{"id":"https://openalex.org/W7162937492","doi":"https://doi.org/10.1093/bib/bbag262","title":"Gene set analysis for time-to-event outcome: comparison of a new approach based on the generalized Berk\u2013Jones statistic with existing methods in presence of intra gene-set correlation","display_name":"Gene set analysis for time-to-event outcome: comparison of a new approach based on the generalized Berk\u2013Jones statistic with existing methods in presence of intra gene-set correlation","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7162937492","doi":"https://doi.org/10.1093/bib/bbag262","pmid":"https://pubmed.ncbi.nlm.nih.gov/42218714"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag262","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag262","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017245995","display_name":"Thomas Fert\u00e9","orcid":"https://orcid.org/0000-0001-8455-4665"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I197681013","display_name":"Universit\u00e9 Paris-Est Cr\u00e9teil","ror":"https://ror.org/05ggc9x40","country_code":"FR","type":"education","lineage":["https://openalex.org/I197681013"]},{"id":"https://openalex.org/I3018323443","display_name":"Centre Hospitalier Universitaire de Bordeaux","ror":"https://ror.org/01hq89f96","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]},{"id":"https://openalex.org/I4210112727","display_name":"H\u00f4pital Pellegrin","ror":"https://ror.org/02x581406","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443","https://openalex.org/I4210112727"]},{"id":"https://openalex.org/I4210119150","display_name":"Institut de Recherche Vaccinale","ror":"https://ror.org/02f9r3321","country_code":"FR","type":"facility","lineage":["https://openalex.org/I197681013","https://openalex.org/I4210116296","https://openalex.org/I4210119150"]},{"id":"https://openalex.org/I4210130325","display_name":"H\u00f4pitaux Universitaires Henri-Mondor","ror":"https://ror.org/033yb0967","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210130325"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Fert\u00e9","raw_affiliation_strings":["P\u00f4le de Sant\u00e9 Publique , CHU de Bordeaux, Pl. Am\u00e9lie Raba L\u00e9on, F-33000 Bordeaux ,","SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,"],"raw_orcid":"https://orcid.org/0000-0001-8455-4665","affiliations":[{"raw_affiliation_string":"P\u00f4le de Sant\u00e9 Publique , CHU de Bordeaux, Pl. Am\u00e9lie Raba L\u00e9on, F-33000 Bordeaux ,","institution_ids":["https://openalex.org/I3018323443","https://openalex.org/I4210112727"]},{"raw_affiliation_string":"SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","institution_ids":["https://openalex.org/I15057530"]},{"raw_affiliation_string":"SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I15057530","https://openalex.org/I4210106115"]},{"raw_affiliation_string":"VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,","institution_ids":["https://openalex.org/I4210119150","https://openalex.org/I4210130325","https://openalex.org/I197681013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045776393","display_name":"Laura Villain","orcid":"https://orcid.org/0000-0003-4208-900X"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I197681013","display_name":"Universit\u00e9 Paris-Est Cr\u00e9teil","ror":"https://ror.org/05ggc9x40","country_code":"FR","type":"education","lineage":["https://openalex.org/I197681013"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]},{"id":"https://openalex.org/I4210119150","display_name":"Institut de Recherche Vaccinale","ror":"https://ror.org/02f9r3321","country_code":"FR","type":"facility","lineage":["https://openalex.org/I197681013","https://openalex.org/I4210116296","https://openalex.org/I4210119150"]},{"id":"https://openalex.org/I4210130325","display_name":"H\u00f4pitaux Universitaires Henri-Mondor","ror":"https://ror.org/033yb0967","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210130325"]},{"id":"https://openalex.org/I4210152261","display_name":"Intelligent Transport Systems Niedersachsen","ror":"https://ror.org/05xyrf554","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210152261"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"Laura Villain","raw_affiliation_strings":["ESQlabs GmbH , Am Sportplatz 7, D-26683 Saterland, Niedersachsen ,","SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ESQlabs GmbH , Am Sportplatz 7, D-26683 Saterland, Niedersachsen ,","institution_ids":["https://openalex.org/I4210152261"]},{"raw_affiliation_string":"SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","institution_ids":["https://openalex.org/I15057530"]},{"raw_affiliation_string":"SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I15057530","https://openalex.org/I4210106115"]},{"raw_affiliation_string":"VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,","institution_ids":["https://openalex.org/I4210119150","https://openalex.org/I4210130325","https://openalex.org/I197681013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137498186","display_name":"Rodolphe Thi\u00e9baut","orcid":null},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I197681013","display_name":"Universit\u00e9 Paris-Est Cr\u00e9teil","ror":"https://ror.org/05ggc9x40","country_code":"FR","type":"education","lineage":["https://openalex.org/I197681013"]},{"id":"https://openalex.org/I3018323443","display_name":"Centre Hospitalier Universitaire de Bordeaux","ror":"https://ror.org/01hq89f96","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]},{"id":"https://openalex.org/I4210112727","display_name":"H\u00f4pital Pellegrin","ror":"https://ror.org/02x581406","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443","https://openalex.org/I4210112727"]},{"id":"https://openalex.org/I4210119150","display_name":"Institut de Recherche Vaccinale","ror":"https://ror.org/02f9r3321","country_code":"FR","type":"facility","lineage":["https://openalex.org/I197681013","https://openalex.org/I4210116296","https://openalex.org/I4210119150"]},{"id":"https://openalex.org/I4210130325","display_name":"H\u00f4pitaux Universitaires Henri-Mondor","ror":"https://ror.org/033yb0967","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210130325"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rodolphe Thi\u00e9baut","raw_affiliation_strings":["P\u00f4le de Sant\u00e9 Publique , CHU de Bordeaux, Pl. Am\u00e9lie Raba L\u00e9on, F-33000 Bordeaux ,","SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"P\u00f4le de Sant\u00e9 Publique , CHU de Bordeaux, Pl. Am\u00e9lie Raba L\u00e9on, F-33000 Bordeaux ,","institution_ids":["https://openalex.org/I3018323443","https://openalex.org/I4210112727"]},{"raw_affiliation_string":"SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","institution_ids":["https://openalex.org/I15057530"]},{"raw_affiliation_string":"SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I15057530","https://openalex.org/I4210106115"]},{"raw_affiliation_string":"VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,","institution_ids":["https://openalex.org/I4210119150","https://openalex.org/I4210130325","https://openalex.org/I197681013"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5137503367","display_name":"Boris P Hejblum","orcid":"https://orcid.org/0000-0003-0646-452X"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I197681013","display_name":"Universit\u00e9 Paris-Est Cr\u00e9teil","ror":"https://ror.org/05ggc9x40","country_code":"FR","type":"education","lineage":["https://openalex.org/I197681013"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]},{"id":"https://openalex.org/I4210119150","display_name":"Institut de Recherche Vaccinale","ror":"https://ror.org/02f9r3321","country_code":"FR","type":"facility","lineage":["https://openalex.org/I197681013","https://openalex.org/I4210116296","https://openalex.org/I4210119150"]},{"id":"https://openalex.org/I4210130325","display_name":"H\u00f4pitaux Universitaires Henri-Mondor","ror":"https://ror.org/033yb0967","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210130325"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Boris P Hejblum","raw_affiliation_strings":["SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,"],"raw_orcid":"https://orcid.org/0000-0003-0646-452X","affiliations":[{"raw_affiliation_string":"SISTM team, Centre INRIA de l'Universit\u00e9 de Bordeaux , 200 Av. de la Vieille Tour, F-33400 Talence, Gironde ,","institution_ids":["https://openalex.org/I15057530"]},{"raw_affiliation_string":"SISTM team, Inserm Bordeaux Population Health Research Center , UMR 1219, Univ. Bordeaux, 146 rue L\u00e9o Saignat, F-33000 Bordeaux, Gironde ,","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I15057530","https://openalex.org/I4210106115"]},{"raw_affiliation_string":"VRI, Vaccine Research Institute, H\u00f4pital Henri Mondor , 8 Rue du G\u00e9n\u00e9ral Sarrail, 94000 Cr\u00e9teil, F-94000 Cr\u00e9teil, Val-de-Marne ,","institution_ids":["https://openalex.org/I4210119150","https://openalex.org/I4210130325","https://openalex.org/I197681013"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74551652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.37720000743865967,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.37720000743865967,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.2987000048160553,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.17260000109672546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8794000148773193},{"id":"https://openalex.org/keywords/wald-test","display_name":"Wald test","score":0.7271000146865845},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6535999774932861},{"id":"https://openalex.org/keywords/statistic","display_name":"Statistic","score":0.5296000242233276},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.5216000080108643},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.49390000104904175},{"id":"https://openalex.org/keywords/test-statistic","display_name":"Test statistic","score":0.4853000044822693},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.41100001335144043},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.39430001378059387}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8794000148773193},{"id":"https://openalex.org/C203274628","wikidata":"https://www.wikidata.org/wiki/Q748664","display_name":"Wald test","level":3,"score":0.7271000146865845},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6535999774932861},{"id":"https://openalex.org/C89128539","wikidata":"https://www.wikidata.org/wiki/Q1949963","display_name":"Statistic","level":2,"score":0.5296000242233276},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.5216000080108643},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.49390000104904175},{"id":"https://openalex.org/C169857963","wikidata":"https://www.wikidata.org/wiki/Q1461038","display_name":"Test statistic","level":3,"score":0.4853000044822693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4424999952316284},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.41100001335144043},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.39430001378059387},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3898000121116638},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.3614000082015991},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.36039999127388},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.3587999939918518},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.35589998960494995},{"id":"https://openalex.org/C150921843","wikidata":"https://www.wikidata.org/wiki/Q1170431","display_name":"Resampling","level":2,"score":0.34290000796318054},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.34130001068115234},{"id":"https://openalex.org/C71743495","wikidata":"https://www.wikidata.org/wiki/Q2845210","display_name":"Power analysis","level":3,"score":0.3246999979019165},{"id":"https://openalex.org/C9483764","wikidata":"https://www.wikidata.org/wiki/Q585740","display_name":"Likelihood-ratio test","level":2,"score":0.31630000472068787},{"id":"https://openalex.org/C27403532","wikidata":"https://www.wikidata.org/wiki/Q5532474","display_name":"Generalized estimating equation","level":2,"score":0.29899999499320984},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2924000024795532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2924000024795532},{"id":"https://openalex.org/C103463560","wikidata":"https://www.wikidata.org/wiki/Q4456449","display_name":"Score test","level":3,"score":0.2883000075817108},{"id":"https://openalex.org/C183905921","wikidata":"https://www.wikidata.org/wiki/Q1038757","display_name":"Multiple comparisons problem","level":2,"score":0.2842000126838684},{"id":"https://openalex.org/C40696583","wikidata":"https://www.wikidata.org/wiki/Q989120","display_name":"Type I and type II errors","level":2,"score":0.26589998602867126},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.2596000134944916},{"id":"https://openalex.org/C2984324147","wikidata":"https://www.wikidata.org/wiki/Q3080021","display_name":"Gene selection","level":5,"score":0.2542000114917755}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D005910","descriptor_name":"Glioma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbag262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag262","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42218714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42218714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-05643532v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05643532","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2026, 27 (3), &#x27E8;10.1093/bib/bbag262&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13222529","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13222529/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag262","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4985361695289612}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1981509058","https://openalex.org/W2010457001","https://openalex.org/W2013223495","https://openalex.org/W2014994637","https://openalex.org/W2020859582","https://openalex.org/W2030603545","https://openalex.org/W2052825782","https://openalex.org/W2054211750","https://openalex.org/W2062125287","https://openalex.org/W2073783012","https://openalex.org/W2082503908","https://openalex.org/W2091560152","https://openalex.org/W2101536220","https://openalex.org/W2103017472","https://openalex.org/W2108828993","https://openalex.org/W2110065044","https://openalex.org/W2114104545","https://openalex.org/W2119927557","https://openalex.org/W2120865735","https://openalex.org/W2123060905","https://openalex.org/W2123850713","https://openalex.org/W2124061292","https://openalex.org/W2130410032","https://openalex.org/W2132308700","https://openalex.org/W2135465849","https://openalex.org/W2136850689","https://openalex.org/W2137526110","https://openalex.org/W2142160388","https://openalex.org/W2142628191","https://openalex.org/W2149199519","https://openalex.org/W2158323345","https://openalex.org/W2159482845","https://openalex.org/W2160450758","https://openalex.org/W2179438025","https://openalex.org/W2342621145","https://openalex.org/W2412547788","https://openalex.org/W2493031458","https://openalex.org/W2592264367","https://openalex.org/W2887032603","https://openalex.org/W2944521374","https://openalex.org/W2951230144","https://openalex.org/W2963315469","https://openalex.org/W2982288978","https://openalex.org/W2982513478","https://openalex.org/W3109541113","https://openalex.org/W4213067707","https://openalex.org/W4221039484"],"related_works":[],"abstract_inverted_index":{"Gene":[0],"set":[1],"analysis":[2],"evaluates":[3],"the":[4,31,44,65,69,79,87,103,154,164,177,186,191],"collective":[5],"impact":[6],"of":[7,9,14,33,46,68,136,156,166],"groups":[8],"genes":[10,157],"on":[11],"an":[12,134],"outcome":[13],"interest,":[15],"such":[16],"as":[17],"disease":[18],"occurrence.":[19],"By":[20],"incorporating":[21],"biological":[22],"knowledge":[23],"through":[24],"predefined":[25],"gene":[26,62],"sets,":[27],"this":[28,84],"approach":[29],"enhances":[30],"interpretability":[32],"results":[34],"and":[35,53,111,126,171],"improves":[36],"statistical":[37,143],"power":[38,144],"compared":[39,96,145],"with":[40,99,146],"gene-wise":[41],"analyses.":[42],"In":[43],"context":[45],"time-to-event":[47,88],"data,":[48],"existing":[49],"methods":[50,119,148],"are":[51],"limited":[52],"fail":[54],"to":[55,86,141,163],"account":[56],"for":[57,185,197],"potentially":[58],"strong":[59,66],"correlations":[60],"within":[61,78],"sets.":[63],"Given":[64],"performance":[67,98],"Generalized":[70],"Berk-Jones":[71],"(GBJ)":[72],"statistic,":[73,81],"which":[74],"effectively":[75],"incorporates":[76],"correlation":[77],"test":[80,170,174,193],"we":[82],"adapted":[83],"method":[85],"framework":[89],"using":[90],"a":[91],"Cox":[92],"model.":[93],"We":[94,115],"then":[95],"its":[97],"established":[100],"methods,":[101],"including":[102],"Cauchy,":[104],"Harmonic":[105],"Mean,":[106],"Wald":[107,169,192],"test,":[108,110,189],"global":[109,112,172,187],"boost":[113,173,188],"test.":[114],"further":[116],"benchmarked":[117],"these":[118],"in":[120,149,181,199],"two":[121],"different":[122],"real-world":[123],"datasets:":[124],"gliomas":[125],"breast":[127],"cancer.":[128],"Our":[129],"proposed":[130],"method,":[131],"sGBJ,":[132],"shows":[133],"overcontrol":[135],"Type":[137],"I":[138],"error,":[139],"leading":[140],"reduced":[142],"other":[147],"numerical":[150],"studies":[151],"particularly":[152],"when":[153],"number":[155,165],"is":[158],"greater":[159],"than":[160],"or":[161],"equal":[162],"observations.":[167],"The":[168],"generally":[175],"exhibited":[176],"highest":[178],"power,":[179],"except":[180],"very":[182],"high-correlation":[183],"settings":[184],"while":[190],"could":[194],"not":[195],"adjust":[196],"confounders":[198],"current":[200],"implementations.":[201]},"counts_by_year":[],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2026-06-01T00:00:00"}
