{"id":"https://openalex.org/W7162339198","doi":"https://doi.org/10.1093/bib/bbag249","title":"Comparative review of artificial intelligence for transcriptomic biomarker discovery in coronavirus disease 2019 (COVID-19)","display_name":"Comparative review of artificial intelligence for transcriptomic biomarker discovery in coronavirus disease 2019 (COVID-19)","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7162339198","doi":"https://doi.org/10.1093/bib/bbag249","pmid":"https://pubmed.ncbi.nlm.nih.gov/42184107"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag249","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108948769","display_name":"Li Ying Khoo","orcid":null},"institutions":[{"id":"https://openalex.org/I33849332","display_name":"University of Malaya","ror":"https://ror.org/00rzspn62","country_code":"MY","type":"education","lineage":["https://openalex.org/I33849332"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Li Ying Khoo","raw_affiliation_strings":["Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya , Lembah Pantai, 50603 Kuala Lumpur ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya , Lembah Pantai, 50603 Kuala Lumpur ,","institution_ids":["https://openalex.org/I33849332"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102767936","display_name":"Sarinder K. Dhillon","orcid":null},"institutions":[{"id":"https://openalex.org/I33849332","display_name":"University of Malaya","ror":"https://ror.org/00rzspn62","country_code":"MY","type":"education","lineage":["https://openalex.org/I33849332"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Sarinder Kaur Dhillon","raw_affiliation_strings":["Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya , Lembah Pantai, 50603 Kuala Lumpur ,"],"raw_orcid":"https://orcid.org/0000-0003-1922-2044","affiliations":[{"raw_affiliation_string":"Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya , Lembah Pantai, 50603 Kuala Lumpur ,","institution_ids":["https://openalex.org/I33849332"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5102767936"],"corresponding_institution_ids":["https://openalex.org/I33849332"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.46032309,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8080000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8080000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.0560000017285347,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10041","display_name":"COVID-19 Clinical Research Studies","score":0.03420000150799751,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.5723000168800354},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5252000093460083},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.48820000886917114},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.48590001463890076},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.41339999437332153},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3686999976634979},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.36160001158714294},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.3481000065803528}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5945000052452087},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.5723000168800354},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5273000001907349},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5252000093460083},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.48820000886917114},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.48590001463890076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4424999952316284},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.41339999437332153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3822000026702881},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3686999976634979},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.36160001158714294},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.3481000065803528},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.33000001311302185},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.3221000134944916},{"id":"https://openalex.org/C3020000205","wikidata":"https://www.wikidata.org/wiki/Q2412849","display_name":"Narrative review","level":2,"score":0.31060001254081726},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.30809998512268066},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3034000098705292},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.3028999865055084},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3027999997138977},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.28929999470710754},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.2768000066280365},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.2766999900341034},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.27300000190734863},{"id":"https://openalex.org/C178315738","wikidata":"https://www.wikidata.org/wiki/Q603441","display_name":"Bibliometrics","level":2,"score":0.26109999418258667},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.25360000133514404}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42184107","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42184107","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13200535","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13200535/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7568249702453613,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321709","display_name":"Ministry of Higher Education, Malaysia","ror":"https://ror.org/05mcs2t73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":103,"referenced_works":["https://openalex.org/W1977868384","https://openalex.org/W2096192437","https://openalex.org/W2236822143","https://openalex.org/W2603756957","https://openalex.org/W2910705748","https://openalex.org/W2947928171","https://openalex.org/W2982010568","https://openalex.org/W2982580298","https://openalex.org/W3034560014","https://openalex.org/W3036750745","https://openalex.org/W3037163353","https://openalex.org/W3091839106","https://openalex.org/W3092581351","https://openalex.org/W3098474649","https://openalex.org/W3116286104","https://openalex.org/W3119703860","https://openalex.org/W3120796591","https://openalex.org/W3126904753","https://openalex.org/W3144611861","https://openalex.org/W3152563552","https://openalex.org/W3176496038","https://openalex.org/W3185119559","https://openalex.org/W3189284249","https://openalex.org/W3193795275","https://openalex.org/W3194525918","https://openalex.org/W3201609912","https://openalex.org/W3202610744","https://openalex.org/W3204794075","https://openalex.org/W4214726853","https://openalex.org/W4221013844","https://openalex.org/W4225145883","https://openalex.org/W4225716729","https://openalex.org/W4225880473","https://openalex.org/W4229001182","https://openalex.org/W4281717988","https://openalex.org/W4283263183","https://openalex.org/W4285794000","https://openalex.org/W4289544781","https://openalex.org/W4294953439","https://openalex.org/W4308045244","https://openalex.org/W4308722092","https://openalex.org/W4309940752","https://openalex.org/W4310533938","https://openalex.org/W4311202133","https://openalex.org/W4313280127","https://openalex.org/W4313319343","https://openalex.org/W4313463763","https://openalex.org/W4313908931","https://openalex.org/W4317565748","https://openalex.org/W4320733020","https://openalex.org/W4321184225","https://openalex.org/W4321350600","https://openalex.org/W4321434822","https://openalex.org/W4323043856","https://openalex.org/W4361007344","https://openalex.org/W4361008938","https://openalex.org/W4362606584","https://openalex.org/W4365515099","https://openalex.org/W4378349423","https://openalex.org/W4378838672","https://openalex.org/W4384500332","https://openalex.org/W4385576721","https://openalex.org/W4385978018","https://openalex.org/W4386305688","https://openalex.org/W4386438865","https://openalex.org/W4386890586","https://openalex.org/W4388913510","https://openalex.org/W4391381070","https://openalex.org/W4392014371","https://openalex.org/W4394724342","https://openalex.org/W4394741326","https://openalex.org/W4396517655","https://openalex.org/W4398171328","https://openalex.org/W4399070957","https://openalex.org/W4399332294","https://openalex.org/W4399433760","https://openalex.org/W4399760340","https://openalex.org/W4399882764","https://openalex.org/W4400041659","https://openalex.org/W4401503596","https://openalex.org/W4402977982","https://openalex.org/W4403047512","https://openalex.org/W4403099947","https://openalex.org/W4403789768","https://openalex.org/W4404578273","https://openalex.org/W4405546077","https://openalex.org/W4406233501","https://openalex.org/W4406728221","https://openalex.org/W4407877295","https://openalex.org/W4408245046","https://openalex.org/W4408858259","https://openalex.org/W4409147844","https://openalex.org/W4409151975","https://openalex.org/W4409155163","https://openalex.org/W4409212286","https://openalex.org/W4409890980","https://openalex.org/W4410957636","https://openalex.org/W4415929027","https://openalex.org/W4416059045","https://openalex.org/W4416069798","https://openalex.org/W7116843807","https://openalex.org/W7124497321","https://openalex.org/W7125967877"],"related_works":[],"abstract_inverted_index":{"The":[0,134,250],"Coronavirus":[1],"Disease":[2],"2019":[3,116],"(COVID-19)":[4],"pandemic":[5,224,308],"has":[6],"highlighted":[7],"the":[8,18,24,199,259,275],"significance":[9],"of":[10,20,27,55,57,71,102,129,136,142,202,247,252,277,281],"reliable":[11],"molecular":[12],"biomarkers":[13],"in":[14,60,79,163,189,236,242,294],"clinical":[15],"use.":[16],"Despite":[17],"popularity":[19],"traditional":[21],"statistical":[22],"approaches,":[23],"high":[25],"dimensionality":[26],"transcriptomic":[28,62,76],"data":[29,164,270,282],"presents":[30],"challenges":[31,293],"for":[32,46,75,95,125,227],"these":[33,48,58,72,186],"conventional":[34],"methods.":[35],"While":[36],"artificial":[37],"intelligence":[38],"(AI)":[39],"algorithms":[40],"have":[41],"emerged":[42],"as":[43,170,172,206],"highly":[44],"advantageous":[45],"handling":[47],"complex":[49],"datasets,":[50],"there":[51],"is":[52,301],"a":[53,92,126,207],"lack":[54,276],"evaluation":[56,70],"approaches":[59],"COVID-19":[61,80,138,248],"studies.":[63],"This":[64],"review":[65,121,221],"aims":[66],"to":[67,117,210,288],"provide":[68],"an":[69,181],"studies":[73,124,238,254],"employed":[74],"biomarker":[77],"discovery":[78],"using":[81],"AI,":[82],"assessing":[83],"their":[84],"study":[85,190],"designs,":[86],"methodologies,":[87],"and":[88,112,150,156,168,176,244,269,284,292,316],"outcomes.":[89],"Based":[90],"on":[91,261],"comprehensive":[93],"search":[94],"literature":[96],"across":[97],"five":[98],"databases":[99],"including":[100,306],"Web":[101],"Science":[103],"Core":[104],"Collection,":[105],"Scopus,":[106],"PubMed/MEDLINE,":[107],"IEEE":[108],"Xplore":[109],"Digital":[110],"Library,":[111],"LitCovid":[113],"from":[114,313],"December":[115],"March":[118],"2025,":[119],"this":[120,220],"selected":[122],"63":[123],"narrative":[127],"synthesis":[128],"four":[130],"key":[131],"sections:":[132],"(i)":[133],"Landscape":[135],"AI-Driven":[137,147],"Transcriptomics,":[139],"(ii)":[140],"Limitations":[141],"Studies,":[143],"(iii)":[144],"A":[145],"Proposed":[146],"Transcriptomics":[148],"Framework,":[149],"(iv)":[151],"Clinical":[152],"Translation":[153],"Challenges,":[154],"Opportunities,":[155],"Future":[157],"Directions.":[158],"Our":[159],"analysis":[160],"revealed":[161],"limitations":[162,188,251],"quality,":[165],"sample":[166,257],"size,":[167],"heterogeneity,":[169],"well":[171],"methodologies":[173],"regarding":[174],"validation":[175,286],"interpretability.":[177,296],"Thus,":[178],"we":[179],"proposed":[180],"evidence-informed":[182,298],"workflow":[183],"that":[184],"addresses":[185],"current":[187,211,253],"design,":[191],"while":[192],"acknowledging":[193,303],"real-world":[194,304],"constraints.":[195],"We":[196],"further":[197],"discuss":[198],"emerging":[200,229,320],"potential":[201,325],"agentic":[203,321],"AI":[204,322],"systems":[205,323],"promising":[208],"solution":[209],"limitations.":[212],"By":[213],"bridging":[214],"methodological":[215],"gaps":[216],"with":[217,319],"translation":[218],"considerations,":[219],"can":[222],"enhance":[223],"response":[225],"strategies":[226],"future":[228],"infectious":[230],"diseases.":[231],"Key":[232],"Points":[233],"Applications":[234],"observed":[235],"reviewed":[237],"mainly":[239],"included":[240,255],"applications":[241],"diagnosis":[243],"severity":[245],"stratification":[246],"patients.":[249],"small":[256,307],"sizes,":[258,310],"reliance":[260],"public":[262],"datasets":[263],"lacking":[264],"detailed":[265],"metadata,":[266],"batch":[267],"effects":[268],"heterogeneity":[271],"reducing":[272],"model":[273,295],"robustness,":[274],"external":[278],"validation,":[279],"risks":[280],"leakage":[283],"circular":[285],"leading":[287],"inflated":[289],"performance":[290],"metrics,":[291],"An":[297],"AI-driven":[299],"framework":[300],"proposed,":[302],"constraints":[305],"cohort":[309],"domain":[311],"shift":[312],"viral":[314],"evolution,":[315],"resource-limited":[317],"settings,":[318],"offering":[324],"solutions.":[326]},"counts_by_year":[],"updated_date":"2026-08-24T07:32:12.397491","created_date":"2026-05-26T00:00:00"}
