{"id":"https://openalex.org/W2147873108","doi":"https://doi.org/10.1093/bib/bbn052","title":"Building biomedical web communities using a semantically aware content management system","display_name":"Building biomedical web communities using a semantically aware content management system","publication_year":2008,"publication_date":"2008-12-07","ids":{"openalex":"https://openalex.org/W2147873108","doi":"https://doi.org/10.1093/bib/bbn052","mag":"2147873108","pmid":"https://pubmed.ncbi.nlm.nih.gov/19060302"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn052","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062048275","display_name":"Sudeshna Das","orcid":"https://orcid.org/0000-0002-9486-6811"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. Das","raw_affiliation_strings":["Initiative in Innovative Computing, Harvard University, 60 Oxford Street, Cambridge, MA, USA. sudeshna_das@harvard.edu"],"affiliations":[{"raw_affiliation_string":"Initiative in Innovative Computing, Harvard University, 60 Oxford Street, Cambridge, MA, USA. sudeshna_das@harvard.edu","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111887873","display_name":"Lisa Girard","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Girard","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063384980","display_name":"Tom Green","orcid":"https://orcid.org/0000-0001-9096-4476"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Green","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042637481","display_name":"Louis Weitzman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Weitzman","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058274586","display_name":"Alister Lewis-Bowen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Lewis-Bowen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5007020202","display_name":"Tim W. Clark","orcid":"https://orcid.org/0000-0003-4060-7360"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Clark","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5062048275"],"corresponding_institution_ids":["https://openalex.org/I136199984"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.5587,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.89812114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10","issue":"2","first_page":"129","last_page":"138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7206649780273438},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6563997268676758},{"id":"https://openalex.org/keywords/content-management-system","display_name":"Content management system","score":0.6433045864105225},{"id":"https://openalex.org/keywords/content-management","display_name":"Content management","score":0.5788997411727905},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.48223599791526794},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3683626651763916}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7206649780273438},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6563997268676758},{"id":"https://openalex.org/C2987181025","wikidata":"https://www.wikidata.org/wiki/Q131093","display_name":"Content management system","level":2,"score":0.6433045864105225},{"id":"https://openalex.org/C33039251","wikidata":"https://www.wikidata.org/wiki/Q173373","display_name":"Content management","level":2,"score":0.5788997411727905},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.48223599791526794},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3683626651763916}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbn052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn052","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19060302","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19060302","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W96592148","https://openalex.org/W206742063","https://openalex.org/W1518056693","https://openalex.org/W2015396326","https://openalex.org/W2033377040","https://openalex.org/W2036055444","https://openalex.org/W2050028106","https://openalex.org/W2052522161","https://openalex.org/W2055490030","https://openalex.org/W2076327529","https://openalex.org/W2100118900","https://openalex.org/W2113142309","https://openalex.org/W2119662395","https://openalex.org/W2121588207","https://openalex.org/W2123715193","https://openalex.org/W2132586689","https://openalex.org/W2137999759","https://openalex.org/W2146216716","https://openalex.org/W2147407564","https://openalex.org/W2154085356","https://openalex.org/W2161073021","https://openalex.org/W2169826929","https://openalex.org/W3085621369","https://openalex.org/W4231824804","https://openalex.org/W4247085079"],"related_works":["https://openalex.org/W2947368184","https://openalex.org/W1528469901","https://openalex.org/W2333894209","https://openalex.org/W65665365","https://openalex.org/W2031517545","https://openalex.org/W2312221657","https://openalex.org/W4234878310","https://openalex.org/W2376162614","https://openalex.org/W2182204580","https://openalex.org/W2348219777"],"abstract_inverted_index":{"Web-based":[0],"biomedical":[1,54,71,88,122],"communities":[2,28,35,43],"are":[3,15,73,82],"becoming":[4],"an":[5,18,177],"increasingly":[6],"popular":[7],"vehicle":[8],"for":[9,76,86,116,181],"sharing":[10],"information":[11,22,51],"amongst":[12,139],"researchers":[13],"and":[14,24,70,94,128,159,198,221],"fast":[16],"gaining":[17],"online":[19,119,179],"presence.":[20],"However,":[21],"organization":[23],"exchange":[25],"in":[26,98,121,202,213],"such":[27,42,189,217],"is":[29,172,192],"usually":[30],"unstructured,":[31],"rendering":[32],"interoperability":[33],"between":[34],"difficult.":[36],"Furthermore,":[37],"specialized":[38],"software":[39],"to":[40,146,175,194,209],"create":[41,176],"at":[44,47],"low":[45],"cost-targeted":[46],"the":[48,60,77,87,107,147,151,154,157,163,169,231],"specific":[49],"common":[50],"requirements":[52],"of":[53,66,153,168,200],"researchers-has":[55],"been":[56],"largely":[57],"lacking.":[58],"At":[59],"same":[61],"time,":[62],"a":[63,113,190],"growing":[64],"number":[65],"biological":[67],"knowledge":[68],"bases":[69],"resources":[72,144,158,201],"being":[74,173],"structured":[75,118,133],"Semantic":[78],"Web.":[79],"Several":[80],"groups":[81],"creating":[83],"reference":[84],"ontologies":[85,127],"domain,":[89],"actively":[90],"publishing":[91],"controlled":[92],"vocabularies":[93],"making":[95],"data":[96,143],"available":[97,145],"Resource":[99],"Description":[100],"Framework":[101,110],"(RDF)":[102],"language.":[103],"We":[104,186,206],"have":[105],"developed":[106],"Science":[108],"Collaboration":[109],"(SCF)":[111],"as":[112,218,224,226],"reusable":[114],"platform":[115],"advanced":[117],"collaboration":[120],"research":[123],"that":[124,188],"leverages":[125],"these":[126],"RDF":[129],"resources.":[130,164],"SCF":[131,170],"supports":[132],"'Web":[134],"2.0'":[135],"style":[136],"community":[137,180],"discourse":[138,161],"researchers,":[140],"makes":[141],"heterogeneous":[142],"collaborating":[148],"scientist,":[149],"captures":[150],"semantics":[152],"relationship":[155],"among":[156],"structures":[160],"around":[162],"The":[165],"first":[166],"instance":[167],"framework":[171,191],"used":[174],"open-access":[178],"stem":[182],"cell":[183],"research-StemBook":[184],"(http://www.stembook.org).":[185],"believe":[187],"required":[193],"achieve":[195],"optimal":[196],"productivity":[197],"leveraging":[199],"interdisciplinary":[203,215],"scientific":[204],"research.":[205],"expect":[207],"it":[208],"be":[210],"particularly":[211],"beneficial":[212],"highly":[214],"areas,":[216],"neurodegenerative":[219],"disease":[220],"neurorepair":[222],"research,":[223],"well":[225],"having":[227],"broad":[228],"utility":[229],"across":[230],"natural":[232],"sciences.":[233]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
