{"id":"https://openalex.org/W7134012631","doi":"https://doi.org/10.1093/bib/bbag017","title":"MDPD reveals specific microbial signatures in human pulmonary diseases","display_name":"MDPD reveals specific microbial signatures in human pulmonary diseases","publication_year":2026,"publication_date":"2026-02-28","ids":{"openalex":"https://openalex.org/W7134012631","doi":"https://doi.org/10.1093/bib/bbag017","pmid":"https://pubmed.ncbi.nlm.nih.gov/41785052"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbag017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag017","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbag017","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111214890","display_name":"Paramita Roy","orcid":null},"institutions":[{"id":"https://openalex.org/I152754861","display_name":"Bose Institute","ror":"https://ror.org/01a5mqy88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I152754861"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Paramita Roy","raw_affiliation_strings":["Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,","institution_ids":["https://openalex.org/I152754861"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Dibakar Roy","orcid":null},"institutions":[{"id":"https://openalex.org/I152754861","display_name":"Bose Institute","ror":"https://ror.org/01a5mqy88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I152754861"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dibakar Roy","raw_affiliation_strings":["Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,","institution_ids":["https://openalex.org/I152754861"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071010507","display_name":"Sudipto Bhattacharjee","orcid":"https://orcid.org/0000-0002-3578-7013"},"institutions":[{"id":"https://openalex.org/I106542073","display_name":"University of Calcutta","ror":"https://ror.org/01e7v7w47","country_code":"IN","type":"education","lineage":["https://openalex.org/I106542073"]},{"id":"https://openalex.org/I71495548","display_name":"Indian Institute of Management Calcutta","ror":"https://ror.org/02zhewk16","country_code":"IN","type":"education","lineage":["https://openalex.org/I71495548"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sudipto Bhattacharjee","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Calcutta , JD-2, Sector-III, Salt Lake, Kolkata-700106 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Calcutta , JD-2, Sector-III, Salt Lake, Kolkata-700106 ,","institution_ids":["https://openalex.org/I106542073","https://openalex.org/I71495548"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029654401","display_name":"Abhirupa Ghosh","orcid":"https://orcid.org/0000-0002-3980-4749"},"institutions":[{"id":"https://openalex.org/I152754861","display_name":"Bose Institute","ror":"https://ror.org/01a5mqy88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I152754861"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Abhirupa Ghosh","raw_affiliation_strings":["Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,","Department of Biomedical Informatics, University of Colorado , Anschutz Medical Campus, Aurora, CO 80045 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,","institution_ids":["https://openalex.org/I152754861"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado , Anschutz Medical Campus, Aurora, CO 80045 ,","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036701994","display_name":"Sudipto Saha","orcid":"https://orcid.org/0000-0001-9433-8894"},"institutions":[{"id":"https://openalex.org/I152754861","display_name":"Bose Institute","ror":"https://ror.org/01a5mqy88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I152754861"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sudipto Saha","raw_affiliation_strings":["Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,"],"raw_orcid":"https://orcid.org/0000-0001-9433-8894","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Bose Institute , EN-80, Sector-V, Bidhan Nagar, Kolkata 700091, West Bengal ,","institution_ids":["https://openalex.org/I152754861"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111214890"],"corresponding_institution_ids":["https://openalex.org/I152754861"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.52969055,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.25519999861717224,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.25519999861717224,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10870","display_name":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","score":0.10029999911785126,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.05380000174045563,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6570000052452087},{"id":"https://openalex.org/keywords/pulmonary-disease","display_name":"Pulmonary disease","score":0.6173999905586243},{"id":"https://openalex.org/keywords/human-disease","display_name":"Human disease","score":0.5741000175476074},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.4424999952316284},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.44209998846054077}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7549999952316284},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6570000052452087},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6565999984741211},{"id":"https://openalex.org/C2992779976","wikidata":"https://www.wikidata.org/wiki/Q3286546","display_name":"Pulmonary disease","level":2,"score":0.6173999905586243},{"id":"https://openalex.org/C2988867146","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Human disease","level":3,"score":0.5741000175476074},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.4424999952316284},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.44209998846054077},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.3249000012874603},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.31119999289512634},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3084999918937683},{"id":"https://openalex.org/C2987857752","wikidata":"https://www.wikidata.org/wiki/Q12147","display_name":"Human health","level":2,"score":0.3059999942779541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27219998836517334}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008171","descriptor_name":"Lung Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbag017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag017","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41785052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41785052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/b8ba08c2-c662-4673-ac20-f427b1815079","is_oa":true,"landing_page_url":"https://vbn.aau.dk/da/publications/b8ba08c2-c662-4673-ac20-f427b1815079","pdf_url":null,"source":{"id":"https://openalex.org/S4306401731","display_name":"VBN Forskningsportal (Aalborg Universitet)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I891191580","host_organization_name":"Aalborg University","host_organization_lineage":["https://openalex.org/I891191580"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Roy, P, Roy, D, Bhattacharjee, S, Ghosh, A & Saha, S 2026, 'MDPD reveals specific microbial signatures in human pulmonary diseases', Briefings in Bioinformatics, vol. 27, no. 2, bbag017, pp. bbag017. https://doi.org/10.1093/bib/bbag017","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:12962063","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12962063/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12962063/pdf/bbag017.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbag017","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbag017","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000264108181,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320329061","display_name":"Bose Institute","ror":"https://ror.org/01a5mqy88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":82,"referenced_works":["https://openalex.org/W1817040532","https://openalex.org/W1964940342","https://openalex.org/W1971061059","https://openalex.org/W1988195734","https://openalex.org/W2050591900","https://openalex.org/W2098621843","https://openalex.org/W2105505221","https://openalex.org/W2116041602","https://openalex.org/W2118034789","https://openalex.org/W2133856765","https://openalex.org/W2156975150","https://openalex.org/W2401404581","https://openalex.org/W2605831190","https://openalex.org/W2735182893","https://openalex.org/W2763547223","https://openalex.org/W2766656426","https://openalex.org/W2903266247","https://openalex.org/W2947765278","https://openalex.org/W2948355575","https://openalex.org/W2966520335","https://openalex.org/W2972348732","https://openalex.org/W2990618091","https://openalex.org/W3013167330","https://openalex.org/W3016270080","https://openalex.org/W3022975938","https://openalex.org/W3024859896","https://openalex.org/W3030441098","https://openalex.org/W3030942202","https://openalex.org/W3085250730","https://openalex.org/W3088893096","https://openalex.org/W3113357999","https://openalex.org/W3131292591","https://openalex.org/W3141470266","https://openalex.org/W3143565028","https://openalex.org/W3159504416","https://openalex.org/W3211263674","https://openalex.org/W3211779138","https://openalex.org/W3213893926","https://openalex.org/W4206984727","https://openalex.org/W4210770896","https://openalex.org/W4223590061","https://openalex.org/W4282968815","https://openalex.org/W4288698636","https://openalex.org/W4295804316","https://openalex.org/W4300863449","https://openalex.org/W4306833772","https://openalex.org/W4307309192","https://openalex.org/W4309387956","https://openalex.org/W4310363050","https://openalex.org/W4310923015","https://openalex.org/W4313321074","https://openalex.org/W4313409474","https://openalex.org/W4315471626","https://openalex.org/W4323653892","https://openalex.org/W4378901751","https://openalex.org/W4383552496","https://openalex.org/W4385143910","https://openalex.org/W4388421956","https://openalex.org/W4388637778","https://openalex.org/W4390403217","https://openalex.org/W4390494320","https://openalex.org/W4390929150","https://openalex.org/W4391845508","https://openalex.org/W4391906117","https://openalex.org/W4392657044","https://openalex.org/W4393930818","https://openalex.org/W4394988539","https://openalex.org/W4399129818","https://openalex.org/W4399546428","https://openalex.org/W4399715699","https://openalex.org/W4400187961","https://openalex.org/W4400216217","https://openalex.org/W4400441634","https://openalex.org/W4400889670","https://openalex.org/W4404303069","https://openalex.org/W4404337253","https://openalex.org/W4404678114","https://openalex.org/W4404909067","https://openalex.org/W4408723945","https://openalex.org/W4409816478","https://openalex.org/W4411782461","https://openalex.org/W4413003946"],"related_works":[],"abstract_inverted_index":{"Pulmonary":[0,29],"diseases":[1,39,70,149],"are":[2,108,133],"becoming":[3],"a":[4],"serious":[5],"threat":[6],"worldwide,":[7],"and":[8,71,85,95,145,150],"enormous":[9],"data":[10,61],"from":[11,45,57,62],"different":[12],"human":[13],"microbiomes":[14],"have":[15,52],"been":[16],"generated":[17],"to":[18,47,67,81,91,147],"understand":[19],"these":[20],"complex":[21],"diseases.":[22],"Here,":[23],"we":[24],"introduce":[25],"Microbiome":[26],"Database":[27],"of":[28,37,116],"Diseases":[30],"(MDPD),":[31],"an":[32],"open-access,":[33],"comprehensive":[34],"systemic":[35],"catalog":[36],"pulmonary":[38,69],"by":[40],"manually":[41],"curating":[42],"global":[43],"studies":[44],"2012":[46],"2024":[48],"(13":[49],"years).":[50],"We":[51],"compiled":[53],"59":[54],"362":[55],"runs":[56],"430":[58],"BioProjects,":[59],"encompassing":[60],"10":[63],"body":[64,151],"sites":[65],"related":[66],"19":[68],"healthy":[72],"groups":[73],"covering":[74],"278":[75],"distinct":[76],"sub-groups.":[77],"MDPD":[78,132,153],"enables":[79],"users":[80,117],"analyze":[82],"each":[83,111],"BioProject":[84,112],"customize":[86],"analysis":[87],"with":[88,135],"multiple":[89],"BioProjects":[90],"identify":[92],"taxonomic":[93],"profiles":[94],"disease":[96],"group/sub-group":[97],"specific":[98],"microbial":[99],"signatures.":[100],"The":[101],"re-analyzed":[102],"intermediate":[103],"Biological":[104],"Observation":[105],"Matrix":[106],"files":[107],"provided":[109],"for":[110,113,118],"the":[114],"accessibility":[115],"further":[119,139],"applications,":[120],"such":[121],"as":[122],"machine":[123],"learning-based":[124],"classification.":[125],"Identified":[126],"microbes":[127],"(bacteria,":[128],"fungi,":[129],"viruses)":[130],"in":[131],"annotated":[134],"several":[136],"attributes,":[137],"providing":[138],"insights":[140],"into":[141],"their":[142],"disease-causing":[143],"potential":[144],"specificity":[146],"certain":[148],"sites.":[152],"is":[154],"freely":[155],"available":[156],"at:":[157],"https://bicresources.jcbose.ac.in/ssaha4/mdpd/.":[158]},"counts_by_year":[],"updated_date":"2026-03-06T06:51:02.790390","created_date":"2026-03-06T00:00:00"}
