{"id":"https://openalex.org/W2104106724","doi":"https://doi.org/10.1093/bib/bbm016","title":"Improving life sciences information retrieval using semantic web technology","display_name":"Improving life sciences information retrieval using semantic web technology","publication_year":2007,"publication_date":"2007-05-25","ids":{"openalex":"https://openalex.org/W2104106724","doi":"https://doi.org/10.1093/bib/bbm016","mag":"2104106724","pmid":"https://pubmed.ncbi.nlm.nih.gov/17526593"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm016","pdf_url":"https://academic.oup.com/bib/article-pdf/8/3/172/575590/bbm016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/8/3/172/575590/bbm016.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052350106","display_name":"Donghui Quan","orcid":"https://orcid.org/0000-0003-4811-2581"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Quan","raw_affiliation_strings":["IBM, San Jose, CA 95141, USA. dennisq@us.ibm.com","IBM, San Jose, CA 95141, USA"],"affiliations":[{"raw_affiliation_string":"IBM, San Jose, CA 95141, USA. dennisq@us.ibm.com","institution_ids":["https://openalex.org/I1341412227"]},{"raw_affiliation_string":"IBM, San Jose, CA 95141, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5052350106"],"corresponding_institution_ids":["https://openalex.org/I1341412227"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.8637,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.93609128,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":"3","first_page":"172","last_page":"182"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8310770988464355},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.7025015354156494},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6662886142730713},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6240335702896118},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.5818637609481812},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.5242924094200134},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5067172646522522},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.48348599672317505},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4415634274482727},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4354930818080902},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3997926712036133}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8310770988464355},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.7025015354156494},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6662886142730713},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6240335702896118},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.5818637609481812},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.5242924094200134},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5067172646522522},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.48348599672317505},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4415634274482727},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4354930818080902},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3997926712036133},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbm016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm016","pdf_url":"https://academic.oup.com/bib/article-pdf/8/3/172/575590/bbm016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17526593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17526593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1002.231","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1002.231","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/8/3/172.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.983.7030","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.983.7030","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/early/2007/05/25/bib.bbm016.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbm016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm016","pdf_url":"https://academic.oup.com/bib/article-pdf/8/3/172/575590/bbm016.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104106724.pdf","grobid_xml":"https://content.openalex.org/works/W2104106724.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W106850508","https://openalex.org/W387168707","https://openalex.org/W1603776115","https://openalex.org/W1965014786","https://openalex.org/W2037038404","https://openalex.org/W2045089599","https://openalex.org/W2046166587","https://openalex.org/W2055043387","https://openalex.org/W2129250201","https://openalex.org/W2129714799","https://openalex.org/W2137848173","https://openalex.org/W2156892696","https://openalex.org/W2296157284"],"related_works":["https://openalex.org/W2349698472","https://openalex.org/W2366430559","https://openalex.org/W1985801232","https://openalex.org/W2023110884","https://openalex.org/W2005492920","https://openalex.org/W1975429881","https://openalex.org/W2355823470","https://openalex.org/W1710908466","https://openalex.org/W1542183781","https://openalex.org/W1585941060"],"abstract_inverted_index":{"The":[0,101],"ability":[1],"to":[2,38,69,72,112,120,125,191],"retrieve":[3],"relevant":[4,169],"information":[5,54,77,88,129,148,179],"is":[6,23],"at":[7],"the":[8,18,41,91,126,132,142,158],"heart":[9],"of":[10,13,99,128,141,171,184],"every":[11],"aspect":[12],"research":[14],"and":[15,29,50,58,63,89,115,173],"development":[16],"in":[17,31,45,84,109,131],"life":[19,133,192],"sciences":[20,134],"industry.":[21],"Information":[22],"often":[24],"distributed":[25],"across":[26],"multiple":[27],"systems":[28],"recorded":[30],"a":[32,145,152,196,199],"way":[33],"that":[34,166],"makes":[35],"it":[36],"difficult":[37],"piece":[39],"together":[40],"complete":[42],"picture.":[43],"Differences":[44],"data":[46],"formats,":[47],"naming":[48],"schemes":[49],"network":[51,161],"protocols":[52],"amongst":[53],"sources,":[55],"both":[56],"public":[57],"private,":[59],"must":[60,80],"be":[61,70,189],"overcome,":[62],"user":[64],"interfaces":[65],"not":[66],"only":[67],"need":[68],"able":[71],"tap":[73],"into":[74,177],"these":[75,113,186],"diverse":[76],"sources":[78],"but":[79],"also":[81],"assist":[82],"users":[83],"filtering":[85],"out":[86],"extraneous":[87],"highlighting":[90],"key":[92],"relationships":[93],"hidden":[94],"within":[95],"an":[96,139],"aggregated":[97],"set":[98],"information.":[100],"Semantic":[102,122,146],"Web":[103,123],"community":[104],"has":[105],"made":[106],"great":[107],"strides":[108],"proposing":[110],"solutions":[111],"problems,":[114],"many":[116],"efforts":[117],"are":[118,206],"underway":[119],"apply":[121],"techniques":[124],"problem":[127],"retrieval":[130,149],"space.":[135],"This":[136],"article":[137],"gives":[138],"overview":[140],"principles":[143,187],"underlying":[144],"Web-enabled":[147],"system:":[150],"creating":[151],"unified":[153],"abstraction":[154],"for":[155],"knowledge":[156],"using":[157],"RDF":[159],"semantic":[160,164,175],"model;":[162],"designing":[163],"lenses":[165,176],"extract":[167],"contextually":[168],"subsets":[170],"information;":[172],"assembling":[174],"powerful":[178],"displays.":[180],"Furthermore,":[181],"concrete":[182],"examples":[183],"how":[185],"can":[188],"applied":[190],"science":[193],"problems":[194],"including":[195],"scenario":[197],"involving":[198],"drug":[200],"discovery":[201],"dashboard":[202],"prototype":[203],"called":[204],"BioDash":[205],"provided.":[207]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
