{"id":"https://openalex.org/W2061674320","doi":"https://doi.org/10.1093/bib/bbn016","title":"The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation","display_name":"The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation","publication_year":2008,"publication_date":"2008-03-27","ids":{"openalex":"https://openalex.org/W2061674320","doi":"https://doi.org/10.1093/bib/bbn016","mag":"2061674320","pmid":"https://pubmed.ncbi.nlm.nih.gov/18436575"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbn016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn016","pdf_url":"https://academic.oup.com/bib/article-pdf/9/4/326/742021/bbn016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/9/4/326/742021/bbn016.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029172959","display_name":"Edgar Wingender","orcid":"https://orcid.org/0000-0002-7729-8453"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"E. Wingender","raw_affiliation_strings":["Department of Bioinformatics, Medical School, University of G\u00f6ttingen, Goldschmidtstr. 1, D-37077 G\u00f6ttingen, Germany. e.wingender@med.uni-goettingen.de","Department of Bioinformatics, Medical School, University of G\u00f6ttingen, Goldschmidtstr. 1, D-37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Medical School, University of G\u00f6ttingen, Goldschmidtstr. 1, D-37077 G\u00f6ttingen, Germany. e.wingender@med.uni-goettingen.de","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Department of Bioinformatics, Medical School, University of G\u00f6ttingen, Goldschmidtstr. 1, D-37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210116730","https://openalex.org/I74656192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5029172959"],"corresponding_institution_ids":["https://openalex.org/I4210116730","https://openalex.org/I74656192"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":15.3563,"has_fulltext":true,"cited_by_count":455,"citation_normalized_percentile":{"value":0.99253592,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"9","issue":"4","first_page":"326","last_page":"332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11501","display_name":"TGF-\u03b2 signaling in diseases","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5452284812927246},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5397684574127197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5117182731628418},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43737921118736267},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4169199764728546},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.41133415699005127},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3308572769165039},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24391812086105347}],"concepts":[{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5452284812927246},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5397684574127197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5117182731628418},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43737921118736267},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4169199764728546},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.41133415699005127},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3308572769165039},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24391812086105347}],"mesh":[{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbn016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn016","pdf_url":"https://academic.oup.com/bib/article-pdf/9/4/326/742021/bbn016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18436575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18436575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:goescholar:1/6095","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/6095","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/53851","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gs-1/6095","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbn016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbn016","pdf_url":"https://academic.oup.com/bib/article-pdf/9/4/326/742021/bbn016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2061674320.pdf","grobid_xml":"https://content.openalex.org/works/W2061674320.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W9396432","https://openalex.org/W1220850065","https://openalex.org/W1527927437","https://openalex.org/W1586233861","https://openalex.org/W1600033471","https://openalex.org/W1970175473","https://openalex.org/W1971290810","https://openalex.org/W1985286473","https://openalex.org/W1989238880","https://openalex.org/W1990659515","https://openalex.org/W1997144871","https://openalex.org/W2005695308","https://openalex.org/W2013739996","https://openalex.org/W2025665146","https://openalex.org/W2032019900","https://openalex.org/W2035908878","https://openalex.org/W2055016234","https://openalex.org/W2059325872","https://openalex.org/W2064879068","https://openalex.org/W2066992853","https://openalex.org/W2069328936","https://openalex.org/W2072775378","https://openalex.org/W2074033424","https://openalex.org/W2074644609","https://openalex.org/W2078095350","https://openalex.org/W2090730621","https://openalex.org/W2094036688","https://openalex.org/W2100651362","https://openalex.org/W2104864984","https://openalex.org/W2108011868","https://openalex.org/W2109745408","https://openalex.org/W2110403456","https://openalex.org/W2111365614","https://openalex.org/W2115243299","https://openalex.org/W2134245756","https://openalex.org/W2134515324","https://openalex.org/W2135030836","https://openalex.org/W2135243774","https://openalex.org/W2135353523","https://openalex.org/W2141055794","https://openalex.org/W2146526187","https://openalex.org/W2149848115","https://openalex.org/W2151625863","https://openalex.org/W2151945801","https://openalex.org/W2155093342","https://openalex.org/W2157169551","https://openalex.org/W2160829210","https://openalex.org/W2161390567","https://openalex.org/W2161566669","https://openalex.org/W2161600258","https://openalex.org/W2165604360","https://openalex.org/W2168655003","https://openalex.org/W2169927604","https://openalex.org/W2170628952","https://openalex.org/W2247766769","https://openalex.org/W2916147039","https://openalex.org/W6635257538","https://openalex.org/W6676103729","https://openalex.org/W6683133466","https://openalex.org/W7073646252","https://openalex.org/W7073759378","https://openalex.org/W7073813772"],"related_works":["https://openalex.org/W2131250617","https://openalex.org/W2057769265","https://openalex.org/W4233034052","https://openalex.org/W2371030422","https://openalex.org/W2155261113","https://openalex.org/W4366601060","https://openalex.org/W5284979","https://openalex.org/W4245853730","https://openalex.org/W2115260093","https://openalex.org/W2125870006"],"abstract_inverted_index":{"Since":[0],"its":[1],"beginning":[2],"as":[3],"a":[4,23],"data":[5],"collection":[6],"more":[7],"than":[8],"20":[9],"years":[10],"ago,":[11],"the":[12,20,27,38,43],"TRANSFAC":[13],"project":[14],"underwent":[15],"an":[16],"evolution":[17],"to":[18,58,60],"become":[19],"basis":[21],"for":[22,26],"complex":[24],"platform":[25],"description":[28],"and":[29,35,52],"analysis":[30],"of":[31],"gene":[32],"regulatory":[33],"events":[34],"networks.":[36],"In":[37],"following,":[39],"I":[40],"describe":[41],"what":[42,47],"original":[44],"concepts":[45],"were,":[46],"their":[48],"present":[49],"status":[50],"is":[51],"how":[53],"they":[54],"may":[55],"be":[56],"expected":[57],"contribute":[59],"future":[61],"system":[62],"biology":[63],"approaches.":[64]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":39},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":31},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":24},{"year":2015,"cited_by_count":34},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":41},{"year":2012,"cited_by_count":39}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
