{"id":"https://openalex.org/W4405975676","doi":"https://doi.org/10.1093/bib/bbag270","title":"CLCNet: a contrastive learning and chromosome-aware network for genomic prediction in plants","display_name":"CLCNet: a contrastive learning and chromosome-aware network for genomic prediction in plants","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W4405975676","doi":"https://doi.org/10.1093/bib/bbag270","pmid":"https://pubmed.ncbi.nlm.nih.gov/42218721"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag270","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag270","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jiangwei Huang","orcid":"https://orcid.org/0009-0005-7409-9191"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangwei Huang","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":"https://orcid.org/0009-0005-7409-9191","affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024368167","display_name":"Zhihan Yang","orcid":"https://orcid.org/0009-0004-1659-1404"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihan Yang","raw_affiliation_strings":["Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046801990","display_name":"Mou Yin","orcid":"https://orcid.org/0009-0005-8702-0091"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mou Yin","raw_affiliation_strings":["Laboratory of Advanced Breeding Technologies, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Advanced Breeding Technologies, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100323209","display_name":"Chao Li","orcid":"https://orcid.org/0000-0002-5343-1862"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Li","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013264019","display_name":"Jinmin Li","orcid":"https://orcid.org/0000-0002-0900-2497"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinmin Li","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445356","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0003-2883-1087"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110708923","display_name":"Lu Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Huang","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100461536","display_name":"Miaomiao Li","orcid":"https://orcid.org/0000-0003-2132-6168"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Miaomiao Li","raw_affiliation_strings":["Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004188121","display_name":"Chengzhi Liang","orcid":"https://orcid.org/0000-0001-8913-3552"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengzhi Liang","raw_affiliation_strings":["Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014834476","display_name":"Fei He","orcid":"https://orcid.org/0000-0002-1165-3248"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei He","raw_affiliation_strings":["CAS-JIC Centre of Excellence for Plant and Microbial Science, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","Laboratory of Advanced Breeding Technologies, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":"https://orcid.org/0000-0002-1165-3248","affiliations":[{"raw_affiliation_string":"CAS-JIC Centre of Excellence for Plant and Microbial Science, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"Laboratory of Advanced Breeding Technologies, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103889268","display_name":"Runhao Han","orcid":"https://orcid.org/0009-0000-2857-2885"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongcheng Han","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","nstitute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"nstitute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103457777","display_name":"Yuqiang Jiang","orcid":"https://orcid.org/0000-0003-0872-361X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuqiang Jiang","raw_affiliation_strings":["Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","Institute of Genetics and Developmental Biology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Integrative Physiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , No. 1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101 ,","institution_ids":["https://openalex.org/I4210124606"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqi Lake East Road, Huairou District, Beijing, Beijing 101408 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103457777"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210124606","https://openalex.org/I4210165038"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":7.7208,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.92258356,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.911899983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6032297015190125},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.5046015977859497},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4910550117492676},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.458956778049469},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4527554512023926},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4040827751159668},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2236212193965912},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15578192472457886}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6032297015190125},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.5046015977859497},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4910550117492676},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.458956778049469},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4527554512023926},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4040827751159668},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2236212193965912},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15578192472457886}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D032461","descriptor_name":"Chromosomes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032461","descriptor_name":"Chromosomes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032461","descriptor_name":"Chromosomes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032461","descriptor_name":"Chromosomes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbag270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag270","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.1101/2024.12.29.630569","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2024.12.29.630569","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2024/12/30/2024.12.29.630569.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42218721","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42218721","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13222521","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13222521/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag270","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4725496200","display_name":null,"funder_award_id":"Grant Numbers: 2024YFA1209900, 2024YFA1209901, 2024YFA1209902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7970155380","display_name":null,"funder_award_id":"2024YFA1209901","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8290307103","display_name":null,"funder_award_id":"2024YFA1209902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8456619901","display_name":null,"funder_award_id":"2024YFA1209900","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320324787","display_name":"Peking University","ror":"https://ror.org/02v51f717"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336500","display_name":"Peking University Health Science Center","ror":null},{"id":"https://openalex.org/F4320338065","display_name":"Institute of Genetics","ror":"https://ror.org/03gwhmn95"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Abstract":[0],"Genomic":[1],"selection":[2,110,338,360],"(GS)":[3],"leverages":[4],"genome-wide":[5],"markers":[6],"and":[7,35,62,74,101,114,135,147,195,209,223,252,288,304,315,327,339,379,393,432,447,462,475,488,500,513,528,537,556,561],"phenotypes":[8],"to":[9,31,93,168,376],"predict":[10],"breeding":[11],"values,":[12],"with":[13,138,156,173,186,278,357,413],"its":[14,331],"effectiveness":[15],"largely":[16],"dependent":[17],"on":[18,442,498,550],"the":[19,39,44,50,90,119,395,428,458,484,509],"accuracy":[20,251,295],"of":[21,41,46,142,397,430,437,460,467,486,493,511,518,535,542],"genomic":[22,249,272,290,337,362,373,443,473],"prediction":[23,154,250,273,294,474],"(GP)":[24],"models.":[25,150,319],"However,":[26],"GP":[27],"methods":[28],"often":[29],"struggle":[30],"capture":[32,94],"inter-individual":[33,285],"variability":[34],"are":[36],"limited":[37],"by":[38,215,389],"curse":[40],"dimensionality,":[42],"where":[43],"number":[45],"SNPs":[47,326,381],"far":[48],"exceeds":[49],"sample":[51],"size.":[52],"To":[53],"address":[54],"these":[55,238],"challenges,":[56],"we":[57],"present":[58],"CLCNet":[59,78,125,151,231,242,264,292,308,406],"(Contrastive":[60],"Learning":[61],"Chromosome-aware":[63],"Network),":[64],"a":[65,84,103,139,266,348,424,454,506,545],"novel":[66,267],"deep":[67,148,268,317,350,445],"learning":[68,73,86,149,269,277,318,351,356,385,392],"framework":[69,246,270,321,352],"that":[70,88,106,241,274,353],"integrates":[71,275,354],"contrastive":[72,85,276,355],"chromosome-aware":[75,104,279,358,369],"feature":[76,109,280,359],"modeling.":[77],"comprises":[79],"two":[80],"key":[81],"components:":[82],"(i)":[83],"module":[87,105,370],"enhances":[89],"model\u2019s":[91],"ability":[92],"fine-grained,":[95],"genotype-dependent":[96],"phenotypic":[97],"differences":[98],"among":[99],"individuals,":[100],"(ii)":[102],"captures":[107],"structured":[108],"at":[111,427,457,483,508],"both":[112],"chromosome":[113],"genome":[115],"levels,":[116],"thereby":[117],"distilling":[118],"most":[120],"informative":[121,380],"SNPs.":[122],"We":[123,345],"evaluated":[124],"across":[126,382,400],"four":[127,301],"crop":[128,302],"species,":[129],"covering":[130],"ten":[131,305],"agronomically":[132],"important":[133],"traits,":[134,307],"compared":[136],"it":[137],"diverse":[140],"set":[141],"classical":[143,311],"linear,":[144],"machine":[145,313],"learning,":[146,314,446],"achieved":[152],"superior":[153],"performance,":[155],"statistically":[157],"significant":[158],"improvements":[159],"in":[160,206,259,336,559],"Pearson":[161],"correlation":[162],"coefficient":[163],"(PCC),":[164],"ranging":[165],"from":[166],"0.34%":[167],"12.19%":[169],"over":[170],"baseline,":[171],"together":[172],"reduced":[174],"mean":[175],"squared":[176],"error":[177],"(MSE).":[178],"Performance":[179],"gains":[180],"were":[181],"more":[182],"pronounced":[183],"for":[184,247,256,271,333,361,416],"traits":[185,213],"moderate":[187],"linkage":[188],"disequilibrium":[189],"(LD;":[190],"r":[191,219],"2":[192,200,220,228],"=":[193,221],"0.21-0.36)":[194],"high":[196,216],"heritability":[197,225],"(":[198,218,226],"h":[199,227],">":[201],"0.66),":[202],"such":[203],"as":[204],"those":[205],"maize,":[207],"rapeseed,":[208],"soybean.":[210],"For":[211],"cotton":[212],"characterized":[214],"LD":[217],"0.74)":[222],"lower":[224],"<":[229],"0.50),":[230],"maintained":[232],"robust":[233],"performance":[234],"without":[235],"degradation.":[236],"Overall,":[237],"results":[239],"demonstrate":[240],"is":[243,265,423,453,479,505,544],"an":[244,480],"effective":[245],"improving":[248],"holds":[253],"strong":[254],"potential":[255,332,414],"practical":[257,334],"applications":[258,335],"plant":[260,341,449,501,524,526],"breeding.":[261,342,450],"Short":[262],"abstract":[263],"selection.":[281],"By":[282,402],"jointly":[283],"modeling":[284],"genotype\u2013phenotype":[286,411],"variation":[287],"chromosomal":[289],"structure,":[291],"improves":[293,386],"under":[296,364],"high-dimensional,":[297,365],"low-sample-size":[298,366],"conditions.":[299,367],"Across":[300],"species":[303],"agronomic":[306],"consistently":[309],"outperformed":[310],"statistical,":[312],"existing":[316],"The":[320,368,533],"also":[322],"identified":[323],"biologically":[324],"relevant":[325],"candidate":[328,426,456],"genes,":[329],"demonstrating":[330],"computational":[340,448],"Key":[343],"points":[344],"propose":[346],"CLCNet,":[347],"multi-task":[349],"prediction,":[363,444],"explicitly":[371],"exploits":[372],"structural":[374],"information":[375],"select":[377],"representative":[378],"chromosomes.":[383],"Contrastive":[384],"model":[387],"robustness":[388],"stabilizing":[390],"representation":[391],"reducing":[394],"influence":[396],"random":[398],"effects":[399],"samples.":[401],"complementing":[403],"GWAS":[404],"analyses,":[405],"provides":[407],"additional":[408],"insights":[409],"into":[410],"relationships":[412],"relevance":[415],"gene":[417],"discovery.":[418],"Biographical":[419],"Note":[420],"Jiangwei":[421],"Huang":[422],"PhD":[425,455],"Institute":[429,459,485,510,534],"Genetics":[431,461,487,512,536],"Developmental":[433,463,489,514,538],"Biology,":[434,464,490,515,539],"Chinese":[435,465,491,516,540],"Academy":[436,466,492,517,541],"Sciences.":[438,468,494,519],"His":[439,495,520],"research":[440,470,496,521,547],"focuses":[441,497],"Zhihan":[451],"Yang":[452],"Her":[469],"interests":[471,522],"include":[472,523],"bioinformatics.":[476],"Rongcheng":[477],"Han":[478],"associate":[481],"professor":[482,507],"bioinformatics":[499],"phenomics.":[502],"Yuqiang":[503],"Jiang":[504],"genomics,":[525,552],"phenomics":[527],"genetic":[529],"improvement.":[530],"Organization":[531],"description":[532],"Sciences,":[543],"leading":[546],"institute":[548],"focusing":[549],"genetics,":[551],"molecular":[553],"breeding,":[554],"bioinformatics,":[555],"systems":[557],"biology":[558],"plants":[560],"animals.":[562]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}