{"id":"https://openalex.org/W7161724612","doi":"https://doi.org/10.1093/bib/bbag241","title":"DCVBin: a novel binning method for single-sample metagenomes based on DNA language model and variational autoencoder","display_name":"DCVBin: a novel binning method for single-sample metagenomes based on DNA language model and variational autoencoder","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7161724612","doi":"https://doi.org/10.1093/bib/bbag241","pmid":"https://pubmed.ncbi.nlm.nih.gov/42153323"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag241","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag241","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108047889","display_name":"Yi-Xiang Wang","orcid":"https://orcid.org/0000-0001-5697-0717"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210086659","display_name":"Jilin Jianzhu University","ror":"https://ror.org/002hbfc50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210086659"]},{"id":"https://openalex.org/I4210102505","display_name":"Jilin Engineering Normal University","ror":"https://ror.org/018gks972","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210102505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyuan Wang","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University , Qianjin Street No. 3003, 130000, Changchun, Jilin ,","School of Electrical and Information Engineering, Jilin Engineering Normal University , Kaixuan Road No. 3050, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University , Qianjin Street No. 3003, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210086659"]},{"raw_affiliation_string":"School of Electrical and Information Engineering, Jilin Engineering Normal University , Kaixuan Road No. 3050, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I4210102505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136463053","display_name":"Yifan Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yifan Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066989337","display_name":"F M Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Fu Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fu Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136493627","display_name":"Tao Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Hou","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136454415","display_name":"Siming Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siming Chen","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136490557","display_name":"Yun Liu","orcid":"https://orcid.org/0000-0003-0883-2453"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengxi Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yun Liu","orcid":"https://orcid.org/0000-0003-0883-2453"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yun Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":"https://orcid.org/0000-0003-0883-2453","affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":null,"display_name":"Yun Liu","orcid":"https://orcid.org/0000-0003-0883-2453"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Liu","raw_affiliation_strings":["College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,"],"raw_orcid":"https://orcid.org/0000-0003-0883-2453","affiliations":[{"raw_affiliation_string":"College of Communication Engineering, Jilin University , Remin Street No. 5988, 130000, Changchun, Jilin ,","institution_ids":["https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5136463053"],"corresponding_institution_ids":["https://openalex.org/I194450716"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.53760208,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.27000001072883606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.27000001072883606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.16760000586509705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07930000126361847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8428000211715698},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.7721999883651733},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.6769000291824341},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5703999996185303},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5389999747276306},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37130001187324524}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8428000211715698},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.7721999883651733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7121000289916992},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.6769000291824341},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.578499972820282},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5703999996185303},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5389999747276306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.446399986743927},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37130001187324524},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.36329999566078186},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3197999894618988},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.31679999828338623},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.30559998750686646},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2989000082015991},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.29649999737739563},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2720000147819519},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.2540999948978424}],"mesh":[{"descriptor_ui":"D000098430","descriptor_name":"Clustering Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098430","descriptor_name":"Clustering Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag241","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42153323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42153323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13184533","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13184533/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag241","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6842284061","display_name":null,"funder_award_id":"62303193","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1539550196","https://openalex.org/W1562379206","https://openalex.org/W1841679016","https://openalex.org/W1966816212","https://openalex.org/W2029082483","https://openalex.org/W2069689025","https://openalex.org/W2164327068","https://openalex.org/W2261059368","https://openalex.org/W2509930204","https://openalex.org/W2543000715","https://openalex.org/W2569903275","https://openalex.org/W2745006471","https://openalex.org/W2802216404","https://openalex.org/W2805885226","https://openalex.org/W2808457437","https://openalex.org/W2897249806","https://openalex.org/W2910615673","https://openalex.org/W2938868597","https://openalex.org/W2986925300","https://openalex.org/W2991615383","https://openalex.org/W3011335316","https://openalex.org/W3014810983","https://openalex.org/W3092478740","https://openalex.org/W3109460291","https://openalex.org/W3120084484","https://openalex.org/W3142515935","https://openalex.org/W3164037858","https://openalex.org/W3187790888","https://openalex.org/W4200589006","https://openalex.org/W4221065320","https://openalex.org/W4221079230","https://openalex.org/W4313340445","https://openalex.org/W4318486115","https://openalex.org/W4382537366","https://openalex.org/W4385302529","https://openalex.org/W4389606868","https://openalex.org/W4408845324","https://openalex.org/W4410974032"],"related_works":[],"abstract_inverted_index":{"DNA":[0,11,76,86],"contigs":[1,12,66],"binning":[2,13,67,140],"is":[3,38,107,120,148,156,174],"necessary":[4],"to":[5,89,176],"reconstruct":[6],"metagenome-assembled":[7],"genomes.":[8],"Current":[9],"metagenomic":[10,65,139],"methods":[14],"often":[15],"leverage":[16],"coverage":[17,36],"profiles":[18],"across":[19],"multiple":[20],"related":[21],"metagenomes":[22,163,185],"and":[23,141,169,186],"have":[24],"demonstrated":[25],"strong":[26],"performance":[27,41],"on":[28,84,128,158],"co-assembled":[29],"contigs.":[30],"However,":[31],"in":[32,114,179],"single-sample":[33,64,138],"scenarios":[34],"where":[35],"information":[37],"rare,":[39],"their":[40],"drops":[42],"significantly,":[43],"limiting":[44],"the":[45,51,111,116],"in-depth":[46],"development":[47],"of":[48,118,161,191],"metagenomics":[49],"at":[50],"individual":[52],"sample":[53],"level.":[54],"To":[55],"address":[56],"this":[57],"issue,":[58],"we":[59],"propose":[60],"DCVBin,":[61],"a":[62,75,85,103,151,159,189],"novel":[63],"method":[68],"that":[69,134,155],"incorporates":[70],"semantic":[71,93],"features":[72],"extracted":[73],"from":[74,164],"language":[77,87],"model.":[78],"Specifically,":[79],"our":[80],"approach":[81],"continues":[82],"pretraining":[83],"model":[88],"capture":[90],"more":[91],"domain-specific":[92],"representations,":[94],"which":[95,115],"are":[96],"then":[97],"integrated":[98],"with":[99,166],"4-mer":[100],"frequencies":[101],"using":[102,110,183],"variational":[104],"autoencoder.":[105],"Clustering":[106],"subsequently":[108],"performed":[109],"k-means":[112],"algorithm,":[113],"number":[117],"clusters":[119],"determined":[121],"by":[122],"single":[123],"copy":[124],"genes.":[125],"Experimental":[126],"results":[127],"six":[129],"publicly":[130],"available":[131],"datasets":[132],"demonstrate":[133],"DCVBin":[135,147],"achieves":[136],"high-accuracy":[137],"outperforms":[142],"other":[143],"state-of-the-art":[144],"methods.":[145],"Furthermore,":[146],"included":[149],"into":[150],"disease":[152],"diagnostic":[153],"framework":[154,173],"evaluated":[157],"cohort":[160],"gut":[162,184],"people":[165],"colorectal":[167,181],"cancer":[168,182],"healthy":[170],"people.":[171],"The":[172],"shown":[175],"be":[177],"accurate":[178],"predicting":[180],"has":[187],"identified":[188],"list":[190],"potential":[192],"microbial":[193],"biomarkers.":[194]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2026-05-20T00:00:00"}
