{"id":"https://openalex.org/W7165004467","doi":"https://doi.org/10.1093/bib/bbag321","title":"DeepPTMPred: a multi-modal deep learning framework for accurate prediction of protein post-translational modification sites","display_name":"DeepPTMPred: a multi-modal deep learning framework for accurate prediction of protein post-translational modification sites","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7165004467","doi":"https://doi.org/10.1093/bib/bbag321","pmid":"https://pubmed.ncbi.nlm.nih.gov/42308422"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag321","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag321","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006478489","display_name":"Ce Wang","orcid":"https://orcid.org/0000-0001-6244-1205"},"institutions":[{"id":"https://openalex.org/I167274908","display_name":"Guangxi Minzu University","ror":"https://ror.org/0495efn48","country_code":"CN","type":"education","lineage":["https://openalex.org/I167274908"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenkui Wang","raw_affiliation_strings":["School of Physics and Electronic Information, Guangxi University for Nationalities , 188 East University Road, Nanning, Guangxi, 530006 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Electronic Information, Guangxi University for Nationalities , 188 East University Road, Nanning, Guangxi, 530006 ,","institution_ids":["https://openalex.org/I167274908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120238431","display_name":"Qianhui Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qianhui Jiang","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":"https://orcid.org/0009-0003-2690-7583","affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107954022","display_name":"Dan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Dan Yu","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100597582","display_name":"Jiahui Guan","orcid":"https://orcid.org/0009-0007-2839-2199"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiahui Guan","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138828777","display_name":"Zimeng Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Zimeng Chen","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138803542","display_name":"Xiaoling Lu","orcid":"https://orcid.org/0009-0001-3251-831X"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xiaoling Lu","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":"https://orcid.org/0009-0001-3251-831X","affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089928380","display_name":"Bin Yan","orcid":"https://orcid.org/0000-0002-5290-4576"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Bin Yan","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101433660","display_name":"Jing Qin","orcid":"https://orcid.org/0000-0002-8327-8846"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Qin","raw_affiliation_strings":["School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , 66 Gongchang Road, Shenzhen, Guangdong, 518107 ,"],"raw_orcid":"https://orcid.org/0000-0002-8327-8846","affiliations":[{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , 66 Gongchang Road, Shenzhen, Guangdong, 518107 ,","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072988055","display_name":"Yong Liu","orcid":"https://orcid.org/0000-0001-9031-9696"},"institutions":[{"id":"https://openalex.org/I167274908","display_name":"Guangxi Minzu University","ror":"https://ror.org/0495efn48","country_code":"CN","type":"education","lineage":["https://openalex.org/I167274908"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Liu","raw_affiliation_strings":["School of Artificial Intelligence, Guangxi University for Nationalities , 188 East University Road, Nanning, Guangxi, 530006 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Guangxi University for Nationalities , 188 East University Road, Nanning, Guangxi, 530006 ,","institution_ids":["https://openalex.org/I167274908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100704433","display_name":"Junwen Wang","orcid":"https://orcid.org/0000-0002-4432-4707"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Junwen Wang","raw_affiliation_strings":["Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,"],"raw_orcid":"https://orcid.org/0000-0002-4432-4707","affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong , 34 Hospital Road, Hong Kong SAR ,","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74002387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8504999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8504999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.020800000056624413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6234999895095825},{"id":"https://openalex.org/keywords/posttranslational-modification","display_name":"Posttranslational modification","score":0.4472000002861023},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.37450000643730164},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.30169999599456787},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.2962000072002411}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7182000279426575},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6967999935150146},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6234999895095825},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.482699990272522},{"id":"https://openalex.org/C100631289","wikidata":"https://www.wikidata.org/wiki/Q898362","display_name":"Posttranslational modification","level":3,"score":0.4472000002861023},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.37450000643730164},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.30169999599456787},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.2962000072002411},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25780001282691956},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2524999976158142},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2524999976158142}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098412","descriptor_name":"Predictive Learning Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098437","descriptor_name":"Prediction Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag321","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42308422","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42308422","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13275012","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13275012/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag321","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4264344871044159,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1063217684","display_name":null,"funder_award_id":"2207101590","funder_id":"https://openalex.org/F4320322170","funder_display_name":"University of Hong Kong"},{"id":"https://openalex.org/G1611756110","display_name":null,"funder_award_id":"2201101499","funder_id":"https://openalex.org/F4320322170","funder_display_name":"University of Hong Kong"},{"id":"https://openalex.org/G4915698849","display_name":null,"funder_award_id":"2026GXNSFAA00640939","funder_id":"https://openalex.org/F4320322768","funder_display_name":"Natural Science Foundation of Guangxi Province"},{"id":"https://openalex.org/G8858689660","display_name":null,"funder_award_id":"62566005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322170","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86"},{"id":"https://openalex.org/F4320322768","display_name":"Natural Science Foundation of Guangxi Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1832538561","https://openalex.org/W1973364049","https://openalex.org/W1983704814","https://openalex.org/W1998440070","https://openalex.org/W2005893121","https://openalex.org/W2013743510","https://openalex.org/W2026683417","https://openalex.org/W2038163496","https://openalex.org/W2043794217","https://openalex.org/W2070986947","https://openalex.org/W2095001952","https://openalex.org/W2103413641","https://openalex.org/W2148143831","https://openalex.org/W2151581834","https://openalex.org/W2157658519","https://openalex.org/W2174602966","https://openalex.org/W2189621653","https://openalex.org/W2205194111","https://openalex.org/W2352710988","https://openalex.org/W2415245143","https://openalex.org/W2477246746","https://openalex.org/W2510053021","https://openalex.org/W2594486201","https://openalex.org/W2768420956","https://openalex.org/W2892748271","https://openalex.org/W2903682118","https://openalex.org/W2940438782","https://openalex.org/W2956696709","https://openalex.org/W2984955289","https://openalex.org/W2986717577","https://openalex.org/W3017874951","https://openalex.org/W3020440546","https://openalex.org/W3021991062","https://openalex.org/W3087636752","https://openalex.org/W3126232929","https://openalex.org/W3132607382","https://openalex.org/W3141691617","https://openalex.org/W3152110994","https://openalex.org/W3162383196","https://openalex.org/W3177828909","https://openalex.org/W3185245858","https://openalex.org/W3194355129","https://openalex.org/W3209499715","https://openalex.org/W3213184710","https://openalex.org/W4200175423","https://openalex.org/W4223533630","https://openalex.org/W4280490458","https://openalex.org/W4285160402","https://openalex.org/W4308165701","https://openalex.org/W4311581561","https://openalex.org/W4315865958","https://openalex.org/W4327550249","https://openalex.org/W4375954646","https://openalex.org/W4391271862","https://openalex.org/W4393115925","https://openalex.org/W4407342667","https://openalex.org/W4411187809"],"related_works":[],"abstract_inverted_index":{"Post-translational":[0],"modifications":[1],"are":[2,17],"important":[3],"for":[4,93,141],"regulating":[5],"cellular":[6],"functions.":[7],"Although":[8],"traditional":[9],"experimental":[10],"methods":[11],"accurately":[12,107],"identify":[13],"PTM":[14,149],"sites,":[15],"they":[16],"time-consuming.":[18],"In":[19],"this":[20],"study,":[21],"we":[22],"propose":[23],"a":[24],"novel":[25],"model":[26,41,77,106],"capable":[27],"of":[28,32,87,96,135,148],"predicting":[29],"17":[30],"types":[31],"PTMs":[33,136],"through":[34],"multi-modal":[35],"integration":[36],"and":[37,58,67,74,91,101,114,123,151],"AlphaFold":[38],"predictions.":[39],"Our":[40],"employs":[42],"an":[43],"enhanced":[44],"CNN-transformer":[45],"architecture":[46],"to":[47,61,120],"capture":[48,63],"local":[49],"dependencies":[50],"within":[51],"the":[52,84,94,133,146],"sequence,":[53],"while":[54],"incorporating":[55],"structural":[56],"features":[57],"evolutionary":[59],"patterns":[60],"effectively":[62],"complex":[64],"spatial":[65],"relationships":[66],"global":[68],"contextual":[69],"dependencies.":[70],"Through":[71],"rigorous":[72],"cross-validation":[73],"testing,":[75],"our":[76,105],"demonstrates":[78],"exceptional":[79],"performance,":[80],"achieving":[81],"area":[82],"under":[83],"curve":[85],"scores":[86],"96.5%,":[88],"91.6%,":[89],"91.0%,":[90],"89.5%":[92],"prediction":[95,147],"hydroxylation,":[97],"malonylation,":[98],"O-linked":[99],"glycosylation,":[100],"phosphorylation,":[102],"respectively.":[103],"Notably,":[104],"identified":[108,117],"known":[109],"phosphorylation":[110],"sites":[111,150],"on":[112],"tau":[113],"two":[115],"recently":[116],"residues":[118],"linked":[119],"pre-tangle":[121],"stages":[122],"early":[124],"Alzheimer's":[125],"disease":[126],"pathology.":[127],"This":[128],"work":[129],"not":[130],"only":[131],"deepens":[132],"understanding":[134],"but":[137],"also":[138],"holds":[139],"promise":[140],"advancing":[142],"future":[143],"research":[144],"in":[145],"functional":[152],"annotation.":[153]},"counts_by_year":[],"updated_date":"2026-06-18T08:14:46.076299","created_date":"2026-06-18T00:00:00"}
