{"id":"https://openalex.org/W2099369363","doi":"https://doi.org/10.1093/bib/bbm045","title":"Frontiers of biomedical text mining: current progress","display_name":"Frontiers of biomedical text mining: current progress","publication_year":2007,"publication_date":"2007-06-20","ids":{"openalex":"https://openalex.org/W2099369363","doi":"https://doi.org/10.1093/bib/bbm045","mag":"2099369363","pmid":"https://pubmed.ncbi.nlm.nih.gov/17977867"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm045","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbm045","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2516302","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090195478","display_name":"Pierre Zweigenbaum","orcid":"https://orcid.org/0000-0001-8410-4808"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. Zweigenbaum","raw_affiliation_strings":["LIMSI-CNRS, BP 133, 91403 Orsay Cedex, France. pz@limsi.fr","LIMSI-CNRS, BP 133, 91403, Orsay cedex, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIMSI-CNRS, BP 133, 91403 Orsay Cedex, France. pz@limsi.fr","institution_ids":["https://openalex.org/I4210115485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIMSI-CNRS, BP 133, 91403, Orsay cedex, France#TAB#","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046764593","display_name":"Dina Demner\u2010Fushman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Demner-Fushman","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017601806","display_name":"Hong Yu","orcid":"https://orcid.org/0000-0001-9263-5035"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5054773374","display_name":"K. B. Cohen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. B. Cohen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":8.9269,"has_fulltext":false,"cited_by_count":284,"citation_normalized_percentile":{"value":0.98723026,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"8","issue":"5","first_page":"358","last_page":"375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9534000158309937,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.8594526052474976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7003765106201172},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6554532051086426},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6258794665336609},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6138421297073364},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.49083930253982544},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4158492982387543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3185184597969055},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.31210625171661377}],"concepts":[{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.8594526052474976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7003765106201172},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6554532051086426},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6258794665336609},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6138421297073364},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.49083930253982544},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4158492982387543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3185184597969055},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.31210625171661377},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbm045","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbm045","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17977867","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17977867","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2516302","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2516302","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2516302","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2516302","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.550000011920929,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G2225705156","display_name":null,"funder_award_id":"1G08LM009639-01","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G2998884177","display_name":null,"funder_award_id":"R01-LM009836-01A1","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3564336810","display_name":null,"funder_award_id":"G08 LM009639","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4943920929","display_name":null,"funder_award_id":"R01 LM009836","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5169022270","display_name":null,"funder_award_id":"R01 LM008111","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G817058178","display_name":null,"funder_award_id":"5R01 LM008111-03","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":138,"referenced_works":["https://openalex.org/W31203743","https://openalex.org/W49437421","https://openalex.org/W108101778","https://openalex.org/W108921306","https://openalex.org/W109663408","https://openalex.org/W139876133","https://openalex.org/W642409479","https://openalex.org/W1480287196","https://openalex.org/W1493949745","https://openalex.org/W1496662025","https://openalex.org/W1509877324","https://openalex.org/W1544224697","https://openalex.org/W1544826213","https://openalex.org/W1553529581","https://openalex.org/W1566012138","https://openalex.org/W1581900567","https://openalex.org/W1588755462","https://openalex.org/W1590192153","https://openalex.org/W1592053870","https://openalex.org/W1597409757","https://openalex.org/W1599615952","https://openalex.org/W1600005654","https://openalex.org/W1623698862","https://openalex.org/W1739940154","https://openalex.org/W1850865022","https://openalex.org/W1887198461","https://openalex.org/W1972618381","https://openalex.org/W1975509791","https://openalex.org/W1976316416","https://openalex.org/W1978241768","https://openalex.org/W1978570414","https://openalex.org/W1987281569","https://openalex.org/W1994306321","https://openalex.org/W1997307715","https://openalex.org/W2009433284","https://openalex.org/W2011726136","https://openalex.org/W2012350188","https://openalex.org/W2013507130","https://openalex.org/W2014362743","https://openalex.org/W2018261876","https://openalex.org/W2018740767","https://openalex.org/W2018874418","https://openalex.org/W2024159593","https://openalex.org/W2025209629","https://openalex.org/W2040424384","https://openalex.org/W2043099927","https://openalex.org/W2044420612","https://openalex.org/W2048501271","https://openalex.org/W2053562938","https://openalex.org/W2053673723","https://openalex.org/W2061166439","https://openalex.org/W2061430691","https://openalex.org/W2067994019","https://openalex.org/W2071221957","https://openalex.org/W2078875869","https://openalex.org/W2079672926","https://openalex.org/W2080007652","https://openalex.org/W2080902366","https://openalex.org/W2083472943","https://openalex.org/W2089639709","https://openalex.org/W2091803989","https://openalex.org/W2091898001","https://openalex.org/W2091978351","https://openalex.org/W2096082161","https://openalex.org/W2097106271","https://openalex.org/W2097960255","https://openalex.org/W2098201295","https://openalex.org/W2098382480","https://openalex.org/W2099369363","https://openalex.org/W2099696750","https://openalex.org/W2103397879","https://openalex.org/W2103427999","https://openalex.org/W2106121453","https://openalex.org/W2107909509","https://openalex.org/W2108574809","https://openalex.org/W2109368679","https://openalex.org/W2110279753","https://openalex.org/W2111499750","https://openalex.org/W2113202266","https://openalex.org/W2113374855","https://openalex.org/W2113625351","https://openalex.org/W2115007282","https://openalex.org/W2116131036","https://openalex.org/W2118002992","https://openalex.org/W2119585834","https://openalex.org/W2121545956","https://openalex.org/W2122139846","https://openalex.org/W2123112337","https://openalex.org/W2124617249","https://openalex.org/W2124973181","https://openalex.org/W2125160887","https://openalex.org/W2125848394","https://openalex.org/W2126276057","https://openalex.org/W2128313783","https://openalex.org/W2131449610","https://openalex.org/W2132781587","https://openalex.org/W2133294519","https://openalex.org/W2133525847","https://openalex.org/W2133615853","https://openalex.org/W2134568263","https://openalex.org/W2135127217","https://openalex.org/W2137209653","https://openalex.org/W2140097020","https://openalex.org/W2141869602","https://openalex.org/W2144949988","https://openalex.org/W2147411155","https://openalex.org/W2148130205","https://openalex.org/W2148282068","https://openalex.org/W2149043723","https://openalex.org/W2151296343","https://openalex.org/W2152881983","https://openalex.org/W2155744163","https://openalex.org/W2158040974","https://openalex.org/W2158300770","https://openalex.org/W2158789585","https://openalex.org/W2159053585","https://openalex.org/W2159335058","https://openalex.org/W2161299591","https://openalex.org/W2162629891","https://openalex.org/W2163107094","https://openalex.org/W2163352173","https://openalex.org/W2164173383","https://openalex.org/W2168598710","https://openalex.org/W2168905447","https://openalex.org/W2169296994","https://openalex.org/W2170833518","https://openalex.org/W2397559072","https://openalex.org/W2484457412","https://openalex.org/W2525607409","https://openalex.org/W2758584545","https://openalex.org/W2788615383","https://openalex.org/W2791276966","https://openalex.org/W2792952625","https://openalex.org/W2799321649","https://openalex.org/W2912204212","https://openalex.org/W2917056928","https://openalex.org/W2917293077","https://openalex.org/W2998386552"],"related_works":["https://openalex.org/W3185751515","https://openalex.org/W1479703980","https://openalex.org/W2749535755","https://openalex.org/W1553529581","https://openalex.org/W4206039273","https://openalex.org/W4232119327","https://openalex.org/W2911489562","https://openalex.org/W2134429551","https://openalex.org/W3183808544","https://openalex.org/W2188854577"],"abstract_inverted_index":{"It":[0],"is":[1],"now":[2],"almost":[3],"15":[4],"years":[5],"since":[6,22],"the":[7,10,17,23,30,39,82,106,110,126],"publication":[8],"of":[9,41,65,79,84,109],"first":[11,24],"paper":[12,25],"on":[13,26,122],"text":[14,27,86,114],"mining":[15,28,87,115],"in":[16,29,38,68,112,118],"genomics":[18],"domain,":[19],"and":[20,46,60,93,98],"decades":[21],"medical":[31],"domain.":[32],"Enormous":[33],"progress":[34],"has":[35],"been":[36],"made":[37],"areas":[40],"information":[42],"retrieval,":[43],"evaluation":[44],"methodologies":[45],"resource":[47],"construction.":[48],"Some":[49],"problems,":[50,59],"such":[51,62],"as":[52,63],"abbreviation-handling,":[53],"can":[54],"essentially":[55],"be":[56,73],"considered":[57],"solved":[58,74],"others,":[61],"identification":[64],"gene":[66],"mentions":[67],"text,":[69],"seem":[70],"likely":[71],"to":[72,89],"soon.":[75],"However,":[76],"a":[77],"number":[78],"problems":[80],"at":[81],"frontiers":[83],"biomedical":[85,113],"continue":[88],"present":[90],"interesting":[91,99],"challenges":[92],"opportunities":[94],"for":[95],"great":[96],"improvements":[97],"research.":[100],"In":[101],"this":[102],"article":[103],"we":[104],"review":[105],"current":[107],"state":[108],"art":[111],"or":[116],"'BioNLP'":[117],"general,":[119],"focusing":[120],"primarily":[121],"papers":[123],"published":[124],"within":[125],"past":[127],"year.":[128]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":21},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":33}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
