{"id":"https://openalex.org/W1983624870","doi":"https://doi.org/10.1093/bib/bbm030","title":"Current Progress in computational metabolomics","display_name":"Current Progress in computational metabolomics","publication_year":2007,"publication_date":"2007-06-20","ids":{"openalex":"https://openalex.org/W1983624870","doi":"https://doi.org/10.1093/bib/bbm030","mag":"1983624870","pmid":"https://pubmed.ncbi.nlm.nih.gov/17626065"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm030","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/279/579275/bbm030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/8/5/279/579275/bbm030.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"D. S. Wishart","raw_affiliation_strings":["Department of Computing Science, Department of Biological Sciences and National Institute for Nanotechnology (NRC-NINT), University of Alberta, Edmonton Alberta, Canada T6G 2E8. david.wishart@ualberta.ca","Department of Computing Science, Department of Biological Sciences and National Institute for Nanotechnology (NRC-NINT), University of Alberta, Edmonton Alberta, Canada T6G 2E8"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, Department of Biological Sciences and National Institute for Nanotechnology (NRC-NINT), University of Alberta, Edmonton Alberta, Canada T6G 2E8. david.wishart@ualberta.ca","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"Department of Computing Science, Department of Biological Sciences and National Institute for Nanotechnology (NRC-NINT), University of Alberta, Edmonton Alberta, Canada T6G 2E8","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5003573061"],"corresponding_institution_ids":["https://openalex.org/I40752897"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.0343,"has_fulltext":true,"cited_by_count":225,"citation_normalized_percentile":{"value":0.94477665,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"8","issue":"5","first_page":"279","last_page":"293"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.9345945715904236},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.8472529053688049},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6477718353271484},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5924695134162903},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5625067353248596},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4802808463573456},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.355138897895813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23042234778404236},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2063399851322174},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19693762063980103},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08288955688476562}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.9345945715904236},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.8472529053688049},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6477718353271484},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5924695134162903},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5625067353248596},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4802808463573456},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.355138897895813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23042234778404236},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2063399851322174},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19693762063980103},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08288955688476562},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbm030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm030","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/279/579275/bbm030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17626065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17626065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbm030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm030","pdf_url":"https://academic.oup.com/bib/article-pdf/8/5/279/579275/bbm030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6499999761581421}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1983624870.pdf","grobid_xml":"https://content.openalex.org/works/W1983624870.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W56055795","https://openalex.org/W169227635","https://openalex.org/W1484003115","https://openalex.org/W1509900513","https://openalex.org/W1520392282","https://openalex.org/W1552301495","https://openalex.org/W1702681437","https://openalex.org/W1797956629","https://openalex.org/W1963861745","https://openalex.org/W1967225297","https://openalex.org/W1968817010","https://openalex.org/W1970440076","https://openalex.org/W1979565917","https://openalex.org/W1982465341","https://openalex.org/W1983230237","https://openalex.org/W1986275744","https://openalex.org/W1987622597","https://openalex.org/W1987778911","https://openalex.org/W1992990387","https://openalex.org/W1993216602","https://openalex.org/W1995974513","https://openalex.org/W1997734411","https://openalex.org/W2000482854","https://openalex.org/W2002405850","https://openalex.org/W2003770207","https://openalex.org/W2008656488","https://openalex.org/W2019544469","https://openalex.org/W2022705838","https://openalex.org/W2023508746","https://openalex.org/W2026054660","https://openalex.org/W2026089579","https://openalex.org/W2030121119","https://openalex.org/W2036373055","https://openalex.org/W2037028472","https://openalex.org/W2039513363","https://openalex.org/W2039638713","https://openalex.org/W2045074061","https://openalex.org/W2045478141","https://openalex.org/W2049602289","https://openalex.org/W2054004792","https://openalex.org/W2056281205","https://openalex.org/W2060559335","https://openalex.org/W2060952451","https://openalex.org/W2063219876","https://openalex.org/W2073612090","https://openalex.org/W2073881372","https://openalex.org/W2078358278","https://openalex.org/W2081730310","https://openalex.org/W2084375915","https://openalex.org/W2085370119","https://openalex.org/W2089988218","https://openalex.org/W2092544746","https://openalex.org/W2093581634","https://openalex.org/W2097778810","https://openalex.org/W2103776834","https://openalex.org/W2104108767","https://openalex.org/W2106576546","https://openalex.org/W2109975391","https://openalex.org/W2111733587","https://openalex.org/W2113329733","https://openalex.org/W2114431588","https://openalex.org/W2115436242","https://openalex.org/W2116625490","https://openalex.org/W2121574075","https://openalex.org/W2123027770","https://openalex.org/W2127480960","https://openalex.org/W2130466489","https://openalex.org/W2132624776","https://openalex.org/W2133484938","https://openalex.org/W2137585293","https://openalex.org/W2147714160","https://openalex.org/W2150648355","https://openalex.org/W2151346683","https://openalex.org/W2152178770","https://openalex.org/W2154566529","https://openalex.org/W2155694597","https://openalex.org/W2156737907","https://openalex.org/W2157484103","https://openalex.org/W2158784643","https://openalex.org/W2160629127","https://openalex.org/W2165674132","https://openalex.org/W2165681080","https://openalex.org/W2166047534","https://openalex.org/W2169085154","https://openalex.org/W2337185564","https://openalex.org/W4249387902","https://openalex.org/W6656989551","https://openalex.org/W6665657008","https://openalex.org/W6666450722","https://openalex.org/W6668714836","https://openalex.org/W6673223395","https://openalex.org/W6675042906","https://openalex.org/W6675856930","https://openalex.org/W6676536575","https://openalex.org/W6807570336","https://openalex.org/W7073603523"],"related_works":["https://openalex.org/W1573015311","https://openalex.org/W1570419641","https://openalex.org/W4386509167","https://openalex.org/W2889938001","https://openalex.org/W4293771607","https://openalex.org/W3165034028","https://openalex.org/W2296499206","https://openalex.org/W3210319767","https://openalex.org/W132037564","https://openalex.org/W2917626761"],"abstract_inverted_index":{"Being":[0],"a":[1,56],"relatively":[2],"new":[3],"addition":[4],"to":[5,24,41,80,89],"the":[6,34,84,91,93,96],"'omics'":[7],"field,":[8],"metabolomics":[9,44,87,108,111,118],"is":[10,55,78],"still":[11],"evolving":[12],"its":[13,19,25],"own":[14,20],"computational":[15,21,71,105],"infrastructure":[16],"and":[17,31,67,73,88,95,119],"assessing":[18],"needs.":[22],"Due":[23],"strong":[26],"emphasis":[27],"on":[28],"chemical":[29,39],"information":[30],"because":[32],"of":[33,36,48,86,104],"importance":[35],"linking":[37],"that":[38],"data":[40],"biological":[42],"consequences,":[43],"must":[45],"combine":[46],"elements":[47],"traditional":[49,52],"bioinformatics":[50],"with":[51,83],"cheminformatics.":[53],"This":[54,76],"significant":[57],"challenge":[58],"as":[59],"these":[60],"two":[61],"fields":[62],"have":[63],"evolved":[64],"quite":[65],"separately":[66],"require":[68],"very":[69],"different":[70],"tools":[72,116],"skill":[74],"sets.":[75],"review":[77],"intended":[79],"familiarize":[81],"readers":[82],"field":[85],"outline":[90],"needs,":[92],"challenges":[94],"recent":[97],"progress":[98],"being":[99],"made":[100],"in":[101],"four":[102],"areas":[103],"metabolomics:":[106],"(i)":[107],"databases;":[109],"(ii)":[110],"LIMS;":[112],"(iii)":[113],"spectral":[114],"analysis":[115],"for":[117],"(iv)":[120],"metabolic":[121],"modeling.":[122]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":12}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
