{"id":"https://openalex.org/W2095763930","doi":"https://doi.org/10.1093/bib/bbm038","title":"Current progress in network research: toward reference networks for key model organisms","display_name":"Current progress in network research: toward reference networks for key model organisms","publication_year":2007,"publication_date":"2007-06-20","ids":{"openalex":"https://openalex.org/W2095763930","doi":"https://doi.org/10.1093/bib/bbm038","mag":"2095763930","pmid":"https://pubmed.ncbi.nlm.nih.gov/17728341"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm038","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/318/580096/bbm038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/8/5/318/580096/bbm038.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103541045","display_name":"Balasubrahmanyan Srinivasan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. S. Srinivasan","raw_affiliation_strings":["318 Campus Drive, Clark Center S251, Stanford, CA 94305, USA. balajis@stanford.edu","318 Campus Drive, Clark Center S251, Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"318 Campus Drive, Clark Center S251, Stanford, CA 94305, USA. balajis@stanford.edu","institution_ids":[]},{"raw_affiliation_string":"318 Campus Drive, Clark Center S251, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I4210137306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N. H. Shah","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011512882","display_name":"Jason Flannick","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. A. Flannick","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071958682","display_name":"Eduardo Abeliuk","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. Abeliuk","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082188730","display_name":"Ale\u0161 Novak","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. F. Novak","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5108224144","display_name":"Serafim Batzoglou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S. Batzoglou","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103541045"],"corresponding_institution_ids":["https://openalex.org/I4210137306"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7958,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.94186482,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"5","first_page":"318","last_page":"332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7576464414596558},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6076122522354126},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5493749976158142},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5234888792037964},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5135765075683594},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5026836395263672},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4990880489349365},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48315566778182983},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.46794524788856506},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4507928490638733},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.436921626329422},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.42469483613967896},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.4238147735595703},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.35223791003227234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2954089641571045},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.19202229380607605},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.16462334990501404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11570274829864502}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7576464414596558},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6076122522354126},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5493749976158142},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5234888792037964},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5135765075683594},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5026836395263672},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4990880489349365},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48315566778182983},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.46794524788856506},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4507928490638733},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.436921626329422},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.42469483613967896},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.4238147735595703},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.35223791003227234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2954089641571045},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.19202229380607605},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.16462334990501404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11570274829864502},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbm038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm038","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/318/580096/bbm038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17728341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17728341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbm038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm038","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/318/580096/bbm038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095763930.pdf","grobid_xml":"https://content.openalex.org/works/W2095763930.grobid-xml"},"referenced_works_count":143,"referenced_works":["https://openalex.org/W1480376833","https://openalex.org/W1489075871","https://openalex.org/W1499965417","https://openalex.org/W1518994209","https://openalex.org/W1527927437","https://openalex.org/W1536109649","https://openalex.org/W1577941315","https://openalex.org/W1599969036","https://openalex.org/W1637936532","https://openalex.org/W1644749979","https://openalex.org/W1677575702","https://openalex.org/W1788633327","https://openalex.org/W1946177469","https://openalex.org/W1947595544","https://openalex.org/W1967490380","https://openalex.org/W1969040600","https://openalex.org/W1970472404","https://openalex.org/W1976110793","https://openalex.org/W1978920477","https://openalex.org/W1980397590","https://openalex.org/W1982195171","https://openalex.org/W1982309495","https://openalex.org/W1985911638","https://openalex.org/W1993384523","https://openalex.org/W1995117714","https://openalex.org/W1996249120","https://openalex.org/W1997393168","https://openalex.org/W1999506179","https://openalex.org/W2004975621","https://openalex.org/W2006933206","https://openalex.org/W2007789333","https://openalex.org/W2009570821","https://openalex.org/W2009574796","https://openalex.org/W2010636476","https://openalex.org/W2012852001","https://openalex.org/W2014088797","https://openalex.org/W2018412008","https://openalex.org/W2021025020","https://openalex.org/W2029230311","https://openalex.org/W2030397967","https://openalex.org/W2030958510","https://openalex.org/W2032339615","https://openalex.org/W2042688172","https://openalex.org/W2046618236","https://openalex.org/W2050577542","https://openalex.org/W2050721857","https://openalex.org/W2055222883","https://openalex.org/W2055718828","https://openalex.org/W2057731521","https://openalex.org/W2057885377","https://openalex.org/W2062185406","https://openalex.org/W2063978378","https://openalex.org/W2069162648","https://openalex.org/W2070219149","https://openalex.org/W2071221957","https://openalex.org/W2073307618","https://openalex.org/W2073785087","https://openalex.org/W2081622831","https://openalex.org/W2088216962","https://openalex.org/W2096234478","https://openalex.org/W2096525273","https://openalex.org/W2099459260","https://openalex.org/W2099982459","https://openalex.org/W2100963023","https://openalex.org/W2100990314","https://openalex.org/W2102017611","https://openalex.org/W2103017472","https://openalex.org/W2103453943","https://openalex.org/W2104108767","https://openalex.org/W2106202847","https://openalex.org/W2106285921","https://openalex.org/W2109555487","https://openalex.org/W2111627817","https://openalex.org/W2111732181","https://openalex.org/W2112333437","https://openalex.org/W2113398700","https://openalex.org/W2114319457","https://openalex.org/W2116117181","https://openalex.org/W2119043225","https://openalex.org/W2119923823","https://openalex.org/W2120702690","https://openalex.org/W2121016876","https://openalex.org/W2121604817","https://openalex.org/W2122174694","https://openalex.org/W2123171788","https://openalex.org/W2124983445","https://openalex.org/W2126449841","https://openalex.org/W2127073167","https://openalex.org/W2127230663","https://openalex.org/W2128923603","https://openalex.org/W2131961145","https://openalex.org/W2132600317","https://openalex.org/W2133138357","https://openalex.org/W2133765683","https://openalex.org/W2135136744","https://openalex.org/W2135805255","https://openalex.org/W2136316164","https://openalex.org/W2136957665","https://openalex.org/W2137786672","https://openalex.org/W2139939149","https://openalex.org/W2140948740","https://openalex.org/W2141009231","https://openalex.org/W2142437744","https://openalex.org/W2142718629","https://openalex.org/W2143969914","https://openalex.org/W2145889895","https://openalex.org/W2147154551","https://openalex.org/W2147335610","https://openalex.org/W2148758061","https://openalex.org/W2149310258","https://openalex.org/W2149788324","https://openalex.org/W2150908245","https://openalex.org/W2151949149","https://openalex.org/W2152568394","https://openalex.org/W2154614685","https://openalex.org/W2155237411","https://openalex.org/W2156355974","https://openalex.org/W2156602393","https://openalex.org/W2156930958","https://openalex.org/W2156966633","https://openalex.org/W2157523980","https://openalex.org/W2158246396","https://openalex.org/W2159203162","https://openalex.org/W2159675211","https://openalex.org/W2160453515","https://openalex.org/W2160648174","https://openalex.org/W2162142896","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2164085997","https://openalex.org/W2164813401","https://openalex.org/W2165674132","https://openalex.org/W2167869241","https://openalex.org/W2168909179","https://openalex.org/W2169028134","https://openalex.org/W2171081680","https://openalex.org/W2171407623","https://openalex.org/W2247766769","https://openalex.org/W2462535150","https://openalex.org/W2543239452","https://openalex.org/W2916427899","https://openalex.org/W2916858871","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2100525485","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W2890725831","https://openalex.org/W3041939341"],"abstract_inverted_index":{"The":[0],"collection":[1],"of":[2,12,31,49,53,108,124,127],"multiple":[3],"genome-scale":[4],"datasets":[5,71],"is":[6,37],"now":[7],"routine,":[8],"and":[9,45,80,83,100,111],"the":[10,34,50,98,122],"frontier":[11],"research":[13],"in":[14,72],"systems":[15,120],"biology":[16],"has":[17],"shifted":[18],"accordingly.":[19],"Rather":[20],"than":[21],"clustering":[22],"a":[23,28,105,125],"single":[24],"dataset":[25],"to":[26,61,91],"produce":[27],"static":[29],"map":[30],"functional":[32,73],"modules,":[33],"focus":[35],"today":[36],"on":[38,87],"data":[39,78],"integration,":[40],"network":[41,81,89,109],"alignment,":[42,82],"interactive":[43],"visualization":[44],"ontological":[46],"markup.":[47],"Because":[48],"intrinsic":[51],"noisiness":[52],"high-throughput":[54],"measurements,":[55],"statistical":[56],"methods":[57,76],"have":[58],"been":[59],"central":[60],"this":[62,65],"effort.":[63],"In":[64],"review,":[66],"we":[67],"briefly":[68],"survey":[69],"available":[70],"genomics,":[74],"review":[75],"for":[77,119,131],"integration":[79,99],"describe":[84],"recent":[85],"work":[86],"using":[88],"models":[90],"guide":[92],"experimental":[93],"validation.":[94],"We":[95],"explain":[96],"how":[97],"validation":[101],"steps":[102],"spring":[103],"from":[104],"Bayesian":[106],"description":[107],"uncertainty,":[110],"conclude":[112],"by":[113],"describing":[114],"an":[115],"important":[116],"near-term":[117],"milestone":[118],"biology:":[121],"construction":[123],"set":[126],"rich":[128],"reference":[129],"networks":[130],"key":[132],"model":[133],"organisms.":[134]},"counts_by_year":[{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-02-24T19:35:01.260952","created_date":"2025-10-10T00:00:00"}
