{"id":"https://openalex.org/W2158351585","doi":"https://doi.org/10.1093/bib/bbn051","title":"Moby and Moby 2: Creatures of the Deep (Web)","display_name":"Moby and Moby 2: Creatures of the Deep (Web)","publication_year":2009,"publication_date":"2009-01-17","ids":{"openalex":"https://openalex.org/W2158351585","doi":"https://doi.org/10.1093/bib/bbn051","mag":"2158351585"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn051","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/114/447825/bbn051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/2/114/447825/bbn051.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065370254","display_name":"Ben Vandervalk","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144237","display_name":"St. Paul's Hospital","ror":"https://ror.org/04d0rfg41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I23625684","https://openalex.org/I4210144237"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"B. P. Vandervalk","raw_affiliation_strings":["Department of Medical Genetics, The Providence Heart + Lung Research Institute at St Paul's Hospital, University of British Columbia, Vancouver, British Columbia V6Z 1Y6, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, The Providence Heart + Lung Research Institute at St Paul's Hospital, University of British Columbia, Vancouver, British Columbia V6Z 1Y6, Canada","institution_ids":["https://openalex.org/I4210144237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078229013","display_name":"Erin McCarthy","orcid":"https://orcid.org/0000-0002-3845-4142"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. L. McCarthy","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5067974158","display_name":"Mark D. Wilkinson","orcid":"https://orcid.org/0000-0001-6960-357X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. D. Wilkinson","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065370254"],"corresponding_institution_ids":["https://openalex.org/I4210144237"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.6959,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.9046266,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"2","first_page":"114","last_page":"128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8006687164306641},{"id":"https://openalex.org/keywords/web-standards","display_name":"Web standards","score":0.6784182786941528},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6761733889579773},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6420314311981201},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.5710930228233337},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.5435779094696045},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.5316810011863708},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.5178790092468262},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.5001139640808105},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.47131210565567017},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.43773338198661804},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23917382955551147},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.23749908804893494}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8006687164306641},{"id":"https://openalex.org/C182321512","wikidata":"https://www.wikidata.org/wiki/Q1153289","display_name":"Web standards","level":3,"score":0.6784182786941528},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6761733889579773},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6420314311981201},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.5710930228233337},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.5435779094696045},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.5316810011863708},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.5178790092468262},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.5001139640808105},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.47131210565567017},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.43773338198661804},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23917382955551147},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.23749908804893494}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bib/bbn051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn051","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/114/447825/bbn051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbn051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn051","pdf_url":"https://academic.oup.com/bib/article-pdf/10/2/114/447825/bbn051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3969565085","display_name":null,"funder_award_id":"Foundation","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320307845","display_name":"Heart and Stroke Foundation of Canada","ror":"https://ror.org/00qbpyp73"},{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314621","display_name":"Heart and Stroke Foundation of British Columbia and Yukon","ror":null},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158351585.pdf","grobid_xml":"https://content.openalex.org/works/W2158351585.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W852643139","https://openalex.org/W1482031469","https://openalex.org/W1505011908","https://openalex.org/W1523774029","https://openalex.org/W1555486317","https://openalex.org/W1603776115","https://openalex.org/W1730348256","https://openalex.org/W1812636409","https://openalex.org/W1972793074","https://openalex.org/W1978799369","https://openalex.org/W1996902131","https://openalex.org/W2047017978","https://openalex.org/W2052522161","https://openalex.org/W2054251921","https://openalex.org/W2063007776","https://openalex.org/W2086886740","https://openalex.org/W2088221426","https://openalex.org/W2094258495","https://openalex.org/W2101491706","https://openalex.org/W2103017472","https://openalex.org/W2107523227","https://openalex.org/W2107580398","https://openalex.org/W2113142309","https://openalex.org/W2119412782","https://openalex.org/W2120789186","https://openalex.org/W2123491442","https://openalex.org/W2125969310","https://openalex.org/W2131448664","https://openalex.org/W2136539307","https://openalex.org/W2143326402","https://openalex.org/W2147714160","https://openalex.org/W2148014577","https://openalex.org/W2150934173","https://openalex.org/W2154139219","https://openalex.org/W2155331065","https://openalex.org/W2156892696","https://openalex.org/W2159482845","https://openalex.org/W2160845726","https://openalex.org/W2161536823","https://openalex.org/W2165428180","https://openalex.org/W2168103533","https://openalex.org/W2169826929","https://openalex.org/W2242459625","https://openalex.org/W2263109111","https://openalex.org/W2264378898","https://openalex.org/W2315135172","https://openalex.org/W2483562931","https://openalex.org/W2555756618","https://openalex.org/W2914098457","https://openalex.org/W3150226989","https://openalex.org/W4248234957","https://openalex.org/W4285719527","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2224596223","https://openalex.org/W2304247352","https://openalex.org/W2363688913","https://openalex.org/W629040509","https://openalex.org/W1656985143","https://openalex.org/W2353857314","https://openalex.org/W2091187368","https://openalex.org/W2039985783","https://openalex.org/W65665365","https://openalex.org/W4299408469"],"abstract_inverted_index":{"Facile":[0],"and":[1,37,53,92,101,157,208,219,227],"meaningful":[2],"integration":[3],"of":[4,13,45,75,106,128,135,194,200,221,243],"data":[5,26,82,137,145,177],"from":[6,83],"disparate":[7],"resources":[8,16,65,117,242],"is":[9,66,110,131,155,178],"the":[10,32,38,58,73,96,107,116,133,140,144,195,198,205,217,234,241,244],"'holy":[11],"grail'":[12],"bioinformatics.":[14],"Some":[15],"have":[17,71,119,161],"begun":[18],"to":[19,95,115,168,174,181,239],"address":[20,175],"this":[21,176],"problem":[22],"by":[23,212],"providing":[24],"their":[25],"using":[27],"Semantic":[28,46,186,201],"Web":[29,39,47,164,187,202,246],"standards,":[30],"specifically":[31],"Resource":[33,171],"Description":[34],"Framework":[35],"(RDF)":[36],"Ontology":[40],"Language":[41],"(OWL).":[42],"Unfortunately,":[43],"adoption":[44,199],"standards":[48,59,203],"has":[49],"been":[50,120],"slow":[51],"overall,":[52],"even":[54],"in":[55,139,204],"cases":[56],"where":[57],"are":[60,113],"being":[61],"utilized,":[62],"interconnectivity":[63],"between":[64],"rare.":[67],"In":[68],"response,":[69],"we":[70,190],"seen":[72],"emergence":[74],"centralized":[76],"'semantic":[77],"warehouses'":[78],"that":[79,111,118,132],"collect":[80],"public":[81],"third":[84],"parties,":[85],"integrate":[86],"it,":[87],"translate":[88],"it":[89,94],"into":[90],"OWL/RDF":[91],"provide":[93],"community":[97],"as":[98],"a":[99,162,179],"unified":[100],"queryable":[102],"resource.":[103],"One":[104],"limitation":[105],"warehouse":[108],"approach":[109],"queries":[112],"confined":[114],"selected":[121],"for":[122,197],"inclusion.":[123],"A":[124],"related":[125],"problem,":[126],"perhaps":[127],"greater":[129],"concern,":[130],"majority":[134],"bioinformatics":[136,214],"exists":[138],"'Deep":[141],"Web'that":[142],"is,":[143],"does":[146,159],"not":[147,160],"exist":[148],"until":[149],"an":[150],"application":[151],"or":[152],"analytical":[153],"tool":[154],"invoked,":[156],"therefore":[158],"predictable":[163],"address.":[165],"The":[166],"inability":[167],"utilize":[169],"Uniform":[170],"Identifiers":[172],"(URIs)":[173],"barrier":[180],"its":[182],"accessibility":[183],"via":[184],"URI-centric":[185],"technologies.":[188],"Here":[189],"examine":[191],"'The":[192],"State":[193],"Union'":[196],"health":[206],"care":[207],"life":[209],"sciences":[210],"domain":[211],"key":[213],"resources,":[215],"explore":[216],"nature":[218],"connectivity":[220],"several":[222],"community-driven":[223],"semantic":[224],"warehousing":[225],"projects,":[226],"report":[228],"on":[229],"our":[230],"own":[231],"progress":[232],"with":[233],"CardioSHARE/Moby-2":[235],"project,":[236],"which":[237],"aims":[238],"make":[240],"Deep":[245],"transparently":[247],"accessible":[248],"through":[249],"SPARQL":[250],"queries.":[251]},"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
