{"id":"https://openalex.org/W7134180600","doi":"https://doi.org/10.1093/bib/bbag105","title":"MutPPI+: a multimodal framework for predicting mutation effects on protein\u2013protein interactions via mutation-path-based data augmentation","display_name":"MutPPI+: a multimodal framework for predicting mutation effects on protein\u2013protein interactions via mutation-path-based data augmentation","publication_year":2026,"publication_date":"2026-02-22","ids":{"openalex":"https://openalex.org/W7134180600","doi":"https://doi.org/10.1093/bib/bbag105","pmid":"https://pubmed.ncbi.nlm.nih.gov/41795656"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag105","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag105","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5128347790","display_name":"Juntao Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juntao Deng","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":"https://orcid.org/0000-0002-1780-8984","affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007775504","display_name":"M. F. Gu","orcid":"https://orcid.org/0000-0001-9136-8449"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Miao Gu","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101480347","display_name":"Pengyan Zhang","orcid":"https://orcid.org/0000-0003-4367-1069"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengyan Zhang","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128350607","display_name":"Tao Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Liu","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128354127","display_name":"Guansong Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guansong Hu","raw_affiliation_strings":["Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","institution_ids":["https://openalex.org/I159948400"]},{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,","institution_ids":["https://openalex.org/I4210153930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124930251","display_name":"Mingyu Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingyu Dong","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100681561","display_name":"Yabin Zhang","orcid":"https://orcid.org/0000-0003-2532-9868"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yabin Zhang","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128359292","display_name":"Yizhen Song","orcid":null},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yizhen Song","raw_affiliation_strings":["College of Information Science & Technology, Beijing University of Chemical Technology , Beisanhuan East Road 15, Chaoyang District, Beijing, 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science & Technology, Beijing University of Chemical Technology , Beisanhuan East Road 15, Chaoyang District, Beijing, 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yunfan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunfan Zhang","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128358509","display_name":"Min Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Liu","raw_affiliation_strings":["Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,"],"raw_orcid":"https://orcid.org/0000-0002-7273-0518","affiliations":[{"raw_affiliation_string":"Department of Automation, Tsinghua University , Shuangqing Road 30, Haidian District, Beijing, 100084 ,","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,","institution_ids":["https://openalex.org/I4210153930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103610446","display_name":"Tian Junzhang","orcid":null},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junzhang Tian","raw_affiliation_strings":["Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","institution_ids":["https://openalex.org/I159948400"]},{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,","institution_ids":["https://openalex.org/I4210153930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5128334386","display_name":"Weibin Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weibin Cheng","raw_affiliation_strings":["Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,"],"raw_orcid":"https://orcid.org/0000-0002-9845-6676","affiliations":[{"raw_affiliation_string":"Department of Nuclear Medicine, Jinan University , Huangpu Avenue West 601, Tianhe District, Guangzhou, 510632 ,","institution_ids":["https://openalex.org/I159948400"]},{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application, Guangdong Second Provincial General Hospital , Xingang Middle Road 466, Haizhu District, Guangzhou, 510317 ,","institution_ids":["https://openalex.org/I4210153930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5128347790"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.50741983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4025000035762787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4025000035762787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.15309999883174896,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.13429999351501465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.7110000252723694},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.6510999798774719},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5174999833106995},{"id":"https://openalex.org/keywords/extractor","display_name":"Extractor","score":0.4431999921798706},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4327000081539154},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.39010000228881836},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.37070000171661377}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7483999729156494},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.7110000252723694},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.6510999798774719},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5453000068664551},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5174999833106995},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5141000151634216},{"id":"https://openalex.org/C117978034","wikidata":"https://www.wikidata.org/wiki/Q5422192","display_name":"Extractor","level":2,"score":0.4431999921798706},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4327000081539154},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4113999903202057},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.39010000228881836},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.37070000171661377},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34220001101493835},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.3382999897003174},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.2863999903202057},{"id":"https://openalex.org/C2779926675","wikidata":"https://www.wikidata.org/wiki/Q6943700","display_name":"Mutant protein","level":4,"score":0.26429998874664307},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.2556000053882599},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.25519999861717224},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.2533999979496002}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbag105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag105","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41795656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41795656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12967331","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12967331/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag105","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2150381545","display_name":null,"funder_award_id":"62173204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3226641281","display_name":null,"funder_award_id":"buctrc202337","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W2023490488","https://openalex.org/W2125955464","https://openalex.org/W2163052596","https://openalex.org/W2283896596","https://openalex.org/W2780523853","https://openalex.org/W2909255640","https://openalex.org/W2953103783","https://openalex.org/W2995387264","https://openalex.org/W3005822506","https://openalex.org/W3007500173","https://openalex.org/W3026328277","https://openalex.org/W3082498841","https://openalex.org/W3154495123","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3198751005","https://openalex.org/W3204640131","https://openalex.org/W3204725759","https://openalex.org/W4304196012","https://openalex.org/W4310645193","https://openalex.org/W4311687270","https://openalex.org/W4313477285","https://openalex.org/W4321791966","https://openalex.org/W4323348775","https://openalex.org/W4327550249","https://openalex.org/W4382632548","https://openalex.org/W4383957026","https://openalex.org/W4386191915","https://openalex.org/W4386316491","https://openalex.org/W4388092799","https://openalex.org/W4390711219","https://openalex.org/W4393928505","https://openalex.org/W4398782969","https://openalex.org/W4400140777","https://openalex.org/W4400344219","https://openalex.org/W4401418198","https://openalex.org/W4402322935","https://openalex.org/W4403783647","https://openalex.org/W4404442208","https://openalex.org/W4404577932","https://openalex.org/W4405035146","https://openalex.org/W4405079398","https://openalex.org/W4408693799","https://openalex.org/W4412102685","https://openalex.org/W4412491316","https://openalex.org/W4415648205","https://openalex.org/W7127327127"],"related_works":[],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1],"(PPIs)":[2],"are":[3],"central":[4],"to":[5],"cellular":[6],"signaling":[7],"and":[8,10,33,54,63,106,112,123,144],"regulation,":[9],"their":[11],"dysregulation":[12],"underlies":[13],"many":[14],"diseases.":[15],"Predicting":[16],"the":[17,138,141,145],"impact":[18],"of":[19,51,109,140],"mutations":[20],"on":[21,71,121],"PPI":[22],"stability,":[23],"quantified":[24],"as":[25],"\u0394\u0394G,":[26],"is":[27],"essential":[28],"for":[29,61,159],"understanding":[30],"disease":[31],"mechanisms":[32],"guiding":[34],"protein":[35,83,165],"engineering.":[36],"Here,":[37],"we":[38,86,95],"first":[39],"present":[40],"MutPPI,":[41],"a":[42,56,97,155],"graph-based":[43],"deep-learning":[44],"model":[45],"that":[46],"encodes":[47],"full-residue":[48],"structural":[49],"features":[50],"protein-protein":[52],"complexes":[53],"employs":[55],"shared":[57],"GIN-GAT":[58],"feature":[59],"extractor":[60],"wild-type":[62],"mutant":[64],"complexes.":[65],"MutPPI":[66,111],"outperforms":[67],"12":[68],"existing":[69],"methods":[70],"an":[72],"antibody-antigen":[73],"single-point":[74],"mutation":[75,127],"dataset":[76],"(S645).":[77],"By":[78],"integrating":[79],"evolutionary":[80],"information":[81],"from":[82],"language":[84],"models,":[85],"further":[87],"develop":[88],"MutPPI-plus,":[89],"achieving":[90],"enhanced":[91],"predictive":[92],"performance.":[93],"Second,":[94],"proposed":[96],"mutation-path-based":[98],"data":[99,115,148],"augmentation":[100,149],"strategy,":[101],"which":[102],"enriches":[103],"input":[104],"modalities":[105],"improves":[107],"generalization":[108],"both":[110],"MutPPI-plus.":[113],"After":[114],"augmentation,":[116],"MutPPI-plus":[117],"demonstrates":[118],"state-of-the-art":[119],"performance":[120],"S645":[122],"three":[124],"additional":[125],"multi-point":[126],"datasets":[128],"(SM_ZEMu,":[129],"SM595,":[130],"SM1124),":[131],"substantially":[132],"surpassing":[133],"DDMut-PPI.":[134],"Our":[135],"analyses":[136],"highlight":[137],"benefits":[139],"multimodal":[142],"framework":[143],"physically":[146],"informed":[147],"method.":[150],"Together,":[151],"these":[152],"results":[153],"provide":[154],"versatile":[156],"computational":[157],"tool":[158],"accurate":[160],"\u0394\u0394G":[161],"prediction,":[162],"advancing":[163],"rational":[164],"design.":[166]},"counts_by_year":[],"updated_date":"2026-03-09T07:06:17.341095","created_date":"2026-03-09T00:00:00"}
