{"id":"https://openalex.org/W7161630641","doi":"https://doi.org/10.1093/bib/bbag236","title":"Decoding extremophiles: insights from bioinformatics, machine learning, and data-driven approaches","display_name":"Decoding extremophiles: insights from bioinformatics, machine learning, and data-driven approaches","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7161630641","doi":"https://doi.org/10.1093/bib/bbag236","pmid":"https://pubmed.ncbi.nlm.nih.gov/42153318"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag236","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag236","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Maria N Chasapi","orcid":"https://orcid.org/0009-0009-0336-0515"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["GR","SA"],"is_corresponding":false,"raw_author_name":"Maria N Chasapi","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":"https://orcid.org/0009-0009-0336-0515","affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Nicholas Kontis","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Nicholas Kontis","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Robert Lehmann","orcid":"https://orcid.org/0000-0001-7071-4226"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Robert Lehmann","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":"https://orcid.org/0000-0001-7071-4226","affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ruqaiya Tasneem","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092980","display_name":"National Institute of Animal Biotechnology","ror":"https://ror.org/00f6a9h42","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210092980"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ruqaiya Tasneem","raw_affiliation_strings":["National Institute of Animal Biotechnology (NIAB), Opp. Journalist Colony, Near Gowlidoddy, Extended Q City Road, Gachibowli, Hyderabad 500032, Telangana ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Animal Biotechnology (NIAB), Opp. Journalist Colony, Near Gowlidoddy, Extended Q City Road, Gachibowli, Hyderabad 500032, Telangana ,","institution_ids":["https://openalex.org/I4210092980"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Niketan S Patel","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Niketan S Patel","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sumeer A Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Sumeer A Khan","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xabier Mart\u00ednez de Morentin","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xabier Mart\u00ednez de Morentin","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Iro N Chasapi","orcid":null},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Iro N Chasapi","raw_affiliation_strings":["Department of Informatics and Telecommunications, National and Kapodistrian University of Athens , Panepistimioupolis, Ilisia, 16122 Athens ,","Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics and Telecommunications, National and Kapodistrian University of Athens , Panepistimioupolis, Ilisia, 16122 Athens ,","institution_ids":["https://openalex.org/I200777214"]},{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Eleni Aplakidou","orcid":"https://orcid.org/0009-0002-0737-4817"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Eleni Aplakidou","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School , Voutes, Heraklion 70013 ,","Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":"https://orcid.org/0009-0002-0737-4817","affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School , Voutes, Heraklion 70013 ,","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Alexandros Galaras","orcid":null},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Alexandros Galaras","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lila Aldakheel","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Lila Aldakheel","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Minjing Su","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Minjing Su","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Fotis A Baltoumas","orcid":null},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fotis A Baltoumas","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kasthuri Venkateswaran","orcid":null},"institutions":[{"id":"https://openalex.org/I24571045","display_name":"University of North Dakota","ror":"https://ror.org/04a5szx83","country_code":"US","type":"education","lineage":["https://openalex.org/I24571045"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kasthuri Venkateswaran","raw_affiliation_strings":["Department of Space Studies, University of North Dakota , Grand Forks 4149 University Avenue, Grand Forks, ND 58202ND 58202-9008, P 701.777.2480 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Space Studies, University of North Dakota , Grand Forks 4149 University Avenue, Grand Forks, ND 58202ND 58202-9008, P 701.777.2480 ,","institution_ids":["https://openalex.org/I24571045"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Vincenzo Lagani","orcid":null},"institutions":[{"id":"https://openalex.org/I183003952","display_name":"Ilia State University","ror":"https://ror.org/051qn8h41","country_code":"GE","type":"education","lineage":["https://openalex.org/I183003952"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["GE","SA"],"is_corresponding":false,"raw_author_name":"Vincenzo Lagani","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Institute of Chemical Biology, Ilia State University , 3/5 K. Cholokashvili Ave, Tbilisi 0162 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Institute of Chemical Biology, Ilia State University , 3/5 K. Cholokashvili Ave, Tbilisi 0162 ,","institution_ids":["https://openalex.org/I183003952"]}]},{"author_position":"middle","author":{"id":null,"display_name":"David G\u00f3mez-Cabrero","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"David G\u00f3mez-Cabrero","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jesper Tegn\u00e9r","orcid":null},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","SE"],"is_corresponding":false,"raw_author_name":"Jesper Tegn\u00e9r","raw_affiliation_strings":["Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Computer, Electrical and Mathematical Sciences and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , 23955-6900 Thuwal ,","Science for Life Laboratory, Karolinska Institutet , Tomtebodavagen 23A, SE-17165 Solna ,","Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska University Hospital , Visiongatan 18, SE-171 76 Stockholm ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , 23955-6900 Thuwal ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Science for Life Laboratory, Karolinska Institutet , Tomtebodavagen 23A, SE-17165 Solna ,","institution_ids":["https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska University Hospital , Visiongatan 18, SE-171 76 Stockholm ,","institution_ids":["https://openalex.org/I1335113835"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Georgios A Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I4210113480","display_name":"Mohamed bin Zayed University of Artificial Intelligence","ror":"https://ror.org/0258gkt32","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210113480"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["AE","GR"],"is_corresponding":false,"raw_author_name":"Georgios A Pavlopoulos","raw_affiliation_strings":["Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI) , Building 1B, Masdar City, SE45 05, Abu Dhabi ,","Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,"],"raw_orcid":"https://orcid.org/0000-0002-4577-8276","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI) , Building 1B, Masdar City, SE45 05, Abu Dhabi ,","institution_ids":["https://openalex.org/I4210113480"]},{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Str., Vari, 16672 ,","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"last","author":{"id":null,"display_name":"Alexandre Soares Rosado","orcid":"https://orcid.org/0000-0001-5135-1394"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Alexandre Soares Rosado","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,"],"raw_orcid":"https://orcid.org/0000-0001-5135-1394","affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Biomedical Sciences Division, 4700 King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":7,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57247901,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.19939999282360077,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.19939999282360077,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.1818999946117401,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12012","display_name":"Diatoms and Algae Research","score":0.08590000122785568,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extremophile","display_name":"Extremophile","score":0.6435999870300293},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5109999775886536},{"id":"https://openalex.org/keywords/transformative-learning","display_name":"Transformative learning","score":0.4438000023365021},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3400999903678894},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.3165999948978424},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.31209999322891235}],"concepts":[{"id":"https://openalex.org/C205458427","wikidata":"https://www.wikidata.org/wiki/Q206912","display_name":"Extremophile","level":4,"score":0.6435999870300293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5210999846458435},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5109999775886536},{"id":"https://openalex.org/C70587473","wikidata":"https://www.wikidata.org/wiki/Q7834111","display_name":"Transformative learning","level":2,"score":0.4438000023365021},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40220001339912415},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3691999912261963},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3400999903678894},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32409998774528503},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.3165999948978424},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.31209999322891235},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.3050999939441681},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C72362118","wikidata":"https://www.wikidata.org/wiki/Q1356572","display_name":"Exaptation","level":2,"score":0.27649998664855957},{"id":"https://openalex.org/C144501496","wikidata":"https://www.wikidata.org/wiki/Q5533489","display_name":"Genome editing","level":4,"score":0.27160000801086426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2703999876976013}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071825","descriptor_name":"Extremophiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000071825","descriptor_name":"Extremophiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000071825","descriptor_name":"Extremophiles","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000071825","descriptor_name":"Extremophiles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000071825","descriptor_name":"Extremophiles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046508","descriptor_name":"Culture Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag236","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42153318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42153318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13253578","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13253578/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag236","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2827220524","display_name":null,"funder_award_id":"28787-VIROMINE","funder_id":"https://openalex.org/F4320327859","funder_display_name":"Hellenic Foundation for Research and Innovation"},{"id":"https://openalex.org/G7664519700","display_name":null,"funder_award_id":"BAS/1/1096-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320327859","display_name":"Hellenic Foundation for Research and Innovation","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":201,"referenced_works":["https://openalex.org/W176296285","https://openalex.org/W1496933752","https://openalex.org/W1678709609","https://openalex.org/W1809341209","https://openalex.org/W1878521557","https://openalex.org/W1938241462","https://openalex.org/W1966407480","https://openalex.org/W1976325156","https://openalex.org/W1982417346","https://openalex.org/W2012900821","https://openalex.org/W2027184506","https://openalex.org/W2029886517","https://openalex.org/W2050515555","https://openalex.org/W2063642998","https://openalex.org/W2077953924","https://openalex.org/W2083655905","https://openalex.org/W2089858083","https://openalex.org/W2091427225","https://openalex.org/W2098290178","https://openalex.org/W2102453797","https://openalex.org/W2102818658","https://openalex.org/W2104901832","https://openalex.org/W2114104545","https://openalex.org/W2114956488","https://openalex.org/W2124790317","https://openalex.org/W2142428670","https://openalex.org/W2149155835","https://openalex.org/W2149452073","https://openalex.org/W2149943169","https://openalex.org/W2155876130","https://openalex.org/W2163316049","https://openalex.org/W2163993929","https://openalex.org/W2165147327","https://openalex.org/W2165446840","https://openalex.org/W2171723559","https://openalex.org/W2179438025","https://openalex.org/W2184284372","https://openalex.org/W2272616294","https://openalex.org/W2318186882","https://openalex.org/W2324411776","https://openalex.org/W2559088283","https://openalex.org/W2598883567","https://openalex.org/W2612037504","https://openalex.org/W2612954867","https://openalex.org/W2766239397","https://openalex.org/W2782623083","https://openalex.org/W2783214044","https://openalex.org/W2791404014","https://openalex.org/W2791848964","https://openalex.org/W2794004073","https://openalex.org/W2794083477","https://openalex.org/W2798038139","https://openalex.org/W2803260350","https://openalex.org/W2810333190","https://openalex.org/W2859249641","https://openalex.org/W2892232817","https://openalex.org/W2905991063","https://openalex.org/W2921431225","https://openalex.org/W2936282025","https://openalex.org/W2949521138","https://openalex.org/W2950310673","https://openalex.org/W2951274106","https://openalex.org/W2953321375","https://openalex.org/W2967688728","https://openalex.org/W2969443468","https://openalex.org/W2969830558","https://openalex.org/W2970881455","https://openalex.org/W2973098646","https://openalex.org/W2980197532","https://openalex.org/W2988411281","https://openalex.org/W2997601950","https://openalex.org/W3003110834","https://openalex.org/W3005478791","https://openalex.org/W3006265958","https://openalex.org/W3007081363","https://openalex.org/W3008594856","https://openalex.org/W3014575233","https://openalex.org/W3044184769","https://openalex.org/W3045908771","https://openalex.org/W3048775840","https://openalex.org/W3099496190","https://openalex.org/W3105895642","https://openalex.org/W3109312535","https://openalex.org/W3112236107","https://openalex.org/W3115382283","https://openalex.org/W3117992890","https://openalex.org/W3120084484","https://openalex.org/W3126300532","https://openalex.org/W3137047737","https://openalex.org/W3159203804","https://openalex.org/W3159504416","https://openalex.org/W3159653394","https://openalex.org/W3164046276","https://openalex.org/W3170112215","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3195010157","https://openalex.org/W3202547677","https://openalex.org/W3203343200","https://openalex.org/W3214417866","https://openalex.org/W3217216416","https://openalex.org/W4200553915","https://openalex.org/W4206976535","https://openalex.org/W4213330195","https://openalex.org/W4225393550","https://openalex.org/W4225687252","https://openalex.org/W4226148785","https://openalex.org/W4249263922","https://openalex.org/W4280624188","https://openalex.org/W4289521147","https://openalex.org/W4295138387","https://openalex.org/W4304481015","https://openalex.org/W4306871314","https://openalex.org/W4307846647","https://openalex.org/W4308616064","https://openalex.org/W4308616455","https://openalex.org/W4308999955","https://openalex.org/W4309157457","https://openalex.org/W4309305890","https://openalex.org/W4309305993","https://openalex.org/W4309326290","https://openalex.org/W4310957810","https://openalex.org/W4312044978","https://openalex.org/W4323031768","https://openalex.org/W4323036511","https://openalex.org/W4323364321","https://openalex.org/W4327550249","https://openalex.org/W4366607755","https://openalex.org/W4377138689","https://openalex.org/W4380363238","https://openalex.org/W4381851972","https://openalex.org/W4382490702","https://openalex.org/W4382603228","https://openalex.org/W4382631636","https://openalex.org/W4384920712","https://openalex.org/W4385302529","https://openalex.org/W4386690951","https://openalex.org/W4386766602","https://openalex.org/W4386923872","https://openalex.org/W4387296686","https://openalex.org/W4387441070","https://openalex.org/W4387541035","https://openalex.org/W4387866057","https://openalex.org/W4388007370","https://openalex.org/W4388033886","https://openalex.org/W4388454091","https://openalex.org/W4388615740","https://openalex.org/W4388652965","https://openalex.org/W4388665407","https://openalex.org/W4389982108","https://openalex.org/W4390640395","https://openalex.org/W4391972061","https://openalex.org/W4392018716","https://openalex.org/W4392162638","https://openalex.org/W4394855602","https://openalex.org/W4394875763","https://openalex.org/W4396219683","https://openalex.org/W4396622387","https://openalex.org/W4396704929","https://openalex.org/W4399774717","https://openalex.org/W4400097555","https://openalex.org/W4400227417","https://openalex.org/W4400367505","https://openalex.org/W4400932275","https://openalex.org/W4400937053","https://openalex.org/W4401339266","https://openalex.org/W4401455022","https://openalex.org/W4401526016","https://openalex.org/W4402272237","https://openalex.org/W4402620451","https://openalex.org/W4402632138","https://openalex.org/W4403405969","https://openalex.org/W4403605087","https://openalex.org/W4403852471","https://openalex.org/W4403924738","https://openalex.org/W4403935350","https://openalex.org/W4404046243","https://openalex.org/W4404343451","https://openalex.org/W4404458588","https://openalex.org/W4404521618","https://openalex.org/W4404644013","https://openalex.org/W4404821554","https://openalex.org/W4405220977","https://openalex.org/W4405907961","https://openalex.org/W4406139377","https://openalex.org/W4406789489","https://openalex.org/W4407168542","https://openalex.org/W4408054297","https://openalex.org/W4408764283","https://openalex.org/W4410050982","https://openalex.org/W4410134376","https://openalex.org/W4411107668","https://openalex.org/W4411868179","https://openalex.org/W4413079766","https://openalex.org/W4413889149","https://openalex.org/W4415069737","https://openalex.org/W4415147714","https://openalex.org/W4416308764","https://openalex.org/W4416815663","https://openalex.org/W7125967877","https://openalex.org/W7131377121"],"related_works":[],"abstract_inverted_index":{"Life":[0],"thrives":[1],"in":[2,57,82,148,152],"Earth's":[3],"most":[4],"inhospitable":[5],"environments,":[6],"from":[7,34,80],"boiling":[8],"hydrothermal":[9],"vents":[10],"to":[11,19,38,91,197],"hypersaline":[12],"lakes":[13],"and":[14,54,69,86,98,104,115,123,132,146,171,193,205],"frozen":[15],"polar":[16],"deserts,":[17],"thanks":[18],"the":[20,51,61,76,102,139,153,158,173,199,207],"remarkable":[21],"adaptations":[22],"of":[23,28,64,78,107,142,160,176,203,209],"extremophilic":[24],"microorganisms.":[25],"The":[26],"study":[27],"these":[29,184],"organisms":[30],"has":[31],"rapidly":[32],"evolved":[33],"early":[35],"cultivation-based":[36],"discoveries":[37],"a":[39],"data-rich":[40],"discipline":[41],"powered":[42],"by":[43,74],"advanced":[44],"omics":[45],"technologies.":[46],"This":[47],"review":[48,187],"comprehensively":[49],"outlines":[50],"current":[52],"landscape":[53],"future":[55],"directions":[56],"extremophile":[58,121],"research,":[59],"emphasizing":[60],"pivotal":[62],"role":[63],"bioinformatics,":[65],"machine":[66],"learning":[67],"(ML),":[68],"data-driven":[70],"approaches.":[71],"We":[72,109],"begin":[73],"charting":[75],"evolution":[77],"methodologies,":[79],"innovative":[81],"situ":[83],"cultivation":[84],"techniques":[85],"robust":[87],"biomolecule":[88],"extraction":[89],"protocols":[90],"modern":[92],"multi-omics":[93],"workflows":[94],"(metagenomics,":[95],"transcriptomics,":[96],"proteomics,":[97],"metabolomics)":[99],"that":[100],"decode":[101],"genetic":[103],"functional":[105],"basis":[106],"extremophiles.":[108],"then":[110],"catalogue":[111],"essential":[112],"bioinformatics":[113],"resources":[114],"specialized":[116],"databases":[117],"critical":[118],"for":[119],"annotating":[120],"genomes":[122],"uncovering":[124],"their":[125],"unique":[126],"adaptive":[127],"strategies,":[128],"including":[129],"protein":[130],"stabilization":[131],"syntrophic":[133],"metabolic":[134],"relationships.":[135],"Finally,":[136],"we":[137],"explore":[138],"transformative":[140],"potential":[141,202],"artificial":[143],"intelligence":[144],"(AI)":[145],"ML":[147],"overcoming":[149],"fundamental":[150],"challenges":[151],"field.":[154],"These":[155],"include":[156],"predicting":[157],"functions":[159],"uncharacterized":[161],"\"hypothetical\"":[162],"proteins,":[163],"identifying":[164],"novel":[165],"extremozymes,":[166],"modeling":[167],"complex":[168],"genotype-phenotype":[169],"relationships,":[170],"guiding":[172],"targeted":[174],"engineering":[175],"industrially":[177],"relevant":[178],"strains.":[179],"By":[180],"synthesizing":[181],"insights":[182],"across":[183],"domains,":[185],"this":[186],"highlights":[188],"how":[189],"integrating":[190],"computational":[191],"biology":[192],"AI":[194],"is":[195],"poised":[196],"unlock":[198],"full":[200],"biotechnological":[201],"extremophiles":[204],"redefine":[206],"boundaries":[208],"life":[210],"itself.":[211]},"counts_by_year":[],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2026-05-19T00:00:00"}
