{"id":"https://openalex.org/W2162348425","doi":"https://doi.org/10.1093/bib/bbm047","title":"Informatics in neuroscience","display_name":"Informatics in neuroscience","publication_year":2007,"publication_date":"2007-05-04","ids":{"openalex":"https://openalex.org/W2162348425","doi":"https://doi.org/10.1093/bib/bbm047","mag":"2162348425","pmid":"https://pubmed.ncbi.nlm.nih.gov/17932081"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm047","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbm047","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074657982","display_name":"Leon French","orcid":"https://orcid.org/0000-0002-9409-4583"},"institutions":[{"id":"https://openalex.org/I1287378978","display_name":"University of British Columbia Hospital","ror":"https://ror.org/00frst980","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1287378978","https://openalex.org/I141074466","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I2799475292"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"L. French","raw_affiliation_strings":["UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall, University of British Columbia, Vancouver BC V6T1Z4, Canada","UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall,","University of British Columbia, Vancouver BC V6T1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall, University of British Columbia, Vancouver BC V6T1Z4, Canada","institution_ids":["https://openalex.org/I4210133112","https://openalex.org/I1287378978"]},{"raw_affiliation_string":"UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall,","institution_ids":[]},{"raw_affiliation_string":"University of British Columbia, Vancouver BC V6T1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012991069","display_name":"Paul Pavlidis","orcid":"https://orcid.org/0000-0002-0426-5028"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"P. Pavlidis","raw_affiliation_strings":["University of British Columbia, Vancouver BC V6T1Z4, Canada","UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall,"],"affiliations":[{"raw_affiliation_string":"University of British Columbia, Vancouver BC V6T1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"UBC Bioinformatics Centre (UBiC), 177, Michael Smith Laboratories, 2185 East Mall,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074657982"],"corresponding_institution_ids":["https://openalex.org/I1287378978","https://openalex.org/I141945490","https://openalex.org/I4210133112"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.5377,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.66770262,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"6","first_page":"446","last_page":"456"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9668999910354614,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.8009812831878662},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7814388275146484},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.7281472682952881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.634986400604248},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.567512035369873},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5303849577903748},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4758329391479492},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4450925588607788},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.4314480423927307},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.4183367192745209},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3172781467437744},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.20544219017028809},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1346358358860016},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10274043679237366},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.0765819251537323}],"concepts":[{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.8009812831878662},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7814388275146484},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.7281472682952881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.634986400604248},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.567512035369873},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5303849577903748},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4758329391479492},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4450925588607788},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4314480423927307},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.4183367192745209},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3172781467437744},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.20544219017028809},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1346358358860016},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10274043679237366},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0765819251537323},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009419","descriptor_name":"Nerve Tissue Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbm047","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbm047","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17932081","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17932081","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.711.4921","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.711.4921","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.chibi.ubc.ca/wp-content/uploads/2013/11/informatics-in-neuroscience.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":90,"referenced_works":["https://openalex.org/W645920547","https://openalex.org/W1487060125","https://openalex.org/W1543637004","https://openalex.org/W1547158606","https://openalex.org/W1551190093","https://openalex.org/W1566743778","https://openalex.org/W1593057674","https://openalex.org/W1601867506","https://openalex.org/W1604195904","https://openalex.org/W1666305165","https://openalex.org/W1770716405","https://openalex.org/W1812228602","https://openalex.org/W1967759589","https://openalex.org/W1969202196","https://openalex.org/W1972878774","https://openalex.org/W1973233713","https://openalex.org/W1977541152","https://openalex.org/W1977918192","https://openalex.org/W1979654529","https://openalex.org/W1980904796","https://openalex.org/W1981221473","https://openalex.org/W1989271916","https://openalex.org/W1989394544","https://openalex.org/W1993597101","https://openalex.org/W1993673892","https://openalex.org/W1996181439","https://openalex.org/W2002688254","https://openalex.org/W2014141613","https://openalex.org/W2016445007","https://openalex.org/W2017400430","https://openalex.org/W2020070905","https://openalex.org/W2020307218","https://openalex.org/W2020541351","https://openalex.org/W2027132385","https://openalex.org/W2034339901","https://openalex.org/W2040711722","https://openalex.org/W2040898679","https://openalex.org/W2043679829","https://openalex.org/W2044291712","https://openalex.org/W2047514319","https://openalex.org/W2047784262","https://openalex.org/W2047999020","https://openalex.org/W2049742527","https://openalex.org/W2053673723","https://openalex.org/W2073045674","https://openalex.org/W2075654334","https://openalex.org/W2076903686","https://openalex.org/W2079987516","https://openalex.org/W2085887844","https://openalex.org/W2087058693","https://openalex.org/W2089925240","https://openalex.org/W2090892364","https://openalex.org/W2091819825","https://openalex.org/W2095294411","https://openalex.org/W2099792163","https://openalex.org/W2100871981","https://openalex.org/W2103017472","https://openalex.org/W2105452812","https://openalex.org/W2116136260","https://openalex.org/W2117632114","https://openalex.org/W2120259577","https://openalex.org/W2122174694","https://openalex.org/W2123491442","https://openalex.org/W2128762152","https://openalex.org/W2131631824","https://openalex.org/W2134038087","https://openalex.org/W2136245212","https://openalex.org/W2136539307","https://openalex.org/W2137231705","https://openalex.org/W2137999759","https://openalex.org/W2139483589","https://openalex.org/W2139664619","https://openalex.org/W2143129697","https://openalex.org/W2144764737","https://openalex.org/W2146232320","https://openalex.org/W2146693559","https://openalex.org/W2159254892","https://openalex.org/W2159386597","https://openalex.org/W2160938187","https://openalex.org/W2163815564","https://openalex.org/W2169756968","https://openalex.org/W2220690197","https://openalex.org/W2286812955","https://openalex.org/W2295970495","https://openalex.org/W2320423713","https://openalex.org/W2323792393","https://openalex.org/W2567184010","https://openalex.org/W2995052109","https://openalex.org/W3009920127","https://openalex.org/W4239548829"],"related_works":["https://openalex.org/W4206440575","https://openalex.org/W2086096185","https://openalex.org/W2918033089","https://openalex.org/W4383711048","https://openalex.org/W4382490869","https://openalex.org/W2162348425","https://openalex.org/W1455200286","https://openalex.org/W2164714185","https://openalex.org/W4210478786","https://openalex.org/W4367053695"],"abstract_inverted_index":{"The":[0,40],"application":[1],"of":[2,43,56,59],"informatics":[3,22],"to":[4,26,38,68],"neuroscience":[5],"goes":[6],"far":[7],"beyond":[8],"'traditional'":[9],"bioinformatics":[10],"modalities":[11],"such":[12],"as":[13],"DNA":[14],"sequences.":[15],"In":[16],"this":[17],"review,":[18],"we":[19],"describe":[20],"how":[21],"is":[23],"being":[24],"used":[25],"study":[27],"the":[28,57,64,70],"nervous":[29],"system":[30],"at":[31],"multiple":[32],"levels,":[33],"spanning":[34],"scales":[35],"from":[36],"molecules":[37],"behavior.":[39],"continuing":[41],"development":[42],"standards":[44],"for":[45],"data":[46,60],"exchange":[47],"and":[48,54],"interoperability,":[49],"together":[50],"with":[51],"increasing":[52],"awareness":[53],"acceptance":[55],"importance":[58],"sharing,":[61],"are":[62],"among":[63],"key":[65],"efforts":[66],"required":[67],"advance":[69],"field.":[71]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
