{"id":"https://openalex.org/W2127480960","doi":"https://doi.org/10.1093/bib/bbl027","title":"Bio-ontologies: current trends and future directions","display_name":"Bio-ontologies: current trends and future directions","publication_year":2006,"publication_date":"2006-05-23","ids":{"openalex":"https://openalex.org/W2127480960","doi":"https://doi.org/10.1093/bib/bbl027","mag":"2127480960","pmid":"https://pubmed.ncbi.nlm.nih.gov/16899495"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbl027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbl027","pdf_url":"https://academic.oup.com/bib/article-pdf/7/3/256/936193/bbl027.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/7/3/256/936193/bbl027.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073807945","display_name":"Olivier Bodenreider","orcid":"https://orcid.org/0000-0003-4769-4217"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"O. Bodenreider","raw_affiliation_strings":["National Library of Medicine, Bethesda, MD 20894, USA. olivier@nlm.nih.gov","National Library of Medicine, Bethesda, MD 20894, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine, Bethesda, MD 20894, USA. olivier@nlm.nih.gov","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, Bethesda, MD 20894, USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5073807945"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I2800548410"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":12.1311,"has_fulltext":false,"cited_by_count":382,"citation_normalized_percentile":{"value":0.99276347,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"7","issue":"3","first_page":"256","last_page":"274"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7891381978988647},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.7596393823623657},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.621324360370636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5663220882415771},{"id":"https://openalex.org/keywords/formality","display_name":"Formality","score":0.5649132132530212},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5210418105125427},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.49374040961265564},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.47306621074676514},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.41876816749572754},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.41410917043685913},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.3175358176231384},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.2884606719017029},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2262830138206482},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1454090178012848},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.14115023612976074},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11577975749969482},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.08123701810836792},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.07704320549964905}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7891381978988647},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.7596393823623657},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.621324360370636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5663220882415771},{"id":"https://openalex.org/C2777159308","wikidata":"https://www.wikidata.org/wiki/Q1757948","display_name":"Formality","level":2,"score":0.5649132132530212},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5210418105125427},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.49374040961265564},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.47306621074676514},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.41876816749572754},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.41410917043685913},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.3175358176231384},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.2884606719017029},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2262830138206482},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1454090178012848},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.14115023612976074},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11577975749969482},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.08123701810836792},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.07704320549964905},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bbl027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbl027","pdf_url":"https://academic.oup.com/bib/article-pdf/7/3/256/936193/bbl027.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16899495","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16899495","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.580.4919","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.580.4919","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/7/3/256.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.76.3197","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.76.3197","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://lhncbc.nlm.nih.gov/lhc/docs/published/2006/pub2006053.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1847325","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1847325","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/cbc1127e-2df9-4cc2-a116-eba3cac1669b","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/cbc1127e-2df9-4cc2-a116-eba3cac1669b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bodenreider, O & Stevens, R 2006, 'Bio-ontologies: Current trends and future directions', Briefings in Bioinformatics, vol. 7, no. 3, pp. 256-274. https://doi.org/10.1093/bib/bbl027","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/cbc1127e-2df9-4cc2-a116-eba3cac1669b","is_oa":true,"landing_page_url":"http://bib.oxfordjournals.org/content/7/3/256.full","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bodenreider, O & Stevens, R 2006, 'Bio-ontologies: Current trends and future directions', Briefings in Bioinformatics, vol. 7, no. 3, pp. 256-274. https://doi.org/10.1093/bib/bbl027","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bib/bbl027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbl027","pdf_url":"https://academic.oup.com/bib/article-pdf/7/3/256/936193/bbl027.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W45319280","https://openalex.org/W56707815","https://openalex.org/W64662365","https://openalex.org/W136568393","https://openalex.org/W186611765","https://openalex.org/W189967632","https://openalex.org/W599966374","https://openalex.org/W638789088","https://openalex.org/W1498882734","https://openalex.org/W1502374275","https://openalex.org/W1523150955","https://openalex.org/W1526278906","https://openalex.org/W1529522905","https://openalex.org/W1622687797","https://openalex.org/W1757909678","https://openalex.org/W1854704447","https://openalex.org/W1963354518","https://openalex.org/W1965148536","https://openalex.org/W1965446264","https://openalex.org/W1971094449","https://openalex.org/W1972573222","https://openalex.org/W1973415432","https://openalex.org/W1981021538","https://openalex.org/W1981732549","https://openalex.org/W1983403209","https://openalex.org/W1986613416","https://openalex.org/W1994100378","https://openalex.org/W1999789303","https://openalex.org/W2001277092","https://openalex.org/W2002043951","https://openalex.org/W2002846332","https://openalex.org/W2012209567","https://openalex.org/W2016166457","https://openalex.org/W2017220776","https://openalex.org/W2017301218","https://openalex.org/W2030220506","https://openalex.org/W2035923305","https://openalex.org/W2036665185","https://openalex.org/W2048786492","https://openalex.org/W2052381790","https://openalex.org/W2052514670","https://openalex.org/W2057419867","https://openalex.org/W2057613070","https://openalex.org/W2060308777","https://openalex.org/W2065502072","https://openalex.org/W2072121213","https://openalex.org/W2074639050","https://openalex.org/W2088561970","https://openalex.org/W2094258495","https://openalex.org/W2098780184","https://openalex.org/W2103260426","https://openalex.org/W2104340625","https://openalex.org/W2105922907","https://openalex.org/W2110782695","https://openalex.org/W2115296656","https://openalex.org/W2123171788","https://openalex.org/W2130367921","https://openalex.org/W2133362215","https://openalex.org/W2134363729","https://openalex.org/W2134418889","https://openalex.org/W2135940255","https://openalex.org/W2144303444","https://openalex.org/W2147993707","https://openalex.org/W2148118756","https://openalex.org/W2152888402","https://openalex.org/W2153123746","https://openalex.org/W2154446060","https://openalex.org/W2156610741","https://openalex.org/W2157272674","https://openalex.org/W2159583324","https://openalex.org/W2160292112","https://openalex.org/W2160453515","https://openalex.org/W2163670493","https://openalex.org/W2167304222","https://openalex.org/W2611471614","https://openalex.org/W2624907881","https://openalex.org/W2744744159","https://openalex.org/W4231824804","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W4206428734","https://openalex.org/W2732632690","https://openalex.org/W2012420033","https://openalex.org/W1794266373","https://openalex.org/W2102229151","https://openalex.org/W2138664789","https://openalex.org/W2365397974","https://openalex.org/W32047914","https://openalex.org/W3021743147"],"abstract_inverted_index":{"In":[0,48,70],"recent":[1],"years,":[2],"as":[3,17,37],"a":[4,18,38,58],"knowledge-based":[5],"discipline,":[6],"bioinformatics":[7],"has":[8,30,91,111],"been":[9,31,55],"made":[10],"more":[11],"computationally":[12],"amenable.":[13],"After":[14],"its":[15],"beginnings":[16],"technology":[19],"advocated":[20],"by":[21,34],"computer":[22],"scientists":[23],"to":[24,40,46,63,125],"overcome":[25],"problems":[26],"of":[27,61,98,109],"heterogeneity,":[28],"ontology":[29,99,110],"taken":[32],"up":[33],"biologists":[35],"themselves":[36],"means":[39],"consistently":[41],"annotate":[42],"features":[43],"from":[44],"genotype":[45],"phenotype.":[47],"medical":[49],"informatics,":[50],"artifacts":[51],"called":[52],"ontologies":[53,79,126],"have":[54,83,100],"used":[56],"for":[57,67],"longer":[59],"period":[60],"time":[62],"produce":[64],"controlled":[65],"lexicons":[66],"coding":[68],"schemes.":[69],"this":[71,105,117],"article,":[72],"we":[73],"review":[74,116],"the":[75,89,93,107],"current":[76],"position":[77],"in":[78],"and":[80,106,119,127],"how":[81],"they":[82],"become":[84],"institutionalized":[85],"within":[86,130],"biomedicine.":[87,131],"As":[88],"field":[90],"matured,":[92],"much":[94],"older":[95],"philosophical":[96],"aspects":[97],"come":[101,112],"into":[102],"play.":[103],"With":[104],"institutionalization":[108],"greater":[113],"formality.":[114],"We":[115],"trend":[118],"what":[120],"benefits":[121],"it":[122],"might":[123],"bring":[124],"their":[128],"use":[129]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":27},{"year":2014,"cited_by_count":26},{"year":2013,"cited_by_count":33},{"year":2012,"cited_by_count":31}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
