{"id":"https://openalex.org/W7165033444","doi":"https://doi.org/10.1093/bib/bbag320","title":"Machine learning\u2013guided multimodal profiling defines perturbed immune states at the time of cancer diagnosis","display_name":"Machine learning\u2013guided multimodal profiling defines perturbed immune states at the time of cancer diagnosis","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7165033444","doi":"https://doi.org/10.1093/bib/bbag320","pmid":"https://pubmed.ncbi.nlm.nih.gov/42308424"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag320","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag320","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051060247","display_name":"Peggy Berlin","orcid":"https://orcid.org/0000-0001-8354-6970"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peggy Berlin","raw_affiliation_strings":["Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,"],"raw_orcid":"https://orcid.org/0000-0001-8354-6970","affiliations":[{"raw_affiliation_string":"Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138768468","display_name":"Amin Mirzaei","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Amin Mirzaei","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Rostock , Albert-Einstein-Str. 22, 18059 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Rostock , Albert-Einstein-Str. 22, 18059 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091454805","display_name":"Felix Steinbeck","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Felix Steinbeck","raw_affiliation_strings":["Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038989124","display_name":"Martin Becker","orcid":"https://orcid.org/0000-0002-1751-1056"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Becker","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Rostock , Albert-Einstein-Str. 22, 18059 Rostock ,","Department of Mathematics and Computer Science, Marburg University , Hans-Meerwein-Stra\u00dfe 6, 35043 Marburg ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Rostock , Albert-Einstein-Str. 22, 18059 Rostock ,","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, Marburg University , Hans-Meerwein-Stra\u00dfe 6, 35043 Marburg ,","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014723339","display_name":"Brigitte M\u00fcller\u2010Hilke","orcid":"https://orcid.org/0000-0002-6575-6824"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Brigitte M\u00fcller-Hilke","raw_affiliation_strings":["Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093113334","display_name":"Wendy Bergmann\u2010Ewert","orcid":"https://orcid.org/0000-0001-7221-3900"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wendy Bergmann-Ewert","raw_affiliation_strings":["Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Core Facility for Cell Sorting and Cell Analysis, Rostock University Medical Center , Schillingallee 70, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078921129","display_name":"Daniel Dubinski","orcid":"https://orcid.org/0000-0001-5568-8429"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Dubinski","raw_affiliation_strings":["Department of Neurosurgery, Rostock University Medical Center, University of Rostock , Schillingallee 35, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurosurgery, Rostock University Medical Center, University of Rostock , Schillingallee 35, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137451758","display_name":"Thomas M. Freiman","orcid":"https://orcid.org/0000-0002-2591-2829"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas M Freiman","raw_affiliation_strings":["Department of Neurosurgery, Rostock University Medical Center, University of Rostock , Schillingallee 35, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurosurgery, Rostock University Medical Center, University of Rostock , Schillingallee 35, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112622306","display_name":"Daniel Struder","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Str\u00fcder","raw_affiliation_strings":["Department of Otorhinolaryngology, Head and Neck Surgery \u201cOtto Koerner\u201d, Rostock University Medical Center , Doberaner Str. 137, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Otorhinolaryngology, Head and Neck Surgery \u201cOtto Koerner\u201d, Rostock University Medical Center , Doberaner Str. 137, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028592587","display_name":"Theresa Momper","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Theresa Momper","raw_affiliation_strings":["Department of Otorhinolaryngology, Head and Neck Surgery \u201cOtto Koerner\u201d, Rostock University Medical Center , Doberaner Str. 137, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Otorhinolaryngology, Head and Neck Surgery \u201cOtto Koerner\u201d, Rostock University Medical Center , Doberaner Str. 137, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054715004","display_name":"Annabell Wolff","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Annabell Wolff","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090741262","display_name":"Philipp Kaps","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Kaps","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033484349","display_name":"Julia Henne","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julia Henne","raw_affiliation_strings":["Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138795477","display_name":"Clemens Schafmayer","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Clemens Schafmayer","raw_affiliation_strings":["Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025055846","display_name":"Michael Linnebacher","orcid":"https://orcid.org/0000-0001-8054-1402"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Linnebacher","raw_affiliation_strings":["Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,"],"raw_orcid":"https://orcid.org/0000-0001-8054-1402","affiliations":[{"raw_affiliation_string":"Department of Operative Medicine, Clinic of General, Visceral, Thorax, Vascular and Transplantation Surgery, Rostock University Medical Center , Schillingallee 35, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059178679","display_name":"Charlotte Wagner","orcid":"https://orcid.org/0000-0003-2239-5392"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Charlotte Wagner","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138761596","display_name":"Karen Rischm\u00fcller","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karen Rischm\u00fcller","raw_affiliation_strings":["Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110447822","display_name":"Martin Philipp","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Philipp","raw_affiliation_strings":["Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044763904","display_name":"Georg Lamprecht","orcid":"https://orcid.org/0000-0003-0997-3135"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Georg Lamprecht","raw_affiliation_strings":["Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Internal Medicine, Division of Gastroenterology, Hepatology and Nutritional Medicine, Rostock University Medical Center , Ernst-Heydemann-Str. 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111345242","display_name":"Paul Meissner","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul Meissner","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047325739","display_name":"Karoline Schulz","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karoline Schulz","raw_affiliation_strings":["Department of Medical Biology and Electron Microscopy Center, Rostock University Medical Center , Strempelstra\u00dfe 14, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biology and Electron Microscopy Center, Rostock University Medical Center , Strempelstra\u00dfe 14, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138821973","display_name":"Christian Junghanss","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Junghanss","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025491599","display_name":"Bernd Kreikemeyer","orcid":"https://orcid.org/0000-0001-9527-5098"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernd Kreikemeyer","raw_affiliation_strings":["Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Rostock , Schillingallee 70, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Rostock , Schillingallee 70, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050912576","display_name":"Sonja Oehmcke-Hecht","orcid":"https://orcid.org/0000-0002-3368-6219"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sonja Oehmcke-Hecht","raw_affiliation_strings":["Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Rostock , Schillingallee 70, 18057 Rostock ,"],"raw_orcid":"https://orcid.org/0000-0002-3368-6219","affiliations":[{"raw_affiliation_string":"Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Rostock , Schillingallee 70, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055468693","display_name":"Claudia Maletzki","orcid":"https://orcid.org/0000-0002-8389-8439"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Claudia Maletzki","raw_affiliation_strings":["Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine\u2014Clinic and Polyclinic for Hematology, Hemostaseology, Oncology, Stem Cell Therapy and Palliative Medicine, Rostock University Medical Center , Ernst-Heydemann-Stra\u00dfe 6, 18057 Rostock ,","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74822846,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.020600000396370888,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.8787999749183655},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.5069000124931335},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.476500004529953},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4230000078678131},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.41690000891685486},{"id":"https://openalex.org/keywords/peripheral-blood-mononuclear-cell","display_name":"Peripheral blood mononuclear cell","score":0.387800008058548},{"id":"https://openalex.org/keywords/blood-cancer","display_name":"Blood cancer","score":0.37619999051094055},{"id":"https://openalex.org/keywords/peripheral-blood","display_name":"Peripheral blood","score":0.3707999885082245}],"concepts":[{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.8787999749183655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5210000276565552},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.5069000124931335},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.4975000023841858},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.476500004529953},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4230000078678131},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.41690000891685486},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40709999203681946},{"id":"https://openalex.org/C137061746","wikidata":"https://www.wikidata.org/wiki/Q736033","display_name":"Peripheral blood mononuclear cell","level":3,"score":0.387800008058548},{"id":"https://openalex.org/C2992972558","wikidata":"https://www.wikidata.org/wiki/Q2509220","display_name":"Blood cancer","level":3,"score":0.37619999051094055},{"id":"https://openalex.org/C3017910909","wikidata":"https://www.wikidata.org/wiki/Q618363","display_name":"Peripheral blood","level":2,"score":0.3707999885082245},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3684000074863434},{"id":"https://openalex.org/C2778690821","wikidata":"https://www.wikidata.org/wiki/Q212354","display_name":"Cytokine","level":2,"score":0.36090001463890076},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.3580000102519989},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3330000042915344},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.3328000009059906},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.31769999861717224},{"id":"https://openalex.org/C2777002142","wikidata":"https://www.wikidata.org/wiki/Q5031432","display_name":"Cancer biomarkers","level":3,"score":0.29580000042915344},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.2856999933719635},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.2775999903678894},{"id":"https://openalex.org/C157081693","wikidata":"https://www.wikidata.org/wiki/Q21113934","display_name":"CCL18","level":4,"score":0.27480000257492065},{"id":"https://openalex.org/C2778102761","wikidata":"https://www.wikidata.org/wiki/Q332181","display_name":"Natural killer cell","level":4,"score":0.26510000228881836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26330000162124634},{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.2587999999523163},{"id":"https://openalex.org/C2780648854","wikidata":"https://www.wikidata.org/wiki/Q2745824","display_name":"Immunopathology","level":2,"score":0.25780001282691956},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.2526000142097473}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095763","descriptor_name":"Immunoinformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag320","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42308424","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42308424","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13274990","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13274990/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag320","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W1508860390","https://openalex.org/W1970902949","https://openalex.org/W1973012451","https://openalex.org/W2010581370","https://openalex.org/W2044328119","https://openalex.org/W2045699238","https://openalex.org/W2088481746","https://openalex.org/W2092740805","https://openalex.org/W2117692326","https://openalex.org/W2127182494","https://openalex.org/W2575095806","https://openalex.org/W2749613778","https://openalex.org/W2751713350","https://openalex.org/W2752236919","https://openalex.org/W2765982206","https://openalex.org/W2803040262","https://openalex.org/W2885656545","https://openalex.org/W2892957400","https://openalex.org/W2897249806","https://openalex.org/W2910027227","https://openalex.org/W2942610007","https://openalex.org/W2953390364","https://openalex.org/W2981524284","https://openalex.org/W3002759430","https://openalex.org/W3016005983","https://openalex.org/W3110528877","https://openalex.org/W3129600143","https://openalex.org/W3131202131","https://openalex.org/W3150796757","https://openalex.org/W3151427897","https://openalex.org/W3165579841","https://openalex.org/W3184841442","https://openalex.org/W3192051735","https://openalex.org/W4206426302","https://openalex.org/W4210312200","https://openalex.org/W4210924686","https://openalex.org/W4230096730","https://openalex.org/W4281738617","https://openalex.org/W4294000412","https://openalex.org/W4309096287","https://openalex.org/W4312155062","https://openalex.org/W4319600886","https://openalex.org/W4376131461","https://openalex.org/W4378212544","https://openalex.org/W4380786205","https://openalex.org/W4386703993","https://openalex.org/W4387019644","https://openalex.org/W4387503501","https://openalex.org/W4388518183","https://openalex.org/W4389309771","https://openalex.org/W4391611274","https://openalex.org/W4391823912","https://openalex.org/W4392200639","https://openalex.org/W4394935565","https://openalex.org/W4399808812","https://openalex.org/W4400879089","https://openalex.org/W4400922733","https://openalex.org/W4401431554","https://openalex.org/W4401519542","https://openalex.org/W4401603916","https://openalex.org/W4402713389","https://openalex.org/W4403878521","https://openalex.org/W4404860402","https://openalex.org/W4405798608","https://openalex.org/W4407030853","https://openalex.org/W4407380418","https://openalex.org/W4408659833","https://openalex.org/W4408851987","https://openalex.org/W4409500017","https://openalex.org/W4410250197","https://openalex.org/W4410412295","https://openalex.org/W4410595403","https://openalex.org/W4411152431","https://openalex.org/W4412544577","https://openalex.org/W4414575221","https://openalex.org/W4416186766","https://openalex.org/W4416422660","https://openalex.org/W4416755053","https://openalex.org/W7125524642","https://openalex.org/W7140591692"],"related_works":[],"abstract_inverted_index":{"Altered":[0],"immune":[1,14,51,54,74,103,135,165,189],"states":[2],"at":[3],"the":[4,157],"time":[5],"of":[6,21,38,78,84,108,113,178,195],"cancer":[7,45,138],"diagnosis":[8],"remain":[9],"insufficiently":[10],"characterized.":[11],"Although":[12],"circulating":[13,187],"biomarkers":[15],"offer":[16],"a":[17,172,183],"promising,":[18],"non-invasive":[19],"way":[20],"analysing":[22],"systemic":[23,114],"tumour-host":[24],"interactions,":[25],"their":[26],"potential":[27],"remains":[28],"poorly":[29],"defined.":[30],"Here,":[31],"we":[32],"present":[33],"an":[34],"integrated":[35],"multi-omics":[36,127,176],"analysis":[37],"peripheral":[39,179],"blood":[40,180],"mononuclear":[41],"cells":[42],"from":[43],"treatment-na\u00efve":[44],"patients,":[46],"minimizing":[47],"confounding":[48],"by":[49,116],"therapy-induced":[50],"changes,":[52],"combining":[53],"phenotyping":[55],"(flow":[56],"cytometry,":[57],"FC),":[58],"multiplex":[59],"cytokine":[60],"profiling,":[61],"and":[62,87,93,97,110,130,137,159,181,198],"single-cell":[63,126],"RNA":[64],"sequencing":[65],"(scRNA-seq).":[66],"Compared":[67],"with":[68],"healthy":[69],"donors,":[70],"patients":[71],"exhibited":[72],"widespread":[73],"dysregulation,":[75],"including":[76],"expansion":[77],"FOXP3+":[79],"regulatory":[80],"T":[81],"cells,":[82,92],"depletion":[83],"CD16+CD11b+":[85],"monocytes":[86],"CD56^dim^":[88],"Natural":[89],"killer":[90],"(NK)":[91],"elevated":[94],"plasma":[95],"IL-6":[96],"IL-4":[98],"levels.":[99],"scRNA-seq":[100],"identified":[101],"cancer-associated":[102,134,188],"signatures,":[104],"notably":[105],"consistent":[106],"upregulation":[107],"THBS1":[109],"CH25H,":[111],"indicative":[112],"imprinting":[115],"tumour-derived":[117],"cues.":[118],"We":[119],"further":[120],"developed":[121],"machine":[122],"learning-guided":[123],"models":[124,151],"integrating":[125],"data":[128],"(sc-FC":[129],"scRNA-seq)":[131],"to":[132,164],"characterize":[133],"patterning":[136],"type-related":[139],"signal":[140],"structure,":[141],"while":[142],"providing":[143],"biologically":[144],"interpretable":[145],"feature":[146],"attribution":[147],"across":[148],"modalities.":[149],"The":[150],"achieved":[152],"robust":[153],"classification":[154],"performance":[155],"within":[156],"cohort":[158],"revealed":[160],"modality-spanning":[161],"features":[162],"linked":[163],"state":[166],"alterations.":[167],"Together,":[168],"these":[169],"findings":[170],"establish":[171],"framework":[173],"for":[174,185],"immune-based,":[175],"profiling":[177],"provide":[182],"resource":[184],"discovering":[186],"signatures.":[190],"This":[191],"supports":[192],"future":[193],"development":[194],"immune-based":[196],"diagnostics":[197],"disease":[199],"monitoring":[200],"approaches.":[201]},"counts_by_year":[],"updated_date":"2026-06-18T08:14:46.076299","created_date":"2026-06-18T00:00:00"}
