{"id":"https://openalex.org/W7165566472","doi":"https://doi.org/10.1093/bib/bbag340","title":"ModelistsGCN: a multimodal graph convolutional network framework for single-cell spatial transcriptomic cell typing","display_name":"ModelistsGCN: a multimodal graph convolutional network framework for single-cell spatial transcriptomic cell typing","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7165566472","doi":"https://doi.org/10.1093/bib/bbag340","pmid":"https://pubmed.ncbi.nlm.nih.gov/42328843"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag340","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag340","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5126051904","display_name":"Noa Konforti","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Noa Konforti","raw_affiliation_strings":["Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,"],"raw_orcid":"https://orcid.org/0009-0002-2445-5176","affiliations":[{"raw_affiliation_string":"Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102634555","display_name":"Tal Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Tal Goldberg","raw_affiliation_strings":["Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095657247","display_name":"Michal Danino-Levi","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Michal Danino-Levi","raw_affiliation_strings":["Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139088183","display_name":"Yael Ilan","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yael Ilan","raw_affiliation_strings":["Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103034989","display_name":"Shahar Alon","orcid":"https://orcid.org/0000-0002-7458-3478"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Shahar Alon","raw_affiliation_strings":["Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,"],"raw_orcid":"https://orcid.org/0000-0002-7458-3478","affiliations":[{"raw_affiliation_string":"Institute for Nanotechnology and Advanced Materials (BINA), Bar-Ilan University , Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Alexander Kofkin Faculty of Engineering, Bar-Ilan University, Ramat Gan 5290002,","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan 5290002 ,","institution_ids":["https://openalex.org/I13955877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I13955877"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.87133177,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5351999998092651},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4894999861717224},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4733000099658966},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.46050000190734863},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46000000834465027},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.45739999413490295}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6894000172615051},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5351999998092651},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4894999861717224},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4733000099658966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46149998903274536},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.46050000190734863},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46000000834465027},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.45739999413490295},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42590001225471497},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41510000824928284},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.36309999227523804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3456000089645386},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.33959999680519104},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.25940001010894775},{"id":"https://openalex.org/C2781181686","wikidata":"https://www.wikidata.org/wiki/Q4226068","display_name":"Coherence (philosophical gambling strategy)","level":2,"score":0.2572999894618988},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.2524999976158142}],"mesh":[{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbag340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag340","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42328843","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42328843","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbag340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag340","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1120602066","display_name":null,"funder_award_id":"2958/21","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G2865128450","display_name":null,"funder_award_id":"101117324","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G3134478331","display_name":null,"funder_award_id":"20220069","funder_id":"https://openalex.org/F4320322250","funder_display_name":"Israel Cancer Association"},{"id":"https://openalex.org/G3473408596","display_name":null,"funder_award_id":"929965","funder_id":"https://openalex.org/F4320308990","funder_display_name":"BrightFocus Foundation"}],"funders":[{"id":"https://openalex.org/F4320308990","display_name":"BrightFocus Foundation","ror":"https://ror.org/03cvfxv40"},{"id":"https://openalex.org/F4320322250","display_name":"Israel Cancer Association","ror":"https://ror.org/03yxd7304"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1972618510","https://openalex.org/W1987971958","https://openalex.org/W2471536144","https://openalex.org/W2520858613","https://openalex.org/W2809368942","https://openalex.org/W2915848182","https://openalex.org/W2923300855","https://openalex.org/W2942915404","https://openalex.org/W2952383043","https://openalex.org/W2964015378","https://openalex.org/W3108118546","https://openalex.org/W3125011419","https://openalex.org/W3135358979","https://openalex.org/W3204015056","https://openalex.org/W4210583065","https://openalex.org/W4235169531","https://openalex.org/W4280640171","https://openalex.org/W4289745500","https://openalex.org/W4290154117","https://openalex.org/W4307184360","https://openalex.org/W4309667063","https://openalex.org/W4319069334","https://openalex.org/W4322738920","https://openalex.org/W4380576437","https://openalex.org/W4381548118","https://openalex.org/W4389938094","https://openalex.org/W4399429728","https://openalex.org/W4403922429","https://openalex.org/W4408414133","https://openalex.org/W4410510777","https://openalex.org/W4415692484","https://openalex.org/W4417361777","https://openalex.org/W7124894403"],"related_works":[],"abstract_inverted_index":{"Spatial":[0],"transcriptomics":[1],"technologies":[2],"currently":[3],"face":[4],"a":[5,66,89,134],"trade-off":[6],"between":[7],"spatial":[8,50,76,83,112,169,178],"and":[9,18,78,115,129,141,149,162],"molecular":[10,127],"resolution.":[11],"High-resolution":[12],"single-cell":[13,42,51,84,177],"methods":[14],"such":[15],"as":[16],"MERFISH":[17,148],"Expansion":[19],"Sequencing":[20],"(ExSeq)":[21],"resolve":[22],"individual":[23],"cells":[24],"but":[25],"typically":[26],"profile":[27],"limited":[28,126,182],"gene":[29,74,120,183],"panels,":[30],"restricting":[31],"the":[32,122],"direct":[33],"application":[34],"of":[35,92],"transcriptome-based":[36],"cell":[37,59,85,108],"typing":[38],"strategies":[39],"developed":[40],"for":[41,82,125],"RNA":[43],"sequencing.":[44],"Consequently,":[45],"accurate":[46],"cell-type":[47,131,174],"identification":[48],"in":[49,106,176],"data":[52],"remains":[53],"challenging":[54],"when":[55],"transcriptomic":[56,179],"coverage":[57,128],"per":[58],"is":[60],"sparse.":[61],"Here,":[62],"we":[63],"introduce":[64],"ModelistsGCN,":[65],"semi-supervised":[67],"multimodal":[68],"graph":[69],"convolutional":[70],"framework":[71],"that":[72],"integrates":[73],"expression,":[75,121],"proximity,":[77],"quantitative":[79],"cellular":[80],"morphology":[81],"typing.":[86],"ModelistsGCN":[87,151,172],"uses":[88],"small":[90],"set":[91],"high-confidence":[93],"representative":[94],"cells,":[95],"defined":[96],"by":[97,147],"marker-gene":[98,164],"enrichment,":[99],"to":[100,167],"guide":[101],"clustering":[102,170],"while":[103],"preserving":[104],"flexibility":[105],"identifying":[107],"types.":[109],"By":[110],"incorporating":[111],"neighborhood":[113],"structure":[114],"interpretable":[116],"morphological":[117],"features":[118],"alongside":[119],"method":[123],"compensates":[124],"strengthens":[130],"discrimination.":[132],"Across":[133],"well-annotated":[135],"ExSeq":[136],"mouse":[137],"visual":[138],"cortex":[139],"dataset":[140],"metastatic":[142],"breast":[143],"cancer":[144],"tissues":[145],"profiled":[146],"ExSeq,":[150],"consistently":[152],"demonstrated":[153],"higher":[154],"agreement":[155],"with":[156,181],"reference":[157],"annotations,":[158],"improved":[159],"cluster":[160],"separation,":[161],"stronger":[163],"coherence":[165],"compared":[166],"existing":[168],"approaches.":[171],"improves":[173],"inference":[175],"datasets":[180],"coverage.":[184]},"counts_by_year":[],"updated_date":"2026-06-27T08:28:00.272161","created_date":"2026-06-23T00:00:00"}
