{"id":"https://openalex.org/W2161073021","doi":"https://doi.org/10.1093/bib/bbn041","title":"Bringing Web 2.0 to bioinformatics","display_name":"Bringing Web 2.0 to bioinformatics","publication_year":2008,"publication_date":"2008-10-08","ids":{"openalex":"https://openalex.org/W2161073021","doi":"https://doi.org/10.1093/bib/bbn041","mag":"2161073021","pmid":"https://pubmed.ncbi.nlm.nih.gov/18842678"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn041","pdf_url":"https://academic.oup.com/bib/article-pdf/10/1/1/616354/bbn041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/10/1/1/616354/bbn041.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100599306","display_name":"Zhang Zhang","orcid":"https://orcid.org/0000-0001-6603-5060"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Z. Zhang","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110209950","display_name":"Kei\u2010Hoi Cheung","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K.-H. Cheung","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5089803222","display_name":"Jeffrey P. Townsend","orcid":"https://orcid.org/0000-0002-9890-3907"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. P. Townsend","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100599306"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":19.3552,"has_fulltext":false,"cited_by_count":99,"citation_normalized_percentile":{"value":0.99040173,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9718999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7194405794143677},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5991445779800415},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5836448669433594},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5610062479972839},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5573945641517639},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.509774386882782},{"id":"https://openalex.org/keywords/collective-intelligence","display_name":"Collective intelligence","score":0.47001078724861145},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.45114442706108093},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.4314311742782593},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.42343777418136597},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1648479402065277}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7194405794143677},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5991445779800415},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5836448669433594},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5610062479972839},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5573945641517639},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.509774386882782},{"id":"https://openalex.org/C89057211","wikidata":"https://www.wikidata.org/wiki/Q432197","display_name":"Collective intelligence","level":2,"score":0.47001078724861145},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.45114442706108093},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.4314311742782593},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.42343777418136597},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1648479402065277},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbn041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn041","pdf_url":"https://academic.oup.com/bib/article-pdf/10/1/1/616354/bbn041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18842678","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18842678","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:1941267","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2638627","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbn041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn041","pdf_url":"https://academic.oup.com/bib/article-pdf/10/1/1/616354/bbn041.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161073021.pdf","grobid_xml":"https://content.openalex.org/works/W2161073021.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W182745451","https://openalex.org/W1485656671","https://openalex.org/W1528535511","https://openalex.org/W1646048262","https://openalex.org/W1649804825","https://openalex.org/W1664954303","https://openalex.org/W1819037663","https://openalex.org/W1835571316","https://openalex.org/W1886337131","https://openalex.org/W1965232304","https://openalex.org/W1965944630","https://openalex.org/W1971676632","https://openalex.org/W1983594585","https://openalex.org/W1988431525","https://openalex.org/W1996591641","https://openalex.org/W1996902131","https://openalex.org/W2001653627","https://openalex.org/W2002190525","https://openalex.org/W2002690451","https://openalex.org/W2004176454","https://openalex.org/W2004562085","https://openalex.org/W2020343713","https://openalex.org/W2035528219","https://openalex.org/W2046153143","https://openalex.org/W2050028106","https://openalex.org/W2063007776","https://openalex.org/W2067975843","https://openalex.org/W2070178957","https://openalex.org/W2072229457","https://openalex.org/W2076327529","https://openalex.org/W2087157049","https://openalex.org/W2102789902","https://openalex.org/W2104959792","https://openalex.org/W2107523227","https://openalex.org/W2109615707","https://openalex.org/W2121588207","https://openalex.org/W2127186883","https://openalex.org/W2132586689","https://openalex.org/W2133630884","https://openalex.org/W2136465047","https://openalex.org/W2136539307","https://openalex.org/W2137653635","https://openalex.org/W2139211192","https://openalex.org/W2150424267","https://openalex.org/W2150934173","https://openalex.org/W2152183418","https://openalex.org/W2156206665","https://openalex.org/W2156877380","https://openalex.org/W2158304452","https://openalex.org/W2158714788","https://openalex.org/W2161850605","https://openalex.org/W2163040665","https://openalex.org/W2167755128","https://openalex.org/W2169826929","https://openalex.org/W2170185828","https://openalex.org/W2174359540","https://openalex.org/W2913475909","https://openalex.org/W4237174370","https://openalex.org/W4247085079","https://openalex.org/W4248342007","https://openalex.org/W4256504777"],"related_works":["https://openalex.org/W2099525665","https://openalex.org/W2373884155","https://openalex.org/W4200307027","https://openalex.org/W2384379346","https://openalex.org/W2369660510","https://openalex.org/W2388570076","https://openalex.org/W2364093074","https://openalex.org/W2284149529","https://openalex.org/W2377255402","https://openalex.org/W2031999958"],"abstract_inverted_index":{"Enabling":[0],"deft":[1],"data":[2,9,26,40,57,67,117,133,144],"integration":[3,38,145],"from":[4,41,195],"numerous,":[5],"voluminous":[6],"and":[7,28,46,59,88,113,120,146,152,156,164,170,206],"heterogeneous":[8],"sources":[10,43],"is":[11],"a":[12,52,63,94,110,124],"major":[13],"bioinformatic":[14],"challenge.":[15],"Several":[16],"approaches":[17,50],"have":[18],"been":[19],"proposed":[20],"to":[21,84,142,148,153,168,176],"address":[22],"this":[23,74,86],"challenge,":[24],"including":[25],"warehousing":[27],"federated":[29],"databasing.":[30],"Yet":[31],"despite":[32],"the":[33,78,103,199,212],"rise":[34],"of":[35,39,66,80,105,158,202,214],"these":[36,106],"approaches,":[37],"multiple":[42],"remains":[44],"problematic":[45],"toilsome.":[47],"These":[48],"two":[49],"follow":[51],"user-to-computer":[53],"communication":[54],"model":[55,87,101],"for":[56,102,116,131],"exchange,":[58],"do":[60],"not":[61],"facilitate":[62,154],"broader":[64],"concept":[65],"sharing":[68,119,157],"or":[69],"collaboration":[70,163],"among":[71],"users.":[72],"In":[73,174],"report,":[75],"we":[76,122,180],"discuss":[77,193],"potential":[79,184,209],"Web":[81,95,203],"2.0":[82],"technologies":[83],"transcend":[85],"enhance":[89],"bioinformatics":[90,215],"research.":[91],"We":[92,192],"propose":[93],"2.0-based":[96],"Scientific":[97],"Social":[98],"Community":[99],"(SSC)":[100],"implementation":[104],"technologies.":[107],"By":[108],"establishing":[109],"social,":[111],"collective":[112,166],"collaborative":[114],"platform":[115,189],"creation,":[118,147],"integration,":[121],"promote":[123],"web":[125,129],"services-based":[126],"pipeline":[127,140],"featuring":[128],"services":[130],"computer-to-computer":[132],"exchange":[134],"as":[135,186],"users":[136],"add":[137],"value.":[138],"This":[139],"aims":[141],"simplify":[143],"realize":[149],"automatic":[150],"analysis,":[151],"reuse":[155],"data.":[159],"SSC":[160],"can":[161],"foster":[162],"harness":[165],"intelligence":[167],"create":[169],"discover":[171],"new":[172],"knowledge.":[173],"addition":[175],"its":[177,183,208],"research":[178],"potential,":[179],"also":[181],"describe":[182,207],"role":[185],"an":[187],"e-learning":[188],"in":[190],"education.":[191],"lessons":[194],"information":[196],"technology,":[197],"predict":[198],"next":[200],"generation":[201],"(Web":[204],"3.0),":[205],"impact":[210],"on":[211],"future":[213],"studies.":[216]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
