{"id":"https://openalex.org/W7162342404","doi":"https://doi.org/10.1093/bib/bbag263","title":"ac4C modification sites prediction in human mRNA: a complete review","display_name":"ac4C modification sites prediction in human mRNA: a complete review","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7162342404","doi":"https://doi.org/10.1093/bib/bbag263","pmid":"https://pubmed.ncbi.nlm.nih.gov/42184113"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag263","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag263","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag263","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5121883335","display_name":"Hasan Zulfiqar","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hasan Zulfiqar","raw_affiliation_strings":["Center for AI and Computational Biology, Institute of System Medicine, Peking Union Medical College, Chinese Academy of Medical Sciences , Suzhou 215123 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for AI and Computational Biology, Institute of System Medicine, Peking Union Medical College, Chinese Academy of Medical Sciences , Suzhou 215123 ,","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210122727"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007268369","display_name":"Ramala Masood Ahmad","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210147796","display_name":"University of Faisalabad","ror":"https://ror.org/04eps4h65","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210147796"]},{"id":"https://openalex.org/I61623833","display_name":"University of Agriculture Faisalabad","ror":"https://ror.org/054d77k59","country_code":"PK","type":"education","lineage":["https://openalex.org/I61623833"]}],"countries":["CN","PK"],"is_corresponding":false,"raw_author_name":"Ramala Masood Ahmad","raw_affiliation_strings":["Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China , Chengdu 611731 ,","Department of Plant Breeding and Genetics, University of Agriculture Faisalabad , Faisalabad 38000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China , Chengdu 611731 ,","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Department of Plant Breeding and Genetics, University of Agriculture Faisalabad , Faisalabad 38000 ,","institution_ids":["https://openalex.org/I4210147796","https://openalex.org/I61623833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136984386","display_name":"Hao Lin","orcid":"https://orcid.org/0000-0001-6265-2862"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Lin","raw_affiliation_strings":["Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China , Chengdu 611731 ,"],"raw_orcid":"https://orcid.org/0000-0001-6265-2862","affiliations":[{"raw_affiliation_string":"Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China , Chengdu 611731 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5125334753","display_name":"Xiao-Long Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao-Long Yu","raw_affiliation_strings":["School of Materials Science and Engineering, Hainan University , Haikou 570228 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Materials Science and Engineering, Hainan University , Haikou 570228 ,","institution_ids":["https://openalex.org/I20942203"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.46142795,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.37119999527931213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.37119999527931213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.2612000107765198,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.13429999351501465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.6510000228881836},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5758000016212463},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4717999994754791},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4677000045776367},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4528000056743622},{"id":"https://openalex.org/keywords/human-health","display_name":"Human health","score":0.3862000107765198}],"concepts":[{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.6510000228881836},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5758000016212463},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5317999720573425},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4717999994754791},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4677000045776367},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4528000056743622},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.412200003862381},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38989999890327454},{"id":"https://openalex.org/C2987857752","wikidata":"https://www.wikidata.org/wiki/Q12147","display_name":"Human health","level":2,"score":0.3862000107765198},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3709999918937683},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3668999969959259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.349700003862381},{"id":"https://openalex.org/C100631289","wikidata":"https://www.wikidata.org/wiki/Q898362","display_name":"Posttranslational modification","level":3,"score":0.33880001306533813},{"id":"https://openalex.org/C2993684226","wikidata":"https://www.wikidata.org/wiki/Q2662727","display_name":"Human cell","level":3,"score":0.3167000114917755},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.30160000920295715},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2962999939918518},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2808000147342682},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.28060001134872437},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.258899986743927},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.2565000057220459}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag263","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag263","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42184113","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42184113","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13200550","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13200550/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag263","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag263","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G568885856","display_name":null,"funder_award_id":"62302079","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5846098782","display_name":null,"funder_award_id":"62261017","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":129,"referenced_works":["https://openalex.org/W2049824085","https://openalex.org/W2056132907","https://openalex.org/W2106340111","https://openalex.org/W2108230379","https://openalex.org/W2158381555","https://openalex.org/W2166706771","https://openalex.org/W2255466643","https://openalex.org/W2570205435","https://openalex.org/W2737592062","https://openalex.org/W2760827857","https://openalex.org/W2807280045","https://openalex.org/W2819977475","https://openalex.org/W2901932654","https://openalex.org/W2913783817","https://openalex.org/W2917417457","https://openalex.org/W2924197217","https://openalex.org/W2946345909","https://openalex.org/W2965635599","https://openalex.org/W2967659330","https://openalex.org/W2967960129","https://openalex.org/W2979665139","https://openalex.org/W2984432074","https://openalex.org/W2988993520","https://openalex.org/W2997200074","https://openalex.org/W3004491707","https://openalex.org/W3022821485","https://openalex.org/W3023211159","https://openalex.org/W3024761859","https://openalex.org/W3025741173","https://openalex.org/W3025794503","https://openalex.org/W3035761298","https://openalex.org/W3054552769","https://openalex.org/W3093120804","https://openalex.org/W3096831136","https://openalex.org/W3103815653","https://openalex.org/W3108267036","https://openalex.org/W3119632172","https://openalex.org/W3125072712","https://openalex.org/W3127238141","https://openalex.org/W3132963234","https://openalex.org/W3139580003","https://openalex.org/W3155449447","https://openalex.org/W3160819488","https://openalex.org/W3170959707","https://openalex.org/W3171520305","https://openalex.org/W3179235883","https://openalex.org/W3182414949","https://openalex.org/W3183253630","https://openalex.org/W3190763963","https://openalex.org/W3195747191","https://openalex.org/W3203741962","https://openalex.org/W3206351987","https://openalex.org/W3216759837","https://openalex.org/W4200013827","https://openalex.org/W4206065744","https://openalex.org/W4207028073","https://openalex.org/W4210670866","https://openalex.org/W4220724334","https://openalex.org/W4220901340","https://openalex.org/W4226040666","https://openalex.org/W4226364033","https://openalex.org/W4226408593","https://openalex.org/W4280583453","https://openalex.org/W4283754817","https://openalex.org/W4285891496","https://openalex.org/W4290770672","https://openalex.org/W4297257598","https://openalex.org/W4297486053","https://openalex.org/W4298006235","https://openalex.org/W4307771231","https://openalex.org/W4310675782","https://openalex.org/W4312075150","https://openalex.org/W4318572631","https://openalex.org/W4324373918","https://openalex.org/W4327704282","https://openalex.org/W4365449054","https://openalex.org/W4366699097","https://openalex.org/W4384203764","https://openalex.org/W4386700857","https://openalex.org/W4387780980","https://openalex.org/W4388622785","https://openalex.org/W4389001063","https://openalex.org/W4389149424","https://openalex.org/W4389245186","https://openalex.org/W4389526560","https://openalex.org/W4390678101","https://openalex.org/W4390731249","https://openalex.org/W4390848933","https://openalex.org/W4390946589","https://openalex.org/W4391630693","https://openalex.org/W4392301623","https://openalex.org/W4392763525","https://openalex.org/W4393390527","https://openalex.org/W4394744708","https://openalex.org/W4394913176","https://openalex.org/W4395110469","https://openalex.org/W4396601219","https://openalex.org/W4399158866","https://openalex.org/W4400823820","https://openalex.org/W4400833896","https://openalex.org/W4401044681","https://openalex.org/W4401207826","https://openalex.org/W4402300921","https://openalex.org/W4402520149","https://openalex.org/W4403155240","https://openalex.org/W4403480073","https://openalex.org/W4403782504","https://openalex.org/W4403908610","https://openalex.org/W4404641649","https://openalex.org/W4404650713","https://openalex.org/W4404966357","https://openalex.org/W4405080821","https://openalex.org/W4405086521","https://openalex.org/W4405355275","https://openalex.org/W4405525278","https://openalex.org/W4406069069","https://openalex.org/W4406088386","https://openalex.org/W4406902413","https://openalex.org/W4407024726","https://openalex.org/W4407064199","https://openalex.org/W4407741577","https://openalex.org/W4408220952","https://openalex.org/W4409025601","https://openalex.org/W4409396983","https://openalex.org/W4409641929","https://openalex.org/W4410729740","https://openalex.org/W4411609137","https://openalex.org/W4411792620","https://openalex.org/W4416787502"],"related_works":[],"abstract_inverted_index":{"ac4C":[0,33,45,85,130],"alteration":[1,34],"in":[2,48,88,96],"RNA":[3],"is":[4,10],"a":[5],"conserved":[6],"epigenetic":[7],"mark":[8],"that":[9,120],"critical":[11],"for":[12,31,81,129],"post-transcriptional":[13],"control,":[14],"mRNA":[15,50,90],"stability,":[16],"translational":[17],"efficiency,":[18],"and":[19,39,68,78,94,110,127],"human":[20,49,89],"immune":[21],"function":[22],"regulation.":[23],"In":[24],"the":[25,27,82,104,107],"meantime,":[26],"conventional":[28],"experimental":[29],"procedures":[30],"predicting":[32],"sites":[35,47,87],"are":[36],"costly,":[37],"time-consuming,":[38],"difficult.":[40],"The":[41,73],"precise":[42],"recognition":[43],"of":[44,75,84,106],"modification":[46,86,131],"has":[51,91],"been":[52,92],"greatly":[53],"aided":[54],"by":[55],"computational":[56],"prediction":[57],"techniques":[58,80],"using":[59],"sequence":[60],"data,":[61],"machine":[62],"learning":[63,66],"(ML),":[64],"deep":[65],"(DL),":[67],"large":[69],"language":[70],"models":[71],"(LLMs).":[72],"application":[74],"ML,":[76],"DL,":[77],"LLM-based":[79],"identification":[83],"evaluated":[93],"contrasted":[95],"this":[97,121],"review.":[98],"Distinctively,":[99],"we":[100],"have":[101],"also":[102],"addressed":[103],"shortcomings":[105],"existing":[108],"methods":[109],"tools,":[111],"as":[112,114],"well":[113],"potential":[115],"future":[116],"developments.":[117],"We":[118],"anticipate":[119],"study":[122],"will":[123],"provide":[124],"sufficient":[125],"information":[126],"awareness":[128],"research.":[132]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-05-26T00:00:00"}
