{"id":"https://openalex.org/W7162312305","doi":"https://doi.org/10.1093/bib/bbag254","title":"Rethinking bioinformatics in liquid\u2013liquid phase separation: data resources, predictive models, and an event-centric perspective","display_name":"Rethinking bioinformatics in liquid\u2013liquid phase separation: data resources, predictive models, and an event-centric perspective","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7162312305","doi":"https://doi.org/10.1093/bib/bbag254","pmid":"https://pubmed.ncbi.nlm.nih.gov/42184109"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag254","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag254","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5136951389","display_name":"Zi-long Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I114539943","display_name":"Zhejiang Chinese Medical University","ror":"https://ror.org/04epb4p87","country_code":"CN","type":"education","lineage":["https://openalex.org/I114539943"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-long Yuan","raw_affiliation_strings":["School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","institution_ids":["https://openalex.org/I114539943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136928748","display_name":"Bo Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I114539943","display_name":"Zhejiang Chinese Medical University","ror":"https://ror.org/04epb4p87","country_code":"CN","type":"education","lineage":["https://openalex.org/I114539943"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Wang","raw_affiliation_strings":["School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","institution_ids":["https://openalex.org/I114539943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101508336","display_name":"Yuehua Chen","orcid":"https://orcid.org/0000-0002-4646-4017"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-lu Chen","raw_affiliation_strings":["School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136931164","display_name":"Hao-qi Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao-qi Huang","raw_affiliation_strings":["School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100374441","display_name":"Bo Li","orcid":"https://orcid.org/0000-0002-5802-7519"},"institutions":[{"id":"https://openalex.org/I114539943","display_name":"Zhejiang Chinese Medical University","ror":"https://ror.org/04epb4p87","country_code":"CN","type":"education","lineage":["https://openalex.org/I114539943"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin-hao Li","raw_affiliation_strings":["School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","institution_ids":["https://openalex.org/I114539943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136984434","display_name":"Ahmed Zahoor","orcid":null},"institutions":[{"id":"https://openalex.org/I114539943","display_name":"Zhejiang Chinese Medical University","ror":"https://ror.org/04epb4p87","country_code":"CN","type":"education","lineage":["https://openalex.org/I114539943"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ahmed Zahoor","raw_affiliation_strings":["School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","institution_ids":["https://openalex.org/I114539943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082971300","display_name":"Liping Ren","orcid":"https://orcid.org/0000-0003-0636-7500"},"institutions":[{"id":"https://openalex.org/I31595395","display_name":"Chengdu University of Technology","ror":"https://ror.org/05pejbw21","country_code":"CN","type":"education","lineage":["https://openalex.org/I31595395"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liping Ren","raw_affiliation_strings":["School of Healthcare and Technology, Chengdu Neusoft University , No. 1 Dongruan Avenue, Qingchengshan Town, Dujiangyan District, Chengdu 611844, Sichuan ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Healthcare and Technology, Chengdu Neusoft University , No. 1 Dongruan Avenue, Qingchengshan Town, Dujiangyan District, Chengdu 611844, Sichuan ,","institution_ids":["https://openalex.org/I31595395"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136946972","display_name":"Mengze Du","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I31595395","display_name":"Chengdu University of Technology","ror":"https://ror.org/05pejbw21","country_code":"CN","type":"education","lineage":["https://openalex.org/I31595395"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mengze Du","raw_affiliation_strings":["School of Healthcare and Technology, Chengdu Neusoft University , No. 1 Dongruan Avenue, Qingchengshan Town, Dujiangyan District, Chengdu 611844, Sichuan ,","School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Healthcare and Technology, Chengdu Neusoft University , No. 1 Dongruan Avenue, Qingchengshan Town, Dujiangyan District, Chengdu 611844, Sichuan ,","institution_ids":["https://openalex.org/I31595395"]},{"raw_affiliation_string":"School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113219363","display_name":"Rui-Qin Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Rui-qin Fang","raw_affiliation_strings":["School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5136978468","display_name":"Lin Ning","orcid":"https://orcid.org/0000-0001-6374-8823"},"institutions":[{"id":"https://openalex.org/I114539943","display_name":"Zhejiang Chinese Medical University","ror":"https://ror.org/04epb4p87","country_code":"CN","type":"education","lineage":["https://openalex.org/I114539943"]},{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lin Ning","raw_affiliation_strings":["School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , No. 1 Chengdian Road, Kecheng District, Quzhou 324003, Zhejiang ,"],"raw_orcid":"https://orcid.org/0000-0001-6374-8823","affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, Sichuan ,","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University , 548 Binwen Road, Binjiang District, Hangzhou 310053, Zhejiang ,","institution_ids":["https://openalex.org/I114539943"]},{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , No. 1 Chengdian Road, Kecheng District, Quzhou 324003, Zhejiang ,","institution_ids":["https://openalex.org/I4210123686"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5113219363","https://openalex.org/A5136946972","https://openalex.org/A5136978468"],"corresponding_institution_ids":["https://openalex.org/I114539943","https://openalex.org/I150229711","https://openalex.org/I31595395","https://openalex.org/I4210123686"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.45918617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11841","display_name":"Nuclear Structure and Function","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12065","display_name":"Hippo pathway signaling and YAP/TAZ","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8510000109672546},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5357999801635742},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4997999966144562},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.43959999084472656},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.3921000063419342},{"id":"https://openalex.org/keywords/limit","display_name":"Limit (mathematics)","score":0.36739999055862427},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.3580999970436096}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8510000109672546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7303000092506409},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5357999801635742},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4997999966144562},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4875999987125397},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4521999955177307},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.43959999084472656},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42669999599456787},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.3921000063419342},{"id":"https://openalex.org/C151201525","wikidata":"https://www.wikidata.org/wiki/Q177239","display_name":"Limit (mathematics)","level":2,"score":0.36739999055862427},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.3580999970436096},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2928999960422516},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.2838999927043915},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.27869999408721924},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27810001373291016},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.27709999680519104},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.25209999084472656},{"id":"https://openalex.org/C43091099","wikidata":"https://www.wikidata.org/wiki/Q1067788","display_name":"Through-the-lens metering","level":3,"score":0.2517000138759613},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2517000138759613},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.2515999972820282},{"id":"https://openalex.org/C44280652","wikidata":"https://www.wikidata.org/wiki/Q104837","display_name":"Phase (matter)","level":2,"score":0.2513999938964844}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098412","descriptor_name":"Predictive Learning Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098412","descriptor_name":"Predictive Learning Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098412","descriptor_name":"Predictive Learning Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag254","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42184109","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42184109","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13200548","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13200548/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag254","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1642319838","display_name":null,"funder_award_id":"62372088","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4153142330","display_name":null,"funder_award_id":"62501110","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8106115898","display_name":null,"funder_award_id":"62501117","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8609985311","display_name":null,"funder_award_id":"2024M750367","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":191,"referenced_works":["https://openalex.org/W1678356000","https://openalex.org/W1952608303","https://openalex.org/W1984794455","https://openalex.org/W1991252559","https://openalex.org/W2054352933","https://openalex.org/W2064675550","https://openalex.org/W2085978470","https://openalex.org/W2087347434","https://openalex.org/W2109109045","https://openalex.org/W2112796928","https://openalex.org/W2120156669","https://openalex.org/W2131856634","https://openalex.org/W2139995722","https://openalex.org/W2158787690","https://openalex.org/W2425405879","https://openalex.org/W2566521622","https://openalex.org/W2590568317","https://openalex.org/W2756821926","https://openalex.org/W2786469974","https://openalex.org/W2808845633","https://openalex.org/W2810866092","https://openalex.org/W2911964244","https://openalex.org/W2914907359","https://openalex.org/W2939777553","https://openalex.org/W2955829592","https://openalex.org/W2966973269","https://openalex.org/W2971594646","https://openalex.org/W2972989379","https://openalex.org/W2977849281","https://openalex.org/W2980567099","https://openalex.org/W2980646921","https://openalex.org/W2991067665","https://openalex.org/W2996092187","https://openalex.org/W3085173862","https://openalex.org/W3099323319","https://openalex.org/W3112123143","https://openalex.org/W3120505220","https://openalex.org/W3120648484","https://openalex.org/W3127087732","https://openalex.org/W3128708278","https://openalex.org/W3130281988","https://openalex.org/W3138274236","https://openalex.org/W3143253488","https://openalex.org/W3146944767","https://openalex.org/W3163267315","https://openalex.org/W3171072400","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3178621961","https://openalex.org/W3185058626","https://openalex.org/W3186179742","https://openalex.org/W3190135694","https://openalex.org/W3201539595","https://openalex.org/W3208249086","https://openalex.org/W3208402765","https://openalex.org/W3208422419","https://openalex.org/W4205392984","https://openalex.org/W4211051645","https://openalex.org/W4212769969","https://openalex.org/W4212848381","https://openalex.org/W4220933909","https://openalex.org/W4224212488","https://openalex.org/W4225009860","https://openalex.org/W4239510810","https://openalex.org/W4249920046","https://openalex.org/W4281490610","https://openalex.org/W4281613736","https://openalex.org/W4283463448","https://openalex.org/W4292263320","https://openalex.org/W4296779471","https://openalex.org/W4300690897","https://openalex.org/W4309899522","https://openalex.org/W4310155519","https://openalex.org/W4311860438","https://openalex.org/W4313340038","https://openalex.org/W4313405472","https://openalex.org/W4318981445","https://openalex.org/W4319454332","https://openalex.org/W4324151685","https://openalex.org/W4327550249","https://openalex.org/W4362523846","https://openalex.org/W4362673600","https://openalex.org/W4367180071","https://openalex.org/W4376254147","https://openalex.org/W4376959496","https://openalex.org/W4378895321","https://openalex.org/W4379051735","https://openalex.org/W4379380285","https://openalex.org/W4379769627","https://openalex.org/W4382363582","https://openalex.org/W4382893961","https://openalex.org/W4382937147","https://openalex.org/W4384199223","https://openalex.org/W4385295567","https://openalex.org/W4385406356","https://openalex.org/W4385794403","https://openalex.org/W4386083644","https://openalex.org/W4386161992","https://openalex.org/W4386318858","https://openalex.org/W4386498559","https://openalex.org/W4386692226","https://openalex.org/W4387841998","https://openalex.org/W4388024559","https://openalex.org/W4389043167","https://openalex.org/W4389480378","https://openalex.org/W4389490952","https://openalex.org/W4390096274","https://openalex.org/W4390885715","https://openalex.org/W4390946589","https://openalex.org/W4391379655","https://openalex.org/W4391655684","https://openalex.org/W4392018880","https://openalex.org/W4392282913","https://openalex.org/W4392561034","https://openalex.org/W4392602420","https://openalex.org/W4392919048","https://openalex.org/W4393189158","https://openalex.org/W4393410976","https://openalex.org/W4393530642","https://openalex.org/W4393866584","https://openalex.org/W4393943448","https://openalex.org/W4394715402","https://openalex.org/W4394815666","https://openalex.org/W4394841687","https://openalex.org/W4399272959","https://openalex.org/W4400102178","https://openalex.org/W4400503991","https://openalex.org/W4400869919","https://openalex.org/W4401030854","https://openalex.org/W4401071387","https://openalex.org/W4401387454","https://openalex.org/W4401505981","https://openalex.org/W4402057714","https://openalex.org/W4402209078","https://openalex.org/W4402521665","https://openalex.org/W4402908277","https://openalex.org/W4403335414","https://openalex.org/W4403446595","https://openalex.org/W4403603440","https://openalex.org/W4403781819","https://openalex.org/W4403907284","https://openalex.org/W4404006041","https://openalex.org/W4404124421","https://openalex.org/W4404568659","https://openalex.org/W4405269076","https://openalex.org/W4405276158","https://openalex.org/W4407774391","https://openalex.org/W4408139692","https://openalex.org/W4408363679","https://openalex.org/W4408364096","https://openalex.org/W4408417595","https://openalex.org/W4408829264","https://openalex.org/W4409283701","https://openalex.org/W4409589370","https://openalex.org/W4410020031","https://openalex.org/W4410139515","https://openalex.org/W4410332095","https://openalex.org/W4410706040","https://openalex.org/W4410794241","https://openalex.org/W4411178782","https://openalex.org/W4411328649","https://openalex.org/W4412104380","https://openalex.org/W4412132067","https://openalex.org/W4412417081","https://openalex.org/W4412643919","https://openalex.org/W4412907950","https://openalex.org/W4413105176","https://openalex.org/W4413113711","https://openalex.org/W4413113899","https://openalex.org/W4413323075","https://openalex.org/W4413325250","https://openalex.org/W4413336899","https://openalex.org/W4414007665","https://openalex.org/W4414042287","https://openalex.org/W4414064795","https://openalex.org/W4414753608","https://openalex.org/W4414804788","https://openalex.org/W4415021999","https://openalex.org/W4415127229","https://openalex.org/W4415200896","https://openalex.org/W4415707284","https://openalex.org/W4415805323","https://openalex.org/W4416274228","https://openalex.org/W4416372769","https://openalex.org/W4416451646","https://openalex.org/W4416786858","https://openalex.org/W4416965523","https://openalex.org/W4417114898","https://openalex.org/W4417304786","https://openalex.org/W4417497730","https://openalex.org/W7128515994"],"related_works":[],"abstract_inverted_index":{"Liquid-liquid":[0],"phase":[1,180],"separation":[2],"(LLPS)":[3],"has":[4],"emerged":[5],"as":[6],"a":[7,71,145,184],"fundamental":[8,146],"mechanism":[9],"underlying":[10],"the":[11,59,153],"formation":[12],"and":[13,19,27,32,38,50,73,79,87,100,123,134,152,178,191,198],"regulation":[14],"of":[15,47,52,76,158],"membraneless":[16],"cellular":[17],"compartments":[18],"is":[20],"increasingly":[21],"implicated":[22],"in":[23,94],"diverse":[24],"physiological":[25],"processes":[26],"diseases.":[28],"Alongside":[29],"rapid":[30],"experimental":[31],"high-throughput":[33],"advances,":[34,142],"bioinformatics":[35,77],"data":[36,150],"resources":[37,78],"computational":[39,61,110,192],"models":[40,111,193],"have":[41],"expanded":[42],"substantially,":[43],"enabling":[44],"systematic":[45],"cataloguing":[46],"LLPS-associated":[48],"components":[49],"prediction":[51,115],"phase-separation":[53],"behavior":[54],"from":[55,127,168],"molecular":[56,174],"features.":[57],"However,":[58],"resulting":[60],"landscape":[62],"remains":[63],"highly":[64],"fragmented.":[65],"In":[66],"this":[67],"review,":[68],"we":[69,143],"provide":[70],"comprehensive":[72],"critical":[74],"synthesis":[75],"predictive":[80],"modelling":[81],"approaches":[82],"for":[83,187],"LLPS.":[84],"We":[85,107,161],"examine":[86],"compare":[88],"major":[89],"LLPS":[90,114,159,189],"databases,":[91],"highlighting":[92],"differences":[93],"evidence":[95],"types,":[96],"curation":[97],"strategies,":[98],"coverage,":[99],"cross-resource":[101],"inconsistencies":[102],"that":[103,163,171],"limit":[104],"integrative":[105],"analysis.":[106],"then":[108],"survey":[109],"across":[112],"core":[113],"tasks,":[116],"encompassing":[117],"more":[118],"than":[119],"40":[120],"representative":[121],"algorithms":[122],"tracing":[124],"methodological":[125],"evolution":[126],"classical":[128],"machine":[129],"learning":[130,133],"to":[131],"deep":[132],"large":[135],"language":[136],"model-based":[137],"frameworks.":[138],"By":[139],"integrating":[140],"these":[141],"identify":[144],"mismatch":[147],"between":[148],"molecule-centric":[149],"abstractions":[151],"inherently":[154],"multicomponent,":[155],"context-dependent":[156],"organization":[157],"phenomena.":[160],"argue":[162],"future":[164],"progress":[165],"may":[166],"benefit":[167],"event-centric":[169],"frameworks":[170],"explicitly":[172],"represent":[173],"assemblies,":[175],"contextual":[176],"conditions":[177],"observable":[179],"behaviors,":[181],"thereby":[182],"providing":[183],"coherent":[185],"foundation":[186],"next-generation":[188],"datasets":[190],"with":[194],"improved":[195],"mechanistic":[196],"interpretability":[197],"translational":[199],"relevance.":[200]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-05-26T00:00:00"}
