.tr:11511/31146","is_oa":true,"landing_page_url":"https://hdl.handle.net/11511/31146","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2671387","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2671387","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbp001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbp001","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/217/557371/bbp001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3277247684","display_name":null,"funder_award_id":"N01-CO-12400","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7504989611","display_name":null,"funder_award_id":"N01-CO-12400","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"},{"id":"https://openalex.org/F4320322628","display_name":"T\u00fcrkiye Bilimler Akademisi","ror":"https://ror.org/00aqt9352"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123375001.pdf","grobid_xml":"https://content.openalex.org/works/W2123375001.grobid-xml"},"referenced_works_count":165,"referenced_works":["https://openalex.org/W1508421499","https://openalex.org/W1526151739","https://openalex.org/W1575542444","https://openalex.org/W1647597862","https://openalex.org/W1663215571","https://openalex.org/W1792865908","https://openalex.org/W1958621998","https://openalex.org/W1964167423","https://openalex.org/W1965582988","https://openalex.org/W1967408543","https://openalex.org/W1968430567","https://openalex.org/W1974480392","https://openalex.org/W1977414257","https://openalex.org/W1977845138","https://openalex.org/W1979107927","https://openalex.org/W1979366468","https://openalex.org/W1985153601","https://openalex.org/W1985222378","https://openalex.org/W1986046522","https://openalex.org/W1986512768","https://openalex.org/W1988152696","https://openalex.org/W1988422871","https://openalex.org/W1989233227","https://openalex.org/W1992806534","https://openalex.org/W1997803213","https://openalex.org/W1998063251","https://openalex.org/W1998569806","https://openalex.org/W1999390565","https://openalex.org/W2000980755","https://openalex.org/W2001457899","https://openalex.org/W2006124679","https://openalex.org/W2010122910","https://openalex.org/W2013988051","https://openalex.org/W2019538182","https://openalex.org/W2019691413","https://openalex.org/W2021954541","https://openalex.org/W2023048070","https://openalex.org/W2023490488","https://openalex.org/W2026370952","https://openalex.org/W2029667189","https://openalex.org/W2030885701","https://openalex.org/W2031772330","https://openalex.org/W2035503835","https://openalex.org/W2036481539","https://openalex.org/W2037442572","https://openalex.org/W2040765122","https://openalex.org/W2041673942","https://openalex.org/W2043699100","https://openalex.org/W2044152132","https://openalex.org/W2045197143","https://openalex.org/W2046407284","https://openalex.org/W2051710717","https://openalex.org/W2051810521","https://openalex.org/W2052466177","https://openalex.org/W2054118816","https://openalex.org/W2055034629","https://openalex.org/W2056034415","https://openalex.org/W2058527555","https://openalex.org/W2061963184","https://openalex.org/W2065304353","https://openalex.org/W2066311224","https://openalex.org/W2070360032","https://openalex.org/W2071704671","https://openalex.org/W2072582089","https://openalex.org/W2075770210","https://openalex.org/W2077776336","https://openalex.org/W2081912151","https://openalex.org/W2084426169","https://openalex.org/W2084949662","https://openalex.org/W2085902776","https://openalex.org/W2091563009","https://openalex.org/W2092387745","https://openalex.org/W2093689899","https://openalex.org/W2094090446","https://openalex.org/W2094148990","https://openalex.org/W2095761477","https://openalex.org/W2097036913","https://openalex.org/W2098151554","https://openalex.org/W2099672241","https://openalex.org/W2100494857","https://openalex.org/W2103485392","https://openalex.org/W2104760790","https://openalex.org/W2105438341","https://openalex.org/W2106993162","https://openalex.org/W2110120447","https://openalex.org/W2110869427","https://openalex.org/W2115156437","https://openalex.org/W2115410056","https://openalex.org/W2115879729","https://openalex.org/W2117319571","https://openalex.org/W2123280311","https://openalex.org/W2123583836","https://openalex.org/W2124013748","https://openalex.org/W2124036707","https://openalex.org/W2124112137","https://openalex.org/W2124904677","https://openalex.org/W2126048802","https://openalex.org/W2127073167","https://openalex.org/W2127495252","https://openalex.org/W2128276810","https://openalex.org/W2128402268","https://openalex.org/W2129558039","https://openalex.org/W2130479394","https://openalex.org/W2130606742","https://openalex.org/W2130675570","https://openalex.org/W2131473950","https://openalex.org/W2132582966","https://openalex.org/W2133842820","https://openalex.org/W2135805255","https://openalex.org/W2136224545","https://openalex.org/W2136525667","https://openalex.org/W2137786672","https://openalex.org/W2139074914","https://openalex.org/W2140798893","https://openalex.org/W2140875146","https://openalex.org/W2141149420","https://openalex.org/W2141627824","https://openalex.org/W2142808579","https://openalex.org/W2142843496","https://openalex.org/W2143881057","https://openalex.org/W2144014661","https://openalex.org/W2146279689","https://openalex.org/W2147871557","https://openalex.org/W2148219066","https://openalex.org/W2150192011","https://openalex.org/W2150444353","https://openalex.org/W2150926065","https://openalex.org/W2151460035","https://openalex.org/W2152281406","https://openalex.org/W2152444476","https://openalex.org/W2153255725","https://openalex.org/W2153499430","https://openalex.org/W2153731681","https://openalex.org/W2153983456","https://openalex.org/W2154937472","https://openalex.org/W2155723007","https://openalex.org/W2156070536","https://openalex.org/W2157576293","https://openalex.org/W2157735020","https://openalex.org/W2158100564","https://openalex.org/W2158919479","https://openalex.org/W2160223767","https://openalex.org/W2160232999","https://openalex.org/W2160690759","https://openalex.org/W2160848247","https://openalex.org/W2160868144","https://openalex.org/W2162502996","https://openalex.org/W2163352757","https://openalex.org/W2163462520","https://openalex.org/W2163485494","https://openalex.org/W2163561348","https://openalex.org/W2163740345","https://openalex.org/W2164391585","https://openalex.org/W2165214884","https://openalex.org/W2167869241","https://openalex.org/W2168164063","https://openalex.org/W2168909179","https://openalex.org/W2170421654","https://openalex.org/W2170872475","https://openalex.org/W2214314614","https://openalex.org/W3025428150","https://openalex.org/W4232887975","https://openalex.org/W4236956086","https://openalex.org/W4251702375","https://openalex.org/W4255855797"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W2137014442","https://openalex.org/W2049015391","https://openalex.org/W1533158771","https://openalex.org/W122082928","https://openalex.org/W2521397622","https://openalex.org/W4294067941","https://openalex.org/W2104288289","https://openalex.org/W2128825190"],"abstract_inverted_index":{"The":[0],"unanimous":[1],"agreement":[2],"that":[3,123],"cellular":[4],"processes":[5],"are":[6,93],"(largely)":[7],"governed":[8],"by":[9,47],"interactions":[10],"between":[11],"proteins":[12],"has":[13],"led":[14],"to":[15,24,27,33,41,60,70,78,86,104],"enormous":[16],"community":[17],"efforts":[18],"culminating":[19],"in":[20,36,55,76],"overwhelming":[21],"information":[22],"relating":[23],"these":[25,48,62,106],"proteins;":[26],"the":[28,34,42,94,128],"regulation":[29],"of":[30,73,83,121,130],"their":[31],"interactions,":[32],"way":[35],"which":[37,44,84],"they":[38],"interact":[39],"and":[40,57,97,99],"function":[43],"is":[45,66,114,124,127],"determined":[46],"interactions.":[49],"These":[50],"data":[51],"have":[52,79],"been":[53],"organized":[54],"databases":[56],"servers.":[58],"However,":[59],"make":[61],"really":[63],"useful,":[64],"it":[65,113],"essential":[67],"not":[68,115],"only":[69],"be":[71],"aware":[72],"these,":[74],"but":[75,118],"particular":[77,109],"a":[80,89,108],"working":[81],"knowledge":[82],"tools":[85],"use":[87],"for":[88,107],"given":[90],"problem;":[91],"what":[92],"tool":[95],"advantages":[96],"drawbacks;":[98],"no":[100],"less":[101],"important":[102],"how":[103],"combine":[105],"goal":[110,129],"since":[111],"usually":[112],"one":[116],"tool,":[117],"some":[119],"combination":[120],"tool-modules":[122],"needed.":[125],"This":[126],"this":[131],"review.":[132]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":20},{"year":2012,"cited_by_count":30}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
