{"id":"https://openalex.org/W7164751479","doi":"https://doi.org/10.1093/bib/bbag304","title":"Predicting protein\u2013protein interaction sites based on dynamic perception mechanism within a hierarchical E(n)-equivariant graph","display_name":"Predicting protein\u2013protein interaction sites based on dynamic perception mechanism within a hierarchical E(n)-equivariant graph","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7164751479","doi":"https://doi.org/10.1093/bib/bbag304","pmid":"https://pubmed.ncbi.nlm.nih.gov/42289050"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag304","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag304","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100372201","display_name":"Xue Li","orcid":"https://orcid.org/0000-0002-4515-6792"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue Li","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","Science and Technology Center, Dalian University Affiliated Xinhua Hospital , No. 156 Wansui Street, Shahekou District, Dalian 116021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]},{"raw_affiliation_string":"Science and Technology Center, Dalian University Affiliated Xinhua Hospital , No. 156 Wansui Street, Shahekou District, Dalian 116021 ,","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138626986","display_name":"Suheng Qiao","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Suheng Qiao","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004904800","display_name":"Z Li","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqi Li","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138624312","display_name":"Shihua Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shihua Zhou","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373521","display_name":"Jianmin Wang","orcid":"https://orcid.org/0000-0001-8910-0929"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jianmin Wang","raw_affiliation_strings":["The Interdisciplinary Graduate Program in Integrative Biotechnology, Yonsei University , 85 Songdogwahakro, Yeonsu-gu, Incheon 21983 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Interdisciplinary Graduate Program in Integrative Biotechnology, Yonsei University , 85 Songdogwahakro, Yeonsu-gu, Incheon 21983 ,","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017131314","display_name":"B G Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Wang","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University , No. 10 Xuefu Street, Dalian Economic and Technological Development Area, Dalian 116622 ,","institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006420025","display_name":"Tao Song","orcid":"https://orcid.org/0000-0002-0130-3340"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tao Song","raw_affiliation_strings":["College of Computer Science and Technology, China University of Petroleum (East China) , No. 66 Changjiang West Road, Huangdao District, Qingdao 266555 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum (East China) , No. 66 Changjiang West Road, Huangdao District, Qingdao 266555 ,","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5122937510","display_name":"Ben Cao","orcid":null},"institutions":[{"id":"https://openalex.org/I49332381","display_name":"University of Oklahoma Health Sciences Center","ror":"https://ror.org/0457zbj98","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I49332381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ben Cao","raw_affiliation_strings":["Department of Cell Biology, University of Oklahoma Health Science Center , 800 NE 15th Street, Oklahoma City, OK 73104 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, University of Oklahoma Health Science Center , 800 NE 15th Street, Oklahoma City, OK 73104 ,","institution_ids":["https://openalex.org/I49332381"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006420025","https://openalex.org/A5017131314","https://openalex.org/A5122937510"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944","https://openalex.org/I4210162190","https://openalex.org/I49332381"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.73163397,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6880999803543091,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6880999803543091,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.12060000002384186,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0771000012755394,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.574999988079071},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5543000102043152},{"id":"https://openalex.org/keywords/perception","display_name":"Perception","score":0.49410000443458557},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4733999967575073},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4616999924182892},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.44609999656677246},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4372999966144562},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4052000045776367}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7853000164031982},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.574999988079071},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5708000063896179},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5543000102043152},{"id":"https://openalex.org/C26760741","wikidata":"https://www.wikidata.org/wiki/Q160402","display_name":"Perception","level":2,"score":0.49410000443458557},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4828999936580658},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4733999967575073},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4616999924182892},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.44609999656677246},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4372999966144562},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4052000045776367},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.3682999908924103},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.33230000734329224},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.32690000534057617},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.31529998779296875},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.31029999256134033},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.302700012922287},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.29750001430511475},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.29660001397132874},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2964000105857849},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2856000065803528},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27959999442100525},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.2720000147819519},{"id":"https://openalex.org/C124527596","wikidata":"https://www.wikidata.org/wiki/Q17029359","display_name":"Hierarchical control system","level":3,"score":0.27000001072883606},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.26109999418258667}],"mesh":[{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag304","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42289050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42289050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13264840","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13264840/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag304","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1708588729","display_name":null,"funder_award_id":"2024-BS-267","funder_id":"https://openalex.org/F4320323086","funder_display_name":"Natural Science Foundation of Liaoning Province"},{"id":"https://openalex.org/G4201996127","display_name":null,"funder_award_id":"D23006","funder_id":"https://openalex.org/F4320336698","funder_display_name":"Overseas Expertise Introduction Center for Discipline Innovation of Food Nutrition and Human Health (111 Center)"},{"id":"https://openalex.org/G4457078305","display_name":null,"funder_award_id":"62572088","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5664334659","display_name":null,"funder_award_id":"2024-MS-212","funder_id":"https://openalex.org/F4320323086","funder_display_name":"Natural Science Foundation of Liaoning Province"},{"id":"https://openalex.org/G6419423173","display_name":null,"funder_award_id":"62502063","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6683504761","display_name":null,"funder_award_id":"ZR2021QF023","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G8610243087","display_name":null,"funder_award_id":"62272079","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323086","display_name":"Natural Science Foundation of Liaoning Province","ror":null},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320336698","display_name":"Overseas Expertise Introduction Center for Discipline Innovation of Food Nutrition and Human Health (111 Center)","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W2955690154","https://openalex.org/W2971405760","https://openalex.org/W2990458240","https://openalex.org/W2998496395","https://openalex.org/W3080498684","https://openalex.org/W3173803351","https://openalex.org/W3197696221","https://openalex.org/W3209520664","https://openalex.org/W4205177317","https://openalex.org/W4224737779","https://openalex.org/W4283586679","https://openalex.org/W4309362167","https://openalex.org/W4311114767","https://openalex.org/W4317369987","https://openalex.org/W4327550249","https://openalex.org/W4362522229","https://openalex.org/W4389076414","https://openalex.org/W4390278034","https://openalex.org/W4390368810","https://openalex.org/W4394907732","https://openalex.org/W4399238140","https://openalex.org/W4399411203","https://openalex.org/W4399466894","https://openalex.org/W4400520514","https://openalex.org/W4401110102","https://openalex.org/W4403423088","https://openalex.org/W4403998045","https://openalex.org/W4406062865","https://openalex.org/W4406440058","https://openalex.org/W4407356649","https://openalex.org/W4408145717","https://openalex.org/W4409087459","https://openalex.org/W4409148410","https://openalex.org/W4409641110","https://openalex.org/W4409841613","https://openalex.org/W4409882638","https://openalex.org/W4410997516","https://openalex.org/W4411042546","https://openalex.org/W4411090134","https://openalex.org/W4411393629","https://openalex.org/W4412434764","https://openalex.org/W4412725369","https://openalex.org/W4412735791","https://openalex.org/W4412836996","https://openalex.org/W4412945408","https://openalex.org/W4413889531","https://openalex.org/W4414404547","https://openalex.org/W4414499039","https://openalex.org/W4414856514","https://openalex.org/W4415053647","https://openalex.org/W7130542785","https://openalex.org/W7131349997","https://openalex.org/W7131637523"],"related_works":[],"abstract_inverted_index":{"Accurate":[0],"prediction":[1],"of":[2,44,55,89,136],"protein-protein":[3],"interaction":[4,103,155],"sites":[5,156,187],"is":[6],"crucial":[7],"to":[8,51,94,101],"understanding":[9],"biological":[10,177],"processes,":[11],"elucidating":[12],"disease":[13],"mechanisms,":[14],"and":[15,41,91,167,179,188,193],"accelerating":[16],"drug":[17],"discovery.":[18],"Although":[19],"graph":[20,113],"neural":[21,114],"network":[22],"methods":[23,32],"have":[24],"shown":[25],"potential":[26],"in":[27,134,144],"this":[28,62],"field,":[29],"but":[30,157],"existing":[31],"are":[33],"limited":[34],"by":[35],"the":[36,86,102,176],"static":[37],"integrate":[38],"multi-group":[39],"features":[40,90],"insufficient":[42,52],"perception":[43,81],"hierarchical":[45,107],"3D":[46,120],"spatial":[47,121],"geometric":[48],"information,":[49],"leading":[50],"predictive":[53,182],"ability":[54],"orphan":[56,186],"sites.":[57],"To":[58],"address":[59],"these":[60],"issues,":[61],"paper":[63],"proposes":[64],"a":[65,69,77,106],"Dperception":[66],"mechanism":[67,82,178],"within":[68],"Hierarchical":[70],"E(n)-equivariant":[71,112],"Graph":[72],"architecture":[73,109],"(DHEG).":[74],"DHEG":[75,131,150,172],"introduces":[76],"dynamic":[78],"feature":[79,95],"importance":[80],"that":[83,116,130,149,171],"adaptively":[84],"perceives":[85],"contextual":[87],"inter-dependencies":[88],"assigns":[92],"weights":[93],"groups":[96],"based":[97,110],"on":[98,111],"their":[99],"relevance":[100],"relationship.":[104],"And":[105],"gated":[108],"networks":[115],"effectively":[117],"captures":[118],"protein":[119],"structures":[122],"while":[123],"mitigating":[124],"over-smoothing":[125],"problems.":[126],"The":[127],"results":[128],"show":[129,170],"achieves":[132],"improvements":[133],"11":[135],"13":[137],"key":[138],"metrics,":[139],"with":[140,161,175],"an":[141],"enhancement":[142],"8%":[143],"Matthews":[145],"correlation":[146],"coefficient,":[147],"indicating":[148],"not":[151],"only":[152],"predicts":[153],"more":[154],"also":[158],"does":[159],"so":[160],"greater":[162],"reliability.":[163],"Furthermore,":[164],"case":[165],"studies":[166],"visualization":[168],"analyzes":[169],"aligns":[173],"better":[174],"has":[180],"excellent":[181],"capabilities":[183],"for":[184],"both":[185],"continuous":[189],"regions,":[190],"demonstrating":[191],"interpretability,":[192],"application":[194],"potential.":[195]},"counts_by_year":[],"updated_date":"2026-07-10T07:45:09.275182","created_date":"2026-06-15T00:00:00"}
