{"id":"https://openalex.org/W7163528385","doi":"https://doi.org/10.1093/bib/bbag291","title":"Pathogenicity prediction for noncanonical splice-altering variants based on multimodal feature fusion","display_name":"Pathogenicity prediction for noncanonical splice-altering variants based on multimodal feature fusion","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7163528385","doi":"https://doi.org/10.1093/bib/bbag291","pmid":"https://pubmed.ncbi.nlm.nih.gov/42242678"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag291","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag291","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041607266","display_name":"Li X","orcid":"https://orcid.org/0000-0002-5981-2762"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoyan Li","raw_affiliation_strings":["Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education , No. 220 Handan Road, Yangpu District, Shanghai, 200433,"],"raw_orcid":"https://orcid.org/0000-0002-8967-4663","affiliations":[{"raw_affiliation_string":"Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education , No. 220 Handan Road, Yangpu District, Shanghai, 200433,","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103277567","display_name":"Zhen Peng","orcid":"https://orcid.org/0009-0002-1234-7979"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Peng","raw_affiliation_strings":["Institutes of Physical Science and Information Technology, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institutes of Physical Science and Information Technology, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601,","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060914360","display_name":"Yiran Zhao","orcid":"https://orcid.org/0009-0000-1810-6880"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiran Zhao","raw_affiliation_strings":["Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069207609","display_name":"Shuhan Wang","orcid":"https://orcid.org/0009-0007-9729-359X"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuhan Wang","raw_affiliation_strings":["Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137811685","display_name":"Xingpeng Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Zhou","raw_affiliation_strings":["Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124425878","display_name":"Xiongjian Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105806","display_name":"Zhongda Hospital Southeast University","ror":"https://ror.org/01k3hq685","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105806"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiongjian Luo","raw_affiliation_strings":["Department of Psychiatry and Psychosomatics, Zhongda Hospital, School of Medicine, Advanced Institute for Life and Health, Jiangsu Provincial Key Laboratory of Brain Science and Medicine, Southeast University , No. 87 Dingjiaqiao Road, Nanjing , Jiangsu, 210009,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry and Psychosomatics, Zhongda Hospital, School of Medicine, Advanced Institute for Life and Health, Jiangsu Provincial Key Laboratory of Brain Science and Medicine, Southeast University , No. 87 Dingjiaqiao Road, Nanjing , Jiangsu, 210009,","institution_ids":["https://openalex.org/I4210105806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071754273","display_name":"Yansen Su","orcid":"https://orcid.org/0000-0002-3855-7133"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yansen Su","raw_affiliation_strings":["School of Artificial Intelligence, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":"https://orcid.org/0000-0002-3855-7133","affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137909605","display_name":"Chunhou Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunhou Zheng","raw_affiliation_strings":["School of Artificial Intelligence, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065943710","display_name":"Junfeng Xia","orcid":"https://orcid.org/0000-0003-3024-1705"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junfeng Xia","raw_affiliation_strings":["Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,"],"raw_orcid":"https://orcid.org/0000-0003-3024-1705","affiliations":[{"raw_affiliation_string":"Information Materials and Intelligent Sensing Laboratory of Anhui Province and School of Life Sciences and Medical Engineering, Anhui University , No. 111 Jiulong Road, Hefei, Anhui, 230601 ,","institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041607266","https://openalex.org/A5065943710"],"corresponding_institution_ids":["https://openalex.org/I143868143","https://openalex.org/I197869895","https://openalex.org/I24943067"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.63839037,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.6218000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.6218000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.19120000302791595,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12331","display_name":"Hereditary Neurological Disorders","score":0.05220000073313713,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8255000114440918},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.534500002861023},{"id":"https://openalex.org/keywords/mosaic","display_name":"Mosaic","score":0.47130000591278076},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4702000021934509},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.43560001254081726},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4023999869823456},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.3946000039577484},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.38269999623298645}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8255000114440918},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5917999744415283},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5530999898910522},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.534500002861023},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5116999745368958},{"id":"https://openalex.org/C110739175","wikidata":"https://www.wikidata.org/wiki/Q133067","display_name":"Mosaic","level":2,"score":0.47130000591278076},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4702000021934509},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.43560001254081726},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4023999869823456},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.3946000039577484},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.38269999623298645},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.37599998712539673},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3659000098705292},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35589998960494995},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.3384000062942505},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3093000054359436},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29789999127388},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.289900004863739},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.2822999954223633},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2761000096797943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2752000093460083},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2635999917984009}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag291","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42242678","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42242678","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13365626","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13365626/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag291","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1574407021","display_name":null,"funder_award_id":"82401765","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2245046682","display_name":null,"funder_award_id":"U22A2038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2460525815","display_name":null,"funder_award_id":"62433001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4369892327","display_name":null,"funder_award_id":"82101611","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5700703483","display_name":null,"funder_award_id":"62322301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6624819937","display_name":null,"funder_award_id":"62532017","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8658196732","display_name":null,"funder_award_id":"32271283","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W7261346","https://openalex.org/W1556285913","https://openalex.org/W2029979788","https://openalex.org/W2036131961","https://openalex.org/W2051978340","https://openalex.org/W2103777723","https://openalex.org/W2105694586","https://openalex.org/W2115558586","https://openalex.org/W2119818111","https://openalex.org/W2126551936","https://openalex.org/W2138956466","https://openalex.org/W2197459998","https://openalex.org/W2587969176","https://openalex.org/W2739896399","https://openalex.org/W2745065704","https://openalex.org/W2795871670","https://openalex.org/W2909194804","https://openalex.org/W2917925169","https://openalex.org/W2918497364","https://openalex.org/W2952183925","https://openalex.org/W2980949872","https://openalex.org/W2980980552","https://openalex.org/W2990435446","https://openalex.org/W3037601773","https://openalex.org/W3038114454","https://openalex.org/W3046003662","https://openalex.org/W3120354350","https://openalex.org/W3128957759","https://openalex.org/W3133859624","https://openalex.org/W3199639770","https://openalex.org/W3209435229","https://openalex.org/W3215477343","https://openalex.org/W3215596355","https://openalex.org/W4210984894","https://openalex.org/W4220680796","https://openalex.org/W4226065462","https://openalex.org/W4300981668","https://openalex.org/W4318542795","https://openalex.org/W4368374230","https://openalex.org/W4378640002","https://openalex.org/W4387476903","https://openalex.org/W4390616142","https://openalex.org/W4390694351","https://openalex.org/W4393952092","https://openalex.org/W4401021906","https://openalex.org/W4403534323","https://openalex.org/W4405995672","https://openalex.org/W4408225736","https://openalex.org/W4408323919"],"related_works":[],"abstract_inverted_index":{"Splice-altering":[0],"variants":[1,12,61],"(SAVs)":[2],"are":[3,14,245],"the":[4,18,110,149,221],"second":[5],"most":[6],"prevalent":[7],"class":[8],"of":[9,22,41,72,223],"pathogenic":[10,209],"genetic":[11,234],"and":[13,20,97,105,133,139,148,169,193,206,216,236,243],"strongly":[15],"associated":[16,189],"with":[17,190],"occurrence":[19],"development":[21],"various":[23],"diseases.":[24],"However,":[25],"current":[26],"computational":[27,231],"tools":[28],"exhibit":[29],"limited":[30],"predictive":[31],"capability":[32],"beyond":[33],"canonical":[34],"GT-AG":[35],"splice":[36],"sites,":[37],"making":[38],"accurate":[39,138,215],"assessment":[40,71],"noncanonical":[42,59,73,201,224],"SAV":[43,74],"pathogenicity":[44,62,222],"a":[45,64,83,102,106,229],"considerable":[46],"challenge.":[47],"To":[48],"address":[49],"this":[50],"limitation,":[51],"we":[52],"developed":[53],"MOSAIC":[54,76,124,182,212,240],"(multimodal":[55],"feature":[56,159],"fusion":[57,108],"for":[58,69,219,233],"splice-altering":[60],"prediction),":[63],"deep":[65],"learning":[66],"framework":[67,218],"designed":[68],"precise":[70],"pathogenicity.":[75],"integrates":[77,113],"long-range":[78,164],"contextual":[79],"signals":[80],"derived":[81],"from":[82,92],"pretrained":[84],"DNA":[85,167],"language":[86],"model,":[87],"local":[88],"sequence":[89,187],"features":[90],"captured":[91],"multi-scale":[93],"convolutional":[94],"neural":[95],"networks,":[96],"functional":[98],"annotations.":[99],"By":[100],"employing":[101],"transformer":[103],"encoder":[104],"gated":[107],"module,":[109],"model":[111,176],"adaptively":[112],"these":[114],"multimodal":[115],"features.":[116],"Benchmarking":[117],"across":[118],"multiple":[119],"independent":[120],"datasets":[121],"demonstrated":[122],"that":[123,163,181],"consistently":[125],"outperforms":[126],"existing":[127],"state-of-the-art":[128],"methods,":[129],"such":[130],"as":[131,228],"CADD":[132],"SpliceAI.":[134],"It":[135],"remains":[136],"highly":[137],"robust":[140],"when":[141],"evaluated":[142],"on":[143],"rare":[144],"variants,":[145],"gene-independent":[146],"contexts,":[147],"largest":[150],"subset":[151],"where":[152],"all":[153],"comparative":[154],"methods":[155],"yielded":[156],"outputs.":[157],"Furthermore,":[158],"importance":[160],"analysis":[161],"revealed":[162],"dependencies":[165],"in":[166],"sequences":[168],"transformer-based":[170],"integration":[171],"were":[172],"critical":[173],"contributors":[174],"to":[175,208],"performance.":[177],"Interpretability":[178],"analyses":[179],"indicated":[180],"could":[183],"identify":[184],"key":[185],"regulatory":[186],"motifs":[188],"transcription":[191],"factors":[192],"RNA-binding":[194],"proteins,":[195],"offering":[196],"mechanistic":[197],"insight":[198],"into":[199],"how":[200],"SAVs":[202],"disrupt":[203],"splicing":[204],"regulation":[205],"contribute":[207],"processes.":[210],"Overall,":[211],"offers":[213],"an":[214],"interpretable":[217],"predicting":[220],"SAVs,":[225],"thereby":[226],"serving":[227],"dependable":[230],"tool":[232],"diagnostics":[235],"precision":[237],"medicine":[238],"applications.":[239],"source":[241],"code":[242],"data":[244],"available":[246],"at":[247],"https://github.com/Lilab-genomics/MOSAIC.":[248]},"counts_by_year":[],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2026-06-05T00:00:00"}
