{"id":"https://openalex.org/W7161144750","doi":"https://doi.org/10.1093/bib/bbag229","title":"Artificial Intelligence in genomics: a comprehensive survey of methods, resources, challenges, and prospects","display_name":"Artificial Intelligence in genomics: a comprehensive survey of methods, resources, challenges, and prospects","publication_year":2026,"publication_date":"2026-04-25","ids":{"openalex":"https://openalex.org/W7161144750","doi":"https://doi.org/10.1093/bib/bbag229","pmid":"https://pubmed.ncbi.nlm.nih.gov/42132948"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag229","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag229","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050375180","display_name":"Md Ishtyaq Mahmud","orcid":"https://orcid.org/0000-0001-6280-7035"},"institutions":[{"id":"https://openalex.org/I2802136459","display_name":"Martin Luther King, Jr. Multi-Service Ambulatory Care Center","ror":"https://ror.org/03apjks92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328359107","https://openalex.org/I2802136459"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Md Ishtyaq Mahmud","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston , 4226 Martin Luther King Boulevard, 77204-4005 TX,"],"raw_orcid":"https://orcid.org/0000-0001-6280-7035","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston , 4226 Martin Luther King Boulevard, 77204-4005 TX,","institution_ids":["https://openalex.org/I2802136459"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5136165932","display_name":"Tania Banerjee","orcid":null},"institutions":[{"id":"https://openalex.org/I2802136459","display_name":"Martin Luther King, Jr. Multi-Service Ambulatory Care Center","ror":"https://ror.org/03apjks92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328359107","https://openalex.org/I2802136459"]},{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tania Banerjee","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston , 4226 Martin Luther King Boulevard, 77204-4005 TX,","Department of Information Science Technology, University of Houston , 14000 University Boulevard, 77479-0800, TX,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston , 4226 Martin Luther King Boulevard, 77204-4005 TX,","institution_ids":["https://openalex.org/I2802136459"]},{"raw_affiliation_string":"Department of Information Science Technology, University of Houston , 14000 University Boulevard, 77479-0800, TX,","institution_ids":["https://openalex.org/I44461941"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5050375180"],"corresponding_institution_ids":["https://openalex.org/I2802136459"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":21.1446,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.99264092,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"27","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.22509999573230743,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.22509999573230743,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.11890000104904175,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0828000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5582000017166138},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.5253000259399414},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.46070000529289246},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.45159998536109924},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4325000047683716},{"id":"https://openalex.org/keywords/applications-of-artificial-intelligence","display_name":"Applications of artificial intelligence","score":0.38339999318122864},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.35280001163482666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6310999989509583},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5582000017166138},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5476999878883362},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.545799970626831},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.5253000259399414},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.46070000529289246},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.45159998536109924},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4325000047683716},{"id":"https://openalex.org/C157170001","wikidata":"https://www.wikidata.org/wiki/Q4781507","display_name":"Applications of artificial intelligence","level":2,"score":0.38339999318122864},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.35280001163482666},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.3418000042438507},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3174999952316284},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.28769999742507935},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.271699994802475},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2711000144481659},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.2623000144958496},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.2615000009536743},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.25040000677108765}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag229","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42132948","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42132948","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13174389","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13174389/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag229","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":141,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1486227004","https://openalex.org/W1505191356","https://openalex.org/W1644197353","https://openalex.org/W1966619297","https://openalex.org/W1968407066","https://openalex.org/W1979283544","https://openalex.org/W1981509058","https://openalex.org/W1984248485","https://openalex.org/W2018363492","https://openalex.org/W2022397091","https://openalex.org/W2025943989","https://openalex.org/W2061596350","https://openalex.org/W2064815984","https://openalex.org/W2067666373","https://openalex.org/W2076154138","https://openalex.org/W2078059415","https://openalex.org/W2079859830","https://openalex.org/W2096192437","https://openalex.org/W2096330673","https://openalex.org/W2109384743","https://openalex.org/W2118258530","https://openalex.org/W2119180969","https://openalex.org/W2121211805","https://openalex.org/W2123273050","https://openalex.org/W2136826997","https://openalex.org/W2143076232","https://openalex.org/W2157121418","https://openalex.org/W2158485828","https://openalex.org/W2170471837","https://openalex.org/W2179438025","https://openalex.org/W2198606573","https://openalex.org/W2259938310","https://openalex.org/W2282821441","https://openalex.org/W2295598076","https://openalex.org/W2345512687","https://openalex.org/W2395579298","https://openalex.org/W2461013690","https://openalex.org/W2479945688","https://openalex.org/W2513408092","https://openalex.org/W2612519453","https://openalex.org/W2612812586","https://openalex.org/W2617083299","https://openalex.org/W2618530766","https://openalex.org/W2653806839","https://openalex.org/W2761275051","https://openalex.org/W2770026599","https://openalex.org/W2780155440","https://openalex.org/W2783880833","https://openalex.org/W2786016794","https://openalex.org/W2794480084","https://openalex.org/W2796293949","https://openalex.org/W2800392236","https://openalex.org/W2803332630","https://openalex.org/W2803479625","https://openalex.org/W2810756255","https://openalex.org/W2810986024","https://openalex.org/W2889664156","https://openalex.org/W2901218091","https://openalex.org/W2901292166","https://openalex.org/W2901677030","https://openalex.org/W2905810301","https://openalex.org/W2911489562","https://openalex.org/W2913423296","https://openalex.org/W2919115771","https://openalex.org/W2919717584","https://openalex.org/W2927351257","https://openalex.org/W2935703330","https://openalex.org/W2945790622","https://openalex.org/W2949177718","https://openalex.org/W2949237386","https://openalex.org/W2952239877","https://openalex.org/W2952870794","https://openalex.org/W2963809228","https://openalex.org/W2964007531","https://openalex.org/W2964024268","https://openalex.org/W2968499116","https://openalex.org/W2987160512","https://openalex.org/W2990290777","https://openalex.org/W2995742898","https://openalex.org/W2996092187","https://openalex.org/W3003192283","https://openalex.org/W3010152544","https://openalex.org/W3012501605","https://openalex.org/W3024013192","https://openalex.org/W3028293372","https://openalex.org/W3045674654","https://openalex.org/W3085139254","https://openalex.org/W3092624702","https://openalex.org/W3103797259","https://openalex.org/W3112179900","https://openalex.org/W3127238141","https://openalex.org/W3129476455","https://openalex.org/W3133859624","https://openalex.org/W3134482219","https://openalex.org/W3172870918","https://openalex.org/W3174187171","https://openalex.org/W3177828909","https://openalex.org/W3184729641","https://openalex.org/W3186179742","https://openalex.org/W3201593137","https://openalex.org/W3203588026","https://openalex.org/W3211795435","https://openalex.org/W3212464243","https://openalex.org/W3213224786","https://openalex.org/W3217314753","https://openalex.org/W4200110750","https://openalex.org/W4210587306","https://openalex.org/W4210592951","https://openalex.org/W4225598893","https://openalex.org/W4289175114","https://openalex.org/W4297243391","https://openalex.org/W4297253404","https://openalex.org/W4307291223","https://openalex.org/W4307717106","https://openalex.org/W4308885870","https://openalex.org/W4315487473","https://openalex.org/W4376133202","https://openalex.org/W4381548118","https://openalex.org/W4383552219","https://openalex.org/W4384071683","https://openalex.org/W4385200455","https://openalex.org/W4386861232","https://openalex.org/W4392168151","https://openalex.org/W4392868645","https://openalex.org/W4392874417","https://openalex.org/W4392942061","https://openalex.org/W4396733184","https://openalex.org/W4396895148","https://openalex.org/W4402976645","https://openalex.org/W4404509621","https://openalex.org/W4404821554","https://openalex.org/W4406062782","https://openalex.org/W4406440058","https://openalex.org/W4408635878","https://openalex.org/W4410997516","https://openalex.org/W4412454127","https://openalex.org/W4415053647","https://openalex.org/W4415678708","https://openalex.org/W7113901142","https://openalex.org/W7133233472"],"related_works":[],"abstract_inverted_index":{"Artificial":[0],"intelligence":[1],"(AI)":[2],"is":[3],"reshaping":[4],"genomics":[5,124],"by":[6],"enabling":[7],"unprecedented":[8],"insights":[9],"into":[10],"disease":[11],"mechanisms,":[12],"therapeutic":[13],"design,":[14],"and":[15,42,45,70,79,99,113,125,134],"precision":[16],"medicine.":[17],"This":[18],"review":[19],"provides":[20],"a":[21],"comprehensive":[22],"survey":[23],"of":[24],"cutting-edge":[25],"AI":[26],"methodologies,":[27],"including":[28],"machine":[29],"learning,":[30],"deep":[31],"learning":[32],"(DL),":[33],"natural":[34],"language":[35,38],"processing,":[36],"large":[37],"models,":[39],"generative":[40],"frameworks,":[41],"explainable":[43],"AI,":[44],"their":[46],"applications":[47],"across":[48],"genomics.":[49],"We":[50],"systematically":[51],"summarize":[52],"how":[53],"these":[54],"technologies":[55],"advance":[56],"key":[57],"domains,":[58],"such":[59,108],"as":[60,109],"gene":[61,65],"sequencing,":[62],"variant":[63],"detection,":[64],"expression":[66],"analysis,":[67],"personalized":[68,135],"medicine,":[69],"CRISPR-based":[71],"genome":[72],"editing.":[73],"Core":[74],"computational":[75,100],"tools,":[76],"benchmark":[77],"datasets,":[78],"open-source":[80],"frameworks":[81],"supporting":[82],"AI-driven":[83],"genomic":[84],"research":[85],"are":[86],"detailed.":[87],"Despite":[88],"remarkable":[89],"progress,":[90],"challenges":[91],"persist":[92],"in":[93],"data":[94,104],"quality,":[95],"interpretability,":[96],"ethical":[97],"governance,":[98],"scalability.":[101],"Integrating":[102],"multi-omics":[103],"through":[105],"advanced":[106],"architectures,":[107],"graph":[110],"neural":[111],"networks":[112],"multimodal":[114],"DL":[115],"promises":[116],"deeper":[117],"biological":[118],"understanding.":[119],"Emerging":[120],"paradigms,":[121],"e.g.":[122],"synthetic":[123],"digital":[126],"twins,":[127],"highlight":[128],"AI's":[129],"potential":[130],"to":[131],"deliver":[132],"predictive":[133],"healthcare.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-05-15T00:00:00"}
