{"id":"https://openalex.org/W2090092983","doi":"https://doi.org/10.1093/bib/bbn046","title":"Data and knowledge integration in the life sciences","display_name":"Data and knowledge integration in the life sciences","publication_year":2008,"publication_date":"2008-07-11","ids":{"openalex":"https://openalex.org/W2090092983","doi":"https://doi.org/10.1093/bib/bbn046","mag":"2090092983","pmid":"https://pubmed.ncbi.nlm.nih.gov/18980960"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn046","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn046","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025916750","display_name":"Stephan Philippi","orcid":null},"institutions":[{"id":"https://openalex.org/I16264642","display_name":"Koblenz University of Applied Sciences","ror":"https://ror.org/04j351e79","country_code":"DE","type":"education","lineage":["https://openalex.org/I16264642"]},{"id":"https://openalex.org/I4387153937","display_name":"Universit\u00e4t Koblenz","ror":"https://ror.org/0433e6t24","country_code":"DE","type":"education","lineage":["https://openalex.org/I4387153937"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"S. Philippi","raw_affiliation_strings":["Dept. of Computer Science, University of Koblenz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, University of Koblenz, Germany","institution_ids":["https://openalex.org/I16264642","https://openalex.org/I4387153937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025916750"],"corresponding_institution_ids":["https://openalex.org/I16264642","https://openalex.org/I4387153937"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":0.2598,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.5856574,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"6","first_page":"451","last_page":"451"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5317116379737854},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48107004165649414},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3417009115219116},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3336719870567322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20821791887283325}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5317116379737854},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48107004165649414},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3417009115219116},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3336719870567322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20821791887283325}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbn046","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn046","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18980960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18980960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Editorial"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2357241418","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W2115485936","https://openalex.org/W3022131925","https://openalex.org/W2349174110","https://openalex.org/W1597238586","https://openalex.org/W1536405386","https://openalex.org/W2326857978","https://openalex.org/W1990780094"],"abstract_inverted_index":{"Data":[0],"integration":[1,42,64,138,174,416,430,481,520,531,553],"is":[2,43,65,92,132,187,235,252,323],"often":[3],"one":[4],"of":[5,34,38,60,70,79,85,101,128,165,175,179,196,201,213,219,232,244,249,272,283,286,296,332,406,443,532,544,567,578,605],"the":[6,10,27,57,82,102,105,110,124,140,163,173,180,184,214,229,284,287,294,307,345,375,404,444,530,565,576,583,591,597],"first":[7,248],"milestones":[8],"on":[9,319,338,433],"long":[11],"road":[12],"to":[13,98,113,120,134,162,210,222,269,325,360,378,439,460,467,495,589,593],"find":[14,223],"a":[15,45,68,75,115,166,339,348,370,455,458,504,526,541],"satisfying":[16],"answer":[17],"for":[18,48,169,263,303,351,374,400,477,498,506,518,529],"an":[19,95,281,316,493],"open":[20],"question.":[21],"Since":[22],"data":[23,63,135,333,361,380,415,429,478,519,550,581],"and":[24,36,50,73,81,109,136,160,172,224,259,278,292,312,381,410,413,424,446,475,479,513,524,551,571,580],"knowledge":[25,137,167,181,227,480,501,552],"in":[26,56,88,130,139,149,183,190,193,237,266,289,363,403,449,482,521,547,600],"life":[28,61,141,185,548],"science":[29,49,62,549],"are":[30,335,452,471,586],"scattered":[31],"over":[32,157],"millions":[33,195],"publications":[35],"thousands":[37],"heterogeneous":[39],"databases,":[40],"their":[41],"still":[44],"major":[46],"challenge":[47],"industry":[51],"alike.":[52],"The":[53,143,199,217,247,329,441,463],"huge":[54,230,330],"interest":[55],"many":[58,146,194],"aspects":[59,243],"documented":[66,236],"by":[67,254],"number":[69],"recurring":[71],"conferences":[72],"workshops,":[74],"fairly":[76],"large":[77],"body":[78],"literature":[80,155,202,234,268,321],"constant":[83],"development":[84],"new":[86,356],"tools":[87,112,474,579],"this":[89,122,150,245,390,468,537,601],"area.":[90],"It":[91],"not":[93,188],"always":[94],"easy":[96],"task":[97],"keep":[99,211],"track":[100,212],"latest":[103,215,598],"concepts,":[104],"most":[106],"promising":[107],"practices":[108],"best":[111],"solve":[114],"given":[116],"problem.":[117],"In":[118,306,535],"order":[119],"help":[121],"situation,":[123],"present":[125,496],"special":[126,384,469,538],"issue":[127,385,470,539],"Briefings":[129],"Bioinformatics":[131],"devoted":[133],"sciences.":[142],"articles":[144,239,251,388,585],"cover":[145,241],"different":[147,242],"topics":[148],"area":[151,604],"ranging":[152],"from":[153,228],"biomedical":[154,233,267],"mining":[156,291,322],"web":[158,401,420,434],"services":[159,262,367,402,435],"workflows":[161,431],"construction":[164],"base":[168],"systems":[170,507],"pathology":[171],"mouse-related":[176,533],"data.":[177,534],"Most":[178],"available":[182],"sciences":[186],"stored":[189],"databases":[191],"but":[192],"scientific":[197,352],"publications.":[198],"amount":[200,231],"published":[203],"each":[204],"year":[205],"makes":[206],"it":[207],"extremely":[208],"difficult":[209,438],"results.":[216],"importance":[218],"being":[220],"able":[221],"extract":[225],"relevant":[226],"three":[238],"which":[240],"topic.":[246,391],"these":[250,461],"contributed":[253],"Jung-jae":[255],"Kim":[256],"et":[257,395,488],"al.":[258,396,489],"reviews":[260],"online":[261,379],"seeking":[264],"information":[265],"facilitate":[270],"improvements":[271],"practice.":[273],"After":[274],"that,":[275,510],"Rainer":[276],"Winnenburg":[277],"colleagues":[279,425,514],"give":[280,315],"overview":[282,543],"state":[285,442],"art":[288,445],"text":[290],"discuss":[293,411],"combination":[295],"such":[297],"approaches":[298,399],"with":[299,358,418,473],"manual":[300],"curation":[301,451],"efforts":[302],"annotation":[304],"projects.":[305],"third":[308],"article,":[309],"Pankaj":[310],"Agarwal":[311],"David":[313],"Searls":[314],"industrial":[317],"perspective":[318],"how":[320],"used":[324],"support":[326],"drug":[327],"discovery.":[328],"amounts":[331],"that":[334,428],"now":[336],"produced":[337],"daily":[340],"basis,":[341],"as":[342,344,347,454,492,503,554,556,573,575],"well":[343,555,574],"Internet":[346],"modern":[349],"infrastructure":[350],"exchange,":[353],"have":[354,368],"created":[355],"demands":[357],"respect":[359],"accessibility":[362],"recent":[364],"years.":[365],"Web":[366],"become":[369],"very":[371,602],"important":[372,603],"technique":[373],"programmatic":[376],"access":[377],"tools.":[382],"This":[383],"includes":[386],"two":[387,465],"about":[389,596],"First":[392],"Heinz":[393],"Stockinger":[394],"survey":[397],"popular":[398],"context":[405],"biological":[407],"sequence":[408],"analysis":[409],"syntactic":[412],"semantic":[414],"issues":[417],"multiple":[419],"services.":[421],"Carol":[422],"Goble":[423],"then":[426],"argue":[427],"based":[432],"can":[436],"be":[437],"use.":[440],"current":[447,545],"challenges":[448],"process":[450],"described":[453],"step":[456],"towards":[457],"solution":[459],"problems.":[462],"final":[464],"contributions":[466],"concerned":[472],"techniques":[476],"specific":[483,561],"application":[484,562],"areas.":[485,563],"Michael":[486],"Holger":[487],"use":[490],"diabetes":[491],"example":[494],"strategies":[497],"developing":[499],"computer-accessible":[500],"sources":[502],"foundation":[505],"pathology.":[508],"Following":[509],"Damian":[511],"Smedley":[512],"critically":[515],"assess":[516],"solutions":[517],"functional":[522],"genomics":[523],"describe":[525],"case":[527],"study":[528],"summary,":[536],"gives":[540],"good":[542],"trends":[546],"detailed":[557],"insights":[558],"into":[559],"some":[560],"Given":[564],"lack":[566],"(properly":[568],"used)":[569],"standards":[570],"procedures":[572],"abundance":[577],"formats,":[582],"presented":[584],"valuable":[587],"assets":[588],"enable":[590],"reader":[592],"stay":[594],"informed":[595],"developments":[599],"bioinformatics.":[606]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
