{"id":"https://openalex.org/W2119748718","doi":"https://doi.org/10.1093/bib/bbn040","title":"Solutions for data integration in functional genomics: a critical assessment and case study","display_name":"Solutions for data integration in functional genomics: a critical assessment and case study","publication_year":2008,"publication_date":"2008-07-11","ids":{"openalex":"https://openalex.org/W2119748718","doi":"https://doi.org/10.1093/bib/bbn040","mag":"2119748718","pmid":"https://pubmed.ncbi.nlm.nih.gov/19112082"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn040","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009950897","display_name":"Damian Smedley","orcid":"https://orcid.org/0000-0002-5836-9850"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. Smedley","raw_affiliation_strings":["European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. damian@ebi.ac.uk","European Bioinformat Inst, Wellcome Trust Sanger Institute, Prot & Nucleotide Database Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. damian@ebi.ac.uk","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformat Inst, Wellcome Trust Sanger Institute, Prot & Nucleotide Database Group","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","NL"],"is_corresponding":false,"raw_author_name":"M. A. Swertz","raw_affiliation_strings":["Morris Swertz is currently developing the MOLGENIS system at the Groningen Bioinformatics Centre at the University of Groningen","Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Morris Swertz is currently developing the MOLGENIS system at the Groningen Bioinformatics Centre at the University of Groningen","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Bioinformatics","institution_ids":["https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210096829","display_name":"Technology Applications Group (United States)","ror":"https://ror.org/00vdc9c89","country_code":"US","type":"company","lineage":["https://openalex.org/I4210096829"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"K. Wolstencroft","raw_affiliation_strings":["Katy Wolstencroft is part of the myGrid group at the University of Manchester, developing Taverna amongst other applications","Univ Manchester, University of Manchester, myGrid Grp"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Katy Wolstencroft is part of the myGrid group at the University of Manchester, developing Taverna amongst other applications","institution_ids":["https://openalex.org/I4210096829"]},{"raw_affiliation_string":"Univ Manchester, University of Manchester, myGrid Grp","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109467778","display_name":"Glenn Proctor","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. Proctor","raw_affiliation_strings":["European Bioinformat Inst, Wellcome Trust Sanger Institute, Prot & Nucleotide Database Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformat Inst, Wellcome Trust Sanger Institute, Prot & Nucleotide Database Group","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046058680","display_name":"M. Zouberakis","orcid":null},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"M. Zouberakis","raw_affiliation_strings":["Michael Zouberakis is part of the Database Developing Team at the Alexander Fleming Biomedical Sciences Research Center in Athens","Alexander Fleming Biomed Sci Res Ctr, Database Developing Team"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michael Zouberakis is part of the Database Developing Team at the Alexander Fleming Biomedical Sciences Research Center in Athens","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Alexander Fleming Biomed Sci Res Ctr, Database Developing Team","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041987387","display_name":"Jonathan Bard","orcid":"https://orcid.org/0000-0002-4422-9726"},"institutions":[{"id":"https://openalex.org/I124261462","display_name":"Oxford Brookes University","ror":"https://ror.org/04v2twj65","country_code":"GB","type":"education","lineage":["https://openalex.org/I124261462"]},{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Bard","raw_affiliation_strings":["Jonathan Bard 's research in the Computational Biology Research Group, John Radcliffe Hospital, Oxford is focussed on the development of biomedical ontologies, especially those for anatomy","John Radcliffe Hosp, Oxford Brookes University, University of Oxford, Computat Biol Res Grp"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jonathan Bard 's research in the Computational Biology Research Group, John Radcliffe Hospital, Oxford is focussed on the development of biomedical ontologies, especially those for anatomy","institution_ids":["https://openalex.org/I2802742124"]},{"raw_affiliation_string":"John Radcliffe Hosp, Oxford Brookes University, University of Oxford, Computat Biol Res Grp","institution_ids":["https://openalex.org/I124261462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030731998","display_name":"John M. Hancock","orcid":"https://orcid.org/0000-0003-2991-2217"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. M. Hancock","raw_affiliation_strings":["John Hancock heads the Bioinformatics group at the MRC Harwell centre for mouse genetics","MRC Harwell Ctr Mouse Genet, Bioinformat Grp"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"John Hancock heads the Bioinformatics group at the MRC Harwell centre for mouse genetics","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell Ctr Mouse Genet, Bioinformat Grp","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801987317","display_name":"VA Office of Research and Development","ror":"https://ror.org/011qyt180","country_code":"US","type":"government","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I2801987317"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"P. Schofield","raw_affiliation_strings":["Paul Schofield 's team at the Department of Physiology, Development and Neuroscience, University of Cambridge develops the Pathbase mouse mutant pathology database as well as other research activities","Univ Cambridge, University of Cambridge, Dept Physiol Dev & Neurosci"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paul Schofield 's team at the Department of Physiology, Development and Neuroscience, University of Cambridge develops the Pathbase mouse mutant pathology database as well as other research activities","institution_ids":["https://openalex.org/I2801987317"]},{"raw_affiliation_string":"Univ Cambridge, University of Cambridge, Dept Physiol Dev & Neurosci","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0837,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.86831233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"9","issue":"6","first_page":"532","last_page":"544"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.8191243410110474},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7276551723480225},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6572815179824829},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.6206108331680298},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.609043538570404},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5841745734214783},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5734187960624695},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5525797605514526},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5025205612182617},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5018534660339355},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4200451672077179},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27951034903526306},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24779343605041504},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1784992516040802},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16138023138046265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1539212465286255},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1187204122543335},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10187342762947083}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.8191243410110474},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7276551723480225},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6572815179824829},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.6206108331680298},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.609043538570404},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5841745734214783},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5734187960624695},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5525797605514526},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5025205612182617},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5018534660339355},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4200451672077179},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27951034903526306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24779343605041504},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1784992516040802},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16138023138046265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1539212465286255},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1187204122543335},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10187342762947083},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbn040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbn040","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19112082","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19112082","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/19e96a6c-fb7a-426c-b6b9-8fb57273ffe1","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/19e96a6c-fb7a-426c-b6b9-8fb57273ffe1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Smedley, D, Swertz, M A, Wolstencroft, K, Proctor, G, Zouberakis, M, Bard, J, Hancock, J M & Schofield, P 2008, 'Solutions for data integration in functional genomics: A critical assessment and case study', Briefings in Bioinformatics, vol. 9, no. 6, pp. 532-544. https://doi.org/10.1093/bib/bbn040","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/152983c8-8cde-407f-820e-14a2ba9f3564","is_oa":false,"landing_page_url":"https://research.rug.nl/en/publications/152983c8-8cde-407f-820e-14a2ba9f3564","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Smedley, D, Swertz, M A, Wolstencroft, K, Proctor, G, Zouberakis, M, Bard, J, Hancock, J M & Schofield, P 2008, 'Solutions for data integration in functional genomics : A critical assessment and case study', Briefings in Bioinformatics, vol. 9, no. 6, pp. 532-544. https://doi.org/10.1093/bib/bbn040","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W76145344","https://openalex.org/W852643139","https://openalex.org/W1481428050","https://openalex.org/W1500385977","https://openalex.org/W1515432244","https://openalex.org/W1578304052","https://openalex.org/W1603776115","https://openalex.org/W1649804825","https://openalex.org/W1970740951","https://openalex.org/W1995363983","https://openalex.org/W1996423252","https://openalex.org/W1996902131","https://openalex.org/W2017994420","https://openalex.org/W2054251921","https://openalex.org/W2061561206","https://openalex.org/W2064623977","https://openalex.org/W2066003039","https://openalex.org/W2071286514","https://openalex.org/W2074984352","https://openalex.org/W2113758252","https://openalex.org/W2117062422","https://openalex.org/W2123060905","https://openalex.org/W2130743074","https://openalex.org/W2133445706","https://openalex.org/W2137653635","https://openalex.org/W2146453000","https://openalex.org/W2148032748","https://openalex.org/W2158304452","https://openalex.org/W2160697532","https://openalex.org/W2161645441","https://openalex.org/W2169826929","https://openalex.org/W2172159256","https://openalex.org/W2181040457","https://openalex.org/W2492495584","https://openalex.org/W2912573708","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4255885845"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4388126069","https://openalex.org/W2567393658","https://openalex.org/W3200944274","https://openalex.org/W4390080500","https://openalex.org/W4210478786","https://openalex.org/W1986750556","https://openalex.org/W2126676706","https://openalex.org/W3211546111"],"abstract_inverted_index":{"The":[0,50],"torrent":[1],"of":[2,8,26,48,73,78,83,98,113,122,125],"data":[3,27,35,65,74,126,172,212],"emerging":[4],"from":[5,75],"the":[6,23,32,57,81,86,108,119,123,137,152,218],"application":[7],"new":[9],"technologies":[10,153,210],"to":[11,106,145,158,170,191,221,232],"functional":[12,130,147],"genomics":[13],"and":[14,29,42,67,96,110,149,177,208,230],"systems":[15],"biology":[16],"can":[17,155],"no":[18],"longer":[19],"be":[20,156],"contained":[21],"within":[22],"traditional":[24],"modes":[25],"sharing":[28],"publication":[30],"with":[31,103,140,142],"consequence":[33],"that":[34,70,116,154],"is":[36],"being":[37],"deposited":[38],"in,":[39],"distributed":[40],"across":[41],"disseminated":[43],"through":[44],"an":[45,167,193,197,224],"increasing":[46],"number":[47],"databases.":[49],"resulting":[51],"fragmentation":[52],"poses":[53],"serious":[54],"problems":[55,139],"for":[56,181,211],"model":[58],"organism":[59],"community":[60],"which":[61],"increasingly":[62],"rely":[63],"on":[64,173,190,217],"mining":[66],"computational":[68],"approaches":[69],"require":[71],"gathering":[72],"a":[76,91,104,163,185,227],"range":[77],"sources.":[79],"In":[80,132],"light":[82],"these":[84],"problems,":[85],"European":[87],"Commission":[88],"has":[89],"funded":[90],"coordination":[92],"action,":[93],"CASIMIR":[94],"(coordination":[95],"sustainability":[97],"international":[99],"mouse":[100,129,146],"informatics":[101],"resources),":[102],"remit":[105],"assess":[107,136],"technical":[109],"social":[111],"aspects":[112],"database":[114],"interoperability":[115],"currently":[117],"prevent":[118],"full":[120],"realization":[121],"potential":[124],"integration":[127],"in":[128,184,198,226],"genomics.":[131],"this":[133],"article,":[134],"we":[135,215],"current":[138,219],"interoperability,":[141],"particular":[143],"reference":[144],"genomics,":[148],"critically":[150],"review":[151],"deployed":[157],"overcome":[159,233],"them.":[160,234],"We":[161,188],"describe":[162],"typical":[164],"use-case":[165],"where":[166],"investigator":[168],"wishes":[169],"gather":[171],"variation,":[174],"genomic":[175],"context":[176],"metabolic":[178],"pathway":[179],"involvement":[180],"genes":[182],"discovered":[183],"genome-wide":[186],"screen.":[187],"go":[189],"develop":[192],"automated":[194],"approach":[195,225],"involving":[196],"silico":[199],"experimental":[200],"workflow":[201],"tool,":[202],"Taverna,":[203],"using":[204],"web":[205],"services,":[206],"BioMart":[207],"MOLGENIS":[209],"retrieval.":[213],"Finally,":[214],"focus":[216],"impediments":[220],"adopting":[222],"such":[223],"wider":[228],"context,":[229],"strategies":[231]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}
