{"id":"https://openalex.org/W1991645955","doi":"https://doi.org/10.1093/bib/bbn058","title":"A roadmap of clustering algorithms: finding a match for a biomedical application","display_name":"A roadmap of clustering algorithms: finding a match for a biomedical application","publication_year":2008,"publication_date":"2008-12-06","ids":{"openalex":"https://openalex.org/W1991645955","doi":"https://doi.org/10.1093/bib/bbn058","mag":"1991645955","pmid":"https://pubmed.ncbi.nlm.nih.gov/19240124"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn058","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/297/556850/bbn058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/3/297/556850/bbn058.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112503456","display_name":"B. Andreopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"B. Andreopoulos","raw_affiliation_strings":["Biotechnological Centre, Technische Universit\u00e4t Dresden, Germany. williama@biotec.tu-dresden.de"],"affiliations":[{"raw_affiliation_string":"Biotechnological Centre, Technische Universit\u00e4t Dresden, Germany. williama@biotec.tu-dresden.de","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009394818","display_name":"Aijun An","orcid":"https://orcid.org/0000-0003-1765-5751"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. An","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100444820","display_name":"Xiaogang Wang","orcid":"https://orcid.org/0000-0002-7929-5889"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"X. Wang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Schroeder","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5112503456"],"corresponding_institution_ids":["https://openalex.org/I78650965"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.181,"has_fulltext":false,"cited_by_count":216,"citation_normalized_percentile":{"value":0.91928166,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"3","first_page":"297","last_page":"314"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.9081009030342102},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7718715071678162},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.6225951313972473},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6205888390541077},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.6041966676712036},{"id":"https://openalex.org/keywords/canopy-clustering-algorithm","display_name":"Canopy clustering algorithm","score":0.5533719062805176},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4671700894832611},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.4608672559261322},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4415382742881775},{"id":"https://openalex.org/keywords/consensus-clustering","display_name":"Consensus clustering","score":0.41489630937576294},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.382654070854187},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3597785532474518},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34775015711784363}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.9081009030342102},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7718715071678162},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.6225951313972473},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6205888390541077},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.6041966676712036},{"id":"https://openalex.org/C104047586","wikidata":"https://www.wikidata.org/wiki/Q5033439","display_name":"Canopy clustering algorithm","level":4,"score":0.5533719062805176},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4671700894832611},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.4608672559261322},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4415382742881775},{"id":"https://openalex.org/C186767784","wikidata":"https://www.wikidata.org/wiki/Q5162841","display_name":"Consensus clustering","level":5,"score":0.41489630937576294},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.382654070854187},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3597785532474518},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34775015711784363},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbn058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn058","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/297/556850/bbn058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19240124","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19240124","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.330.6888","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.330.6888","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.gsu.edu/~wkim/index_files/ref/roadmapclustering.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbn058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn058","pdf_url":"https://academic.oup.com/bib/article-pdf/10/3/297/556850/bbn058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1991645955.pdf","grobid_xml":"https://content.openalex.org/works/W1991645955.grobid-xml"},"referenced_works_count":150,"referenced_works":["https://openalex.org/W87092222","https://openalex.org/W370143576","https://openalex.org/W1207633162","https://openalex.org/W1486817521","https://openalex.org/W1493217831","https://openalex.org/W1501500081","https://openalex.org/W1513910506","https://openalex.org/W1521206682","https://openalex.org/W1521398555","https://openalex.org/W1523439439","https://openalex.org/W1524704912","https://openalex.org/W1529802779","https://openalex.org/W1549647993","https://openalex.org/W1553420678","https://openalex.org/W1556833935","https://openalex.org/W1560541823","https://openalex.org/W1563816212","https://openalex.org/W1566114229","https://openalex.org/W1633659671","https://openalex.org/W1660133578","https://openalex.org/W1766517752","https://openalex.org/W1783384641","https://openalex.org/W1963987078","https://openalex.org/W1965061252","https://openalex.org/W1969439320","https://openalex.org/W1970169482","https://openalex.org/W1976331192","https://openalex.org/W1976369037","https://openalex.org/W1977186059","https://openalex.org/W1977496278","https://openalex.org/W1986397115","https://openalex.org/W1987782593","https://openalex.org/W1989076816","https://openalex.org/W1995502855","https://openalex.org/W2001860992","https://openalex.org/W2010168796","https://openalex.org/W2010447185","https://openalex.org/W2021680564","https://openalex.org/W2023971898","https://openalex.org/W2034331023","https://openalex.org/W2039934205","https://openalex.org/W2041674806","https://openalex.org/W2048175388","https://openalex.org/W2048987277","https://openalex.org/W2056780622","https://openalex.org/W2057682468","https://openalex.org/W2057712948","https://openalex.org/W2063036182","https://openalex.org/W2064686951","https://openalex.org/W2065304353","https://openalex.org/W2073308541","https://openalex.org/W2073583237","https://openalex.org/W2075565631","https://openalex.org/W2087684630","https://openalex.org/W2094817063","https://openalex.org/W2095897464","https://openalex.org/W2097255042","https://openalex.org/W2097366050","https://openalex.org/W2098946845","https://openalex.org/W2099607215","https://openalex.org/W2102330962","https://openalex.org/W2102794349","https://openalex.org/W2103453943","https://openalex.org/W2104371378","https://openalex.org/W2104608541","https://openalex.org/W2104811588","https://openalex.org/W2107710781","https://openalex.org/W2109174028","https://openalex.org/W2109363337","https://openalex.org/W2109619915","https://openalex.org/W2111773652","https://openalex.org/W2113328051","https://openalex.org/W2116015974","https://openalex.org/W2116130131","https://openalex.org/W2117487426","https://openalex.org/W2118446779","https://openalex.org/W2119842880","https://openalex.org/W2120468118","https://openalex.org/W2120970098","https://openalex.org/W2121297744","https://openalex.org/W2121826958","https://openalex.org/W2122602926","https://openalex.org/W2122943553","https://openalex.org/W2122964432","https://openalex.org/W2124166542","https://openalex.org/W2125780188","https://openalex.org/W2126626732","https://openalex.org/W2126751256","https://openalex.org/W2127218421","https://openalex.org/W2127971792","https://openalex.org/W2128964206","https://openalex.org/W2130158951","https://openalex.org/W2131456395","https://openalex.org/W2131687179","https://openalex.org/W2133140903","https://openalex.org/W2133576408","https://openalex.org/W2135098204","https://openalex.org/W2135187880","https://openalex.org/W2135364554","https://openalex.org/W2136107412","https://openalex.org/W2136850043","https://openalex.org/W2136887407","https://openalex.org/W2137644062","https://openalex.org/W2137683543","https://openalex.org/W2138003801","https://openalex.org/W2138366649","https://openalex.org/W2138582694","https://openalex.org/W2139450862","https://openalex.org/W2139886875","https://openalex.org/W2140190241","https://openalex.org/W2141087758","https://openalex.org/W2144317357","https://openalex.org/W2144544802","https://openalex.org/W2147246240","https://openalex.org/W2147301280","https://openalex.org/W2147758638","https://openalex.org/W2149230623","https://openalex.org/W2150926065","https://openalex.org/W2151370125","https://openalex.org/W2152515211","https://openalex.org/W2153233077","https://openalex.org/W2154354945","https://openalex.org/W2154370832","https://openalex.org/W2154437541","https://openalex.org/W2154795971","https://openalex.org/W2156125289","https://openalex.org/W2156247618","https://openalex.org/W2158017189","https://openalex.org/W2159460045","https://openalex.org/W2160135458","https://openalex.org/W2160642098","https://openalex.org/W2161732139","https://openalex.org/W2162972849","https://openalex.org/W2163242564","https://openalex.org/W2164803230","https://openalex.org/W2164910356","https://openalex.org/W2165874743","https://openalex.org/W2166558964","https://openalex.org/W2166647826","https://openalex.org/W2167869241","https://openalex.org/W2170040895","https://openalex.org/W2171662214","https://openalex.org/W2186428165","https://openalex.org/W2295815851","https://openalex.org/W2611104316","https://openalex.org/W2913066018","https://openalex.org/W2915642007","https://openalex.org/W2995395573","https://openalex.org/W2999729612","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2559422900","https://openalex.org/W2384052049","https://openalex.org/W4220814143","https://openalex.org/W2087424554","https://openalex.org/W2107260502","https://openalex.org/W2163488696","https://openalex.org/W2118740473","https://openalex.org/W2067669858","https://openalex.org/W4225777930","https://openalex.org/W2060220440"],"abstract_inverted_index":{"Clustering":[0],"is":[1,47],"ubiquitously":[2],"applied":[3],"in":[4],"bioinformatics":[5,42],"with":[6],"hierarchical":[7],"clustering":[8,22,68,77,83,98],"and":[9,37,88,100,104],"k-means":[10],"partitioning":[11],"being":[12],"the":[13,53,94],"most":[14],"popular":[15],"methods.":[16],"Numerous":[17],"improvements":[18],"of":[19,44,55,66,85,96],"these":[20],"two":[21],"methods":[23],"have":[24],"been":[25],"introduced,":[26],"as":[27,29,34,73,106],"well":[28],"completely":[30],"different":[31,82],"approaches":[32,87],"such":[33],"grid-based,":[35],"density-based":[36],"model-based":[38],"clustering.":[39],"For":[40],"improved":[41],"analysis":[43],"data,":[45],"it":[46],"important":[48],"to":[49,52,112],"match":[50],"clusterings":[51],"requirements":[54],"a":[56,64,107],"biomedical":[57,113],"application.":[58],"In":[59],"this":[60],"article,":[61],"we":[62],"present":[63],"set":[65],"desirable":[67,97],"features":[69],"that":[70],"are":[71],"used":[72],"evaluation":[74],"criteria":[75],"for":[76,109],"algorithms.":[78],"We":[79,90],"review":[80],"40":[81],"algorithms":[84,92],"all":[86],"datatypes.":[89],"compare":[91],"on":[93],"basis":[95,108],"features,":[99],"outline":[101],"algorithms'":[102],"benefits":[103],"drawbacks":[105],"matching":[110],"them":[111],"applications.":[114]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":20},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":20}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
