{"id":"https://openalex.org/W2125038106","doi":"https://doi.org/10.1093/bib/bbm011","title":"A practical guide to the art of RNA gene prediction","display_name":"A practical guide to the art of RNA gene prediction","publication_year":2007,"publication_date":"2007-05-04","ids":{"openalex":"https://openalex.org/W2125038106","doi":"https://doi.org/10.1093/bib/bbm011","mag":"2125038106","pmid":"https://pubmed.ncbi.nlm.nih.gov/17483123"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbm011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm011","pdf_url":"https://academic.oup.com/bib/article-pdf/8/6/396/690234/bbm011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/8/6/396/690234/bbm011.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012564571","display_name":"Irmtraud M. Meyer","orcid":"https://orcid.org/0000-0002-4048-3479"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"I. M. Meyer","raw_affiliation_strings":["Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4. irmtraud.meyer@cantab.net","Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4. irmtraud.meyer@cantab.net","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5012564571"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.5547,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.89673178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":"6","first_page":"396","last_page":"414"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6405418515205383},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6152470111846924},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5377649664878845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5289376378059387},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.44469407200813293},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4429870843887329},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4420973062515259},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3064119219779968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25853431224823},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2516757547855377},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19506976008415222},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.11783707141876221}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6405418515205383},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6152470111846924},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5377649664878845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5289376378059387},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.44469407200813293},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4429870843887329},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4420973062515259},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3064119219779968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25853431224823},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2516757547855377},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19506976008415222},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.11783707141876221},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbm011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm011","pdf_url":"https://academic.oup.com/bib/article-pdf/8/6/396/690234/bbm011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17483123","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17483123","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:14213","is_oa":false,"landing_page_url":"https://edoc.mdc-berlin.de/14213/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Review"}],"best_oa_location":{"id":"doi:10.1093/bib/bbm011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbm011","pdf_url":"https://academic.oup.com/bib/article-pdf/8/6/396/690234/bbm011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125038106.pdf","grobid_xml":"https://content.openalex.org/works/W2125038106.grobid-xml"},"referenced_works_count":159,"referenced_works":["https://openalex.org/W152222929","https://openalex.org/W1490955408","https://openalex.org/W1522740115","https://openalex.org/W1543796220","https://openalex.org/W1572817673","https://openalex.org/W1585306636","https://openalex.org/W1603866234","https://openalex.org/W1647075334","https://openalex.org/W1822105579","https://openalex.org/W1845151788","https://openalex.org/W1909512798","https://openalex.org/W1920303762","https://openalex.org/W1950410402","https://openalex.org/W1966222122","https://openalex.org/W1967517087","https://openalex.org/W1967864248","https://openalex.org/W1968282235","https://openalex.org/W1974736226","https://openalex.org/W1979005482","https://openalex.org/W1982610079","https://openalex.org/W1983534198","https://openalex.org/W1986234964","https://openalex.org/W1988205757","https://openalex.org/W1990853496","https://openalex.org/W1991398089","https://openalex.org/W1992941735","https://openalex.org/W1994898384","https://openalex.org/W1995397373","https://openalex.org/W1996631481","https://openalex.org/W1996948250","https://openalex.org/W1998585544","https://openalex.org/W1998894153","https://openalex.org/W1999404678","https://openalex.org/W2000904576","https://openalex.org/W2009570821","https://openalex.org/W2009736453","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2012739246","https://openalex.org/W2017707648","https://openalex.org/W2018216725","https://openalex.org/W2019940850","https://openalex.org/W2020021066","https://openalex.org/W2020812606","https://openalex.org/W2021333801","https://openalex.org/W2022159242","https://openalex.org/W2024412145","https://openalex.org/W2025305823","https://openalex.org/W2025763720","https://openalex.org/W2042881722","https://openalex.org/W2044131517","https://openalex.org/W2045895660","https://openalex.org/W2050341877","https://openalex.org/W2051231236","https://openalex.org/W2051946709","https://openalex.org/W2053833990","https://openalex.org/W2054613021","https://openalex.org/W2055043387","https://openalex.org/W2058044724","https://openalex.org/W2064345118","https://openalex.org/W2065262709","https://openalex.org/W2068565185","https://openalex.org/W2069165607","https://openalex.org/W2073105366","https://openalex.org/W2073802365","https://openalex.org/W2074882547","https://openalex.org/W2076963640","https://openalex.org/W2082124641","https://openalex.org/W2085115334","https://openalex.org/W2088384373","https://openalex.org/W2088938573","https://openalex.org/W2093471887","https://openalex.org/W2095145214","https://openalex.org/W2097654784","https://openalex.org/W2098044747","https://openalex.org/W2099275700","https://openalex.org/W2099468911","https://openalex.org/W2100179968","https://openalex.org/W2102046276","https://openalex.org/W2103250001","https://openalex.org/W2105070391","https://openalex.org/W2105714972","https://openalex.org/W2105860012","https://openalex.org/W2106144124","https://openalex.org/W2106554405","https://openalex.org/W2106882534","https://openalex.org/W2108770512","https://openalex.org/W2109823109","https://openalex.org/W2110056878","https://openalex.org/W2114143204","https://openalex.org/W2115215562","https://openalex.org/W2116619380","https://openalex.org/W2117431427","https://openalex.org/W2118239133","https://openalex.org/W2120893338","https://openalex.org/W2122679732","https://openalex.org/W2128016314","https://openalex.org/W2128356721","https://openalex.org/W2129621498","https://openalex.org/W2131538597","https://openalex.org/W2134861301","https://openalex.org/W2136145671","https://openalex.org/W2136280642","https://openalex.org/W2136725005","https://openalex.org/W2137283579","https://openalex.org/W2137640371","https://openalex.org/W2138455866","https://openalex.org/W2138664009","https://openalex.org/W2140302584","https://openalex.org/W2140446903","https://openalex.org/W2141157874","https://openalex.org/W2141301071","https://openalex.org/W2142066620","https://openalex.org/W2142768277","https://openalex.org/W2143593381","https://openalex.org/W2145149786","https://openalex.org/W2147793526","https://openalex.org/W2149429041","https://openalex.org/W2149608597","https://openalex.org/W2151203827","https://openalex.org/W2151922790","https://openalex.org/W2151994495","https://openalex.org/W2154467419","https://openalex.org/W2155131966","https://openalex.org/W2155944730","https://openalex.org/W2156847802","https://openalex.org/W2156852055","https://openalex.org/W2158033466","https://openalex.org/W2158826174","https://openalex.org/W2160021399","https://openalex.org/W2160810865","https://openalex.org/W2166884280","https://openalex.org/W2167557255","https://openalex.org/W2437193971","https://openalex.org/W3123644304","https://openalex.org/W3141335569","https://openalex.org/W4234778846","https://openalex.org/W4236236547","https://openalex.org/W4238121736","https://openalex.org/W4246766586","https://openalex.org/W4247187192","https://openalex.org/W4250052351","https://openalex.org/W4254219935","https://openalex.org/W4292158482","https://openalex.org/W4293196852","https://openalex.org/W6642022778","https://openalex.org/W6656552268","https://openalex.org/W6664116207","https://openalex.org/W6664387049","https://openalex.org/W6666701331","https://openalex.org/W6669045993","https://openalex.org/W6669639427","https://openalex.org/W6675187192","https://openalex.org/W6677805664","https://openalex.org/W6679079381","https://openalex.org/W6679554742","https://openalex.org/W6680093329","https://openalex.org/W6717818658","https://openalex.org/W6809123296"],"related_works":["https://openalex.org/W4200033037","https://openalex.org/W3213655218","https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W54859794","https://openalex.org/W3147425560","https://openalex.org/W2233436997","https://openalex.org/W3018517591","https://openalex.org/W2057323302","https://openalex.org/W1971332228"],"abstract_inverted_index":{"This":[0],"review":[1],"introduces":[2],"the":[3],"different":[4],"strategies":[5],"and":[6,36,47],"computational":[7,31],"methods":[8],"that":[9],"can":[10],"be":[11],"used":[12],"in":[13,44],"order":[14],"to":[15,41],"predict":[16],"RNA":[17,25,34],"genes.":[18],"It":[19],"discusses":[20],"our":[21],"current":[22],"view":[23],"of":[24,33],"genes":[26,35],"as":[27,29],"well":[28],"recent":[30],"analyses":[32],"concludes":[37],"with":[38],"an":[39],"outlook":[40],"future":[42],"directions":[43],"algorithm":[45],"development":[46],"data":[48],"analyses.":[49]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
